2024-07-11 01:55:28,824 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 01:55:29,149 Running on GPU
2024-07-11 01:55:32,783 Found 6 citations for tools or databases
2024-07-11 01:55:32,783 Query 1/1: KPRA_CCGL (length 546)
2024-07-11 01:55:33,238 Sleeping for 9s. Reason: PENDING
2024-07-11 01:55:42,660 Sleeping for 9s. Reason: RUNNING
2024-07-11 01:55:52,056 Sleeping for 9s. Reason: RUNNING
2024-07-11 01:56:01,460 Sleeping for 7s. Reason: RUNNING
2024-07-11 01:56:08,885 Sleeping for 8s. Reason: RUNNING
2024-07-11 01:56:17,312 Sleeping for 6s. Reason: RUNNING
2024-07-11 01:56:23,716 Sleeping for 5s. Reason: RUNNING
2024-07-11 01:56:29,118 Sleeping for 5s. Reason: RUNNING
2024-07-11 01:56:34,530 Sleeping for 9s. Reason: RUNNING
2024-07-11 01:56:45,688 Sleeping for 10s. Reason: PENDING
2024-07-11 01:56:56,119 Sleeping for 5s. Reason: RUNNING
2024-07-11 01:57:01,517 Sleeping for 5s. Reason: RUNNING
2024-07-11 01:57:06,917 Sleeping for 9s. Reason: RUNNING
2024-07-11 01:57:16,326 Sleeping for 9s. Reason: RUNNING
2024-07-11 01:57:27,536 Setting max_seq=508, max_extra_seq=1862
2024-07-11 02:00:07,031 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.8 pTM=0.579 ipTM=0.145
2024-07-11 02:00:14,636 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.4 pTM=0.589 ipTM=0.156 tol=2.97
2024-07-11 02:00:22,242 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.8 pTM=0.583 ipTM=0.136 tol=2.08
2024-07-11 02:00:29,849 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.1 pTM=0.577 ipTM=0.125 tol=1.52
2024-07-11 02:00:37,463 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80 pTM=0.574 ipTM=0.119 tol=1.13
2024-07-11 02:00:45,084 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.3 pTM=0.576 ipTM=0.117 tol=0.852
2024-07-11 02:00:52,707 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.5 pTM=0.575 ipTM=0.115 tol=0.439
2024-07-11 02:00:52,707 alphafold2_multimer_v3_model_1_seed_000 took 199.8s (6 recycles)
2024-07-11 02:01:00,543 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.3 pTM=0.568 ipTM=0.104
2024-07-11 02:01:08,185 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.8 pTM=0.57 ipTM=0.0922 tol=3.95
2024-07-11 02:01:15,833 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.2 pTM=0.573 ipTM=0.0931 tol=3.29
2024-07-11 02:01:23,474 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.1 pTM=0.57 ipTM=0.0911 tol=1.56
2024-07-11 02:01:31,120 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.4 pTM=0.57 ipTM=0.0902 tol=1.3
2024-07-11 02:01:38,768 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.6 pTM=0.571 ipTM=0.0894 tol=0.75
2024-07-11 02:01:46,420 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.6 pTM=0.572 ipTM=0.0898 tol=0.69
2024-07-11 02:01:54,063 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.4 pTM=0.572 ipTM=0.0916 tol=1.13
2024-07-11 02:02:01,713 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.8 pTM=0.574 ipTM=0.0912 tol=1.16
2024-07-11 02:02:09,358 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=81.8 pTM=0.574 ipTM=0.0931 tol=0.711
2024-07-11 02:02:17,007 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=81.8 pTM=0.575 ipTM=0.0945 tol=0.696
2024-07-11 02:02:24,649 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=81.6 pTM=0.574 ipTM=0.0948 tol=1.08
2024-07-11 02:02:32,293 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=81.8 pTM=0.575 ipTM=0.0933 tol=0.682
2024-07-11 02:02:39,932 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=81.6 pTM=0.574 ipTM=0.0935 tol=0.96
2024-07-11 02:02:47,577 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=81.7 pTM=0.575 ipTM=0.0922 tol=0.624
2024-07-11 02:02:55,220 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=81.6 pTM=0.574 ipTM=0.092 tol=0.512
2024-07-11 02:03:02,861 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=81.8 pTM=0.575 ipTM=0.0914 tol=0.624
2024-07-11 02:03:10,510 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=82.1 pTM=0.577 ipTM=0.0902 tol=0.633
2024-07-11 02:03:18,159 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=82.1 pTM=0.577 ipTM=0.0911 tol=0.783
