2024-07-11 04:05:00,188 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 04:05:00,523 Running on GPU
2024-07-11 04:05:04,063 Found 6 citations for tools or databases
2024-07-11 04:05:04,064 Query 1/1: LMCD1_LECT2 (length 516)
2024-07-11 04:05:04,523 Sleeping for 5s. Reason: PENDING
2024-07-11 04:05:09,934 Sleeping for 5s. Reason: RUNNING
2024-07-11 04:05:15,351 Sleeping for 5s. Reason: RUNNING
2024-07-11 04:05:20,763 Sleeping for 10s. Reason: RUNNING
2024-07-11 04:05:31,176 Sleeping for 9s. Reason: RUNNING
2024-07-11 04:05:40,584 Sleeping for 7s. Reason: RUNNING
2024-07-11 04:05:47,997 Sleeping for 6s. Reason: RUNNING
2024-07-11 04:05:54,410 Sleeping for 6s. Reason: RUNNING
2024-07-11 04:06:00,816 Sleeping for 7s. Reason: RUNNING
2024-07-11 04:06:08,230 Sleeping for 9s. Reason: RUNNING
2024-07-11 04:06:17,633 Sleeping for 6s. Reason: RUNNING
2024-07-11 04:06:24,035 Sleeping for 7s. Reason: RUNNING
2024-07-11 04:06:31,448 Sleeping for 10s. Reason: RUNNING
2024-07-11 04:06:44,153 Sleeping for 10s. Reason: PENDING
2024-07-11 04:06:54,560 Sleeping for 9s. Reason: RUNNING
2024-07-11 04:07:03,958 Sleeping for 5s. Reason: RUNNING
2024-07-11 04:07:09,360 Sleeping for 6s. Reason: RUNNING
2024-07-11 04:07:15,760 Sleeping for 9s. Reason: RUNNING
2024-07-11 04:07:25,173 Sleeping for 6s. Reason: RUNNING
2024-07-11 04:07:33,396 Setting max_seq=508, max_extra_seq=2048
2024-07-11 04:09:50,226 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.5 pTM=0.603 ipTM=0.106
2024-07-11 04:09:56,092 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.4 pTM=0.61 ipTM=0.102 tol=5.95
2024-07-11 04:10:01,962 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.9 pTM=0.61 ipTM=0.107 tol=4.34
2024-07-11 04:10:07,827 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=78.6 pTM=0.619 ipTM=0.142 tol=3.15
2024-07-11 04:10:13,685 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.9 pTM=0.623 ipTM=0.156 tol=1.43
2024-07-11 04:10:19,536 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.6 pTM=0.617 ipTM=0.142 tol=0.84
2024-07-11 04:10:25,396 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79 pTM=0.625 ipTM=0.159 tol=0.748
2024-07-11 04:10:31,256 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.3 pTM=0.622 ipTM=0.145 tol=0.383
2024-07-11 04:10:31,257 alphafold2_multimer_v3_model_1_seed_000 took 170.3s (7 recycles)
2024-07-11 04:10:37,314 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.1 pTM=0.625 ipTM=0.19
2024-07-11 04:10:43,190 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.5 pTM=0.628 ipTM=0.167 tol=1.8
2024-07-11 04:10:49,055 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.4 pTM=0.623 ipTM=0.163 tol=1.36
2024-07-11 04:10:54,928 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.4 pTM=0.621 ipTM=0.157 tol=0.644
2024-07-11 04:11:00,789 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.8 pTM=0.625 ipTM=0.172 tol=0.718
2024-07-11 04:11:06,649 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.6 pTM=0.622 ipTM=0.164 tol=0.371
2024-07-11 04:11:06,650 alphafold2_multimer_v3_model_2_seed_000 took 35.2s (5 recycles)
2024-07-11 04:11:12,706 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.8 pTM=0.62 ipTM=0.18
2024-07-11 04:11:18,598 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.4 pTM=0.637 ipTM=0.202 tol=5.17
2024-07-11 04:11:24,479 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.9 pTM=0.63 ipTM=0.173 tol=1.74
2024-07-11 04:11:30,360 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.3 pTM=0.636 ipTM=0.188 tol=0.556
2024-07-11 04:11:36,254 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.1 pTM=0.63 ipTM=0.172 tol=0.846