2024-07-11 02:03:25,807 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=82.3 pTM=0.579 ipTM=0.0909 tol=0.407
2024-07-11 02:03:25,808 alphafold2_multimer_v3_model_2_seed_000 took 152.9s (19 recycles)
2024-07-11 02:03:33,640 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.3 pTM=0.584 ipTM=0.146
2024-07-11 02:03:41,276 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.5 pTM=0.58 ipTM=0.127 tol=3.46
2024-07-11 02:03:48,908 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.8 pTM=0.579 ipTM=0.116 tol=1.91
2024-07-11 02:03:56,544 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.7 pTM=0.571 ipTM=0.101 tol=1.43
2024-07-11 02:04:04,191 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.4 pTM=0.571 ipTM=0.0954 tol=1.46
2024-07-11 02:04:11,831 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.7 pTM=0.573 ipTM=0.1 tol=1.06
2024-07-11 02:04:19,466 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.7 pTM=0.574 ipTM=0.101 tol=0.282
2024-07-11 02:04:19,466 alphafold2_multimer_v3_model_3_seed_000 took 53.5s (6 recycles)
2024-07-11 02:04:27,290 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.5 pTM=0.573 ipTM=0.122
2024-07-11 02:04:34,925 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.7 pTM=0.59 ipTM=0.155 tol=3.38
2024-07-11 02:04:42,563 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.2 pTM=0.587 ipTM=0.145 tol=1.34
2024-07-11 02:04:50,190 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=80.1 pTM=0.583 ipTM=0.141 tol=2.1
2024-07-11 02:04:57,816 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80 pTM=0.581 ipTM=0.139 tol=1.18
2024-07-11 02:05:05,450 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.5 pTM=0.583 ipTM=0.136 tol=0.533
2024-07-11 02:05:13,084 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.4 pTM=0.581 ipTM=0.132 tol=0.502
2024-07-11 02:05:20,715 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.3 pTM=0.581 ipTM=0.134 tol=0.216
2024-07-11 02:05:20,715 alphafold2_multimer_v3_model_4_seed_000 took 61.1s (7 recycles)
2024-07-11 02:05:28,557 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.4 pTM=0.569 ipTM=0.0978
2024-07-11 02:05:36,182 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.2 pTM=0.564 ipTM=0.106 tol=2.98
2024-07-11 02:05:43,812 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.4 pTM=0.566 ipTM=0.105 tol=2.1
2024-07-11 02:05:51,444 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.4 pTM=0.563 ipTM=0.0988 tol=1.98
2024-07-11 02:05:59,081 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.8 pTM=0.566 ipTM=0.0988 tol=1.53
2024-07-11 02:06:06,720 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.6 pTM=0.564 ipTM=0.0969 tol=1.05
2024-07-11 02:06:14,358 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.6 pTM=0.565 ipTM=0.0987 tol=0.556
2024-07-11 02:06:21,990 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=77.2 pTM=0.565 ipTM=0.105 tol=0.833
2024-07-11 02:06:29,626 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.4 pTM=0.567 ipTM=0.101 tol=0.929
2024-07-11 02:06:37,260 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.4 pTM=0.566 ipTM=0.102 tol=0.396
2024-07-11 02:06:37,260 alphafold2_multimer_v3_model_5_seed_000 took 76.3s (9 recycles)
2024-07-11 02:06:37,461 reranking models by 'multimer' metric
2024-07-11 02:06:40,381 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 02:06:56,985 Relaxation took 19.5s
2024-07-11 02:06:56,986 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.3 pTM=0.581 ipTM=0.134
2024-07-11 02:07:09,480 Relaxation took 12.5s
2024-07-11 02:07:09,480 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.5 pTM=0.575 ipTM=0.115
2024-07-11 02:07:41,137 Relaxation took 31.7s
2024-07-11 02:07:41,138 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.7 pTM=0.574 ipTM=0.101
2024-07-11 02:07:53,934 Relaxation took 12.8s
2024-07-11 02:07:53,935 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.4 pTM=0.566 ipTM=0.102
2024-07-11 02:08:07,613 Relaxation took 13.7s
2024-07-11 02:08:07,614 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=82.3 pTM=0.579 ipTM=0.0909
2024-07-11 02:08:08,673 Done