2024-07-11 04:11:42,142 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79 pTM=0.633 ipTM=0.18 tol=0.904
2024-07-11 04:11:48,031 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.2 pTM=0.631 ipTM=0.172 tol=0.994
2024-07-11 04:11:53,918 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.1 pTM=0.637 ipTM=0.191 tol=1.52
2024-07-11 04:11:59,806 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.4 pTM=0.635 ipTM=0.18 tol=1.36
2024-07-11 04:12:05,692 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.2 pTM=0.639 ipTM=0.197 tol=1.75
2024-07-11 04:12:11,578 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.2 pTM=0.634 ipTM=0.182 tol=0.933
2024-07-11 04:12:17,449 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.4 pTM=0.642 ipTM=0.21 tol=1.47
2024-07-11 04:12:23,336 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79.4 pTM=0.639 ipTM=0.196 tol=0.904
2024-07-11 04:12:29,222 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=79.6 pTM=0.645 ipTM=0.216 tol=0.617
2024-07-11 04:12:35,109 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=79.5 pTM=0.644 ipTM=0.209 tol=0.523
2024-07-11 04:12:40,991 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=79.4 pTM=0.645 ipTM=0.219 tol=0.754
2024-07-11 04:12:46,876 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=79.6 pTM=0.64 ipTM=0.199 tol=0.865
2024-07-11 04:12:52,754 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=79.4 pTM=0.648 ipTM=0.232 tol=0.931
2024-07-11 04:12:58,640 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=79.4 pTM=0.638 ipTM=0.194 tol=0.873
2024-07-11 04:13:04,523 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=79.5 pTM=0.645 ipTM=0.217 tol=0.717
2024-07-11 04:13:10,406 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=79.5 pTM=0.642 ipTM=0.208 tol=0.659
2024-07-11 04:13:16,296 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=79.5 pTM=0.646 ipTM=0.222 tol=0.63
2024-07-11 04:13:22,182 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=79.3 pTM=0.64 ipTM=0.205 tol=0.417
2024-07-11 04:13:22,182 alphafold2_multimer_v3_model_3_seed_000 took 135.4s (22 recycles)
2024-07-11 04:13:28,239 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.6 pTM=0.624 ipTM=0.185
2024-07-11 04:13:34,135 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.1 pTM=0.644 ipTM=0.186 tol=4.59
2024-07-11 04:13:40,033 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.4 pTM=0.643 ipTM=0.187 tol=2.53
2024-07-11 04:13:45,931 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.4 pTM=0.645 ipTM=0.199 tol=2.29
2024-07-11 04:13:51,827 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=79.6 pTM=0.645 ipTM=0.205 tol=1.14
2024-07-11 04:13:57,729 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.5 pTM=0.646 ipTM=0.209 tol=0.717
2024-07-11 04:14:03,621 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.8 pTM=0.647 ipTM=0.212 tol=0.84
2024-07-11 04:14:09,525 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.9 pTM=0.65 ipTM=0.223 tol=0.782
2024-07-11 04:14:15,427 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.9 pTM=0.648 ipTM=0.215 tol=0.683
2024-07-11 04:14:21,324 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.1 pTM=0.65 ipTM=0.22 tol=0.91
2024-07-11 04:14:27,220 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.1 pTM=0.646 ipTM=0.21 tol=0.858
2024-07-11 04:14:33,118 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80.1 pTM=0.652 ipTM=0.23 tol=1.13
2024-07-11 04:14:39,021 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80 pTM=0.646 ipTM=0.208 tol=1.63
2024-07-11 04:14:44,922 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.3 pTM=0.653 ipTM=0.231 tol=1.72
2024-07-11 04:14:50,828 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80 pTM=0.642 ipTM=0.188 tol=2.56
2024-07-11 04:14:56,730 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80.4 pTM=0.653 ipTM=0.232 tol=2.54
2024-07-11 04:15:02,633 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.1 pTM=0.644 ipTM=0.2 tol=2.22
2024-07-11 04:15:08,534 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.1 pTM=0.652 ipTM=0.229 tol=2.08
2024-07-11 04:15:14,438 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.9 pTM=0.646 ipTM=0.207 tol=1.53
2024-07-11 04:15:20,347 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.3 pTM=0.654 ipTM=0.234 tol=1.44
2024-07-11 04:15:26,253 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79.9 pTM=0.643 ipTM=0.198 tol=1.95
2024-07-11 04:15:32,157 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80.2 pTM=0.652 ipTM=0.229 tol=2.11
2024-07-11 04:15:38,064 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.1 pTM=0.646 ipTM=0.205 tol=1.87
2024-07-11 04:15:43,966 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80.1 pTM=0.654 ipTM=0.232 tol=1.77
2024-07-11 04:15:49,869 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=79.9 pTM=0.647 ipTM=0.205 tol=1.64
2024-07-11 04:15:55,773 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.2 pTM=0.654 ipTM=0.235 tol=1.73
2024-07-11 04:16:01,674 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79.9 pTM=0.641 ipTM=0.191 tol=2.43
2024-07-11 04:16:07,573 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.1 pTM=0.652 ipTM=0.227 tol=2.18
2024-07-11 04:16:13,475 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=79.9 pTM=0.642 ipTM=0.191 tol=2.13
2024-07-11 04:16:19,379 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.2 pTM=0.653 ipTM=0.231 tol=2.38
2024-07-11 04:16:25,283 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=79.9 pTM=0.642 ipTM=0.19 tol=2.61
2024-07-11 04:16:25,284 alphafold2_multimer_v3_model_4_seed_000 took 182.9s (30 recycles)
2024-07-11 04:16:31,346 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.5 pTM=0.626 ipTM=0.187
2024-07-11 04:16:37,237 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78 pTM=0.633 ipTM=0.174 tol=4.2
2024-07-11 04:16:43,134 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.3 pTM=0.645 ipTM=0.208 tol=1.37
2024-07-11 04:16:49,035 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.8 pTM=0.637 ipTM=0.178 tol=2.23
2024-07-11 04:16:54,931 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.7 pTM=0.639 ipTM=0.185 tol=0.892
2024-07-11 04:17:00,835 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.7 pTM=0.641 ipTM=0.19 tol=0.544
2024-07-11 04:17:06,736 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.8 pTM=0.644 ipTM=0.198 tol=0.43
2024-07-11 04:17:06,737 alphafold2_multimer_v3_model_5_seed_000 took 41.3s (6 recycles)
2024-07-11 04:17:06,913 reranking models by 'multimer' metric
2024-07-11 04:17:10,426 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 04:17:24,926 Relaxation took 18.0s
2024-07-11 04:17:24,927 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.3 pTM=0.64 ipTM=0.205
2024-07-11 04:17:41,592 Relaxation took 16.7s
2024-07-11 04:17:41,592 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.8 pTM=0.644 ipTM=0.198
2024-07-11 04:17:55,912 Relaxation took 14.3s
2024-07-11 04:17:55,912 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.9 pTM=0.642 ipTM=0.19
2024-07-11 04:18:09,983 Relaxation took 14.1s
2024-07-11 04:18:09,984 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.6 pTM=0.622 ipTM=0.164
2024-07-11 04:18:28,489 Relaxation took 18.5s
2024-07-11 04:18:28,489 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.3 pTM=0.622 ipTM=0.145
2024-07-11 04:18:29,530 Done