2024-07-11 04:22:41,850 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 04:22:42,150 Running on GPU
2024-07-11 04:22:45,619 Found 6 citations for tools or databases
2024-07-11 04:22:45,620 Query 1/1: LRC32_UPK1B (length 922)
2024-07-11 04:22:46,062 Sleeping for 6s. Reason: PENDING
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2024-07-11 04:24:55,268 Sleeping for 6s. Reason: RUNNING
2024-07-11 04:25:03,089 Sleeping for 9s. Reason: PENDING
2024-07-11 04:25:12,488 Sleeping for 7s. Reason: RUNNING
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2024-07-11 04:26:06,372 Sleeping for 5s. Reason: RUNNING
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2024-07-11 04:26:29,680 Setting max_seq=508, max_extra_seq=2048
2024-07-11 04:29:14,792 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79 pTM=0.637 ipTM=0.196
2024-07-11 04:29:32,444 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=81.1 pTM=0.633 ipTM=0.188 tol=6.63
2024-07-11 04:29:50,135 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=80.8 pTM=0.628 ipTM=0.213 tol=4.17
2024-07-11 04:30:07,847 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=80.6 pTM=0.629 ipTM=0.217 tol=1.17
2024-07-11 04:30:25,598 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.6 pTM=0.624 ipTM=0.214 tol=1.39
2024-07-11 04:30:43,388 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.9 pTM=0.628 ipTM=0.217 tol=1.19
2024-07-11 04:31:01,201 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80.8 pTM=0.625 ipTM=0.211 tol=0.69
2024-07-11 04:31:19,022 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80.5 pTM=0.625 ipTM=0.212 tol=0.539
2024-07-11 04:31:36,856 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.8 pTM=0.625 ipTM=0.21 tol=0.509
2024-07-11 04:31:54,685 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.6 pTM=0.624 ipTM=0.213 tol=0.688
2024-07-11 04:32:12,510 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.8 pTM=0.627 ipTM=0.214 tol=0.412
2024-07-11 04:32:12,511 alphafold2_multimer_v3_model_1_seed_000 took 336.3s (10 recycles)
2024-07-11 04:32:30,876 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.7 pTM=0.67 ipTM=0.339
2024-07-11 04:32:48,774 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.8 pTM=0.633 ipTM=0.176 tol=11.5
2024-07-11 04:33:06,623 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.2 pTM=0.644 ipTM=0.206 tol=7.09
2024-07-11 04:33:24,469 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.1 pTM=0.642 ipTM=0.203 tol=1.09
2024-07-11 04:33:42,314 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.1 pTM=0.643 ipTM=0.204 tol=0.58
2024-07-11 04:34:00,183 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.4 pTM=0.645 ipTM=0.204 tol=0.571
2024-07-11 04:34:18,041 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.4 pTM=0.643 ipTM=0.201 tol=0.791
2024-07-11 04:34:35,900 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.3 pTM=0.644 ipTM=0.2 tol=0.447
2024-07-11 04:34:35,901 alphafold2_multimer_v3_model_2_seed_000 took 142.9s (7 recycles)
2024-07-11 04:34:54,212 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=78.4 pTM=0.69 ipTM=0.433
2024-07-11 04:35:12,032 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79.8 pTM=0.641 ipTM=0.227 tol=3.39
2024-07-11 04:35:29,814 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=79.8 pTM=0.634 ipTM=0.214 tol=1.79
2024-07-11 04:35:47,638 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.6 pTM=0.629 ipTM=0.204 tol=2.5
2024-07-11 04:36:05,460 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79.6 pTM=0.631 ipTM=0.217 tol=1.86
2024-07-11 04:36:23,277 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.9 pTM=0.625 ipTM=0.193 tol=1.56
2024-07-11 04:36:41,087 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.9 pTM=0.626 ipTM=0.2 tol=1.4
2024-07-11 04:36:58,874 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.1 pTM=0.632 ipTM=0.247 tol=3.58
2024-07-11 04:37:16,675 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.8 pTM=0.626 ipTM=0.206 tol=3.62
2024-07-11 04:37:34,496 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.9 pTM=0.625 ipTM=0.205 tol=1.66
2024-07-11 04:37:52,332 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.4 pTM=0.618 ipTM=0.183 tol=1.39
2024-07-11 04:38:10,164 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79 pTM=0.611 ipTM=0.15 tol=10.1
2024-07-11 04:38:27,997 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=79.2 pTM=0.617 ipTM=0.176 tol=8.07
2024-07-11 04:38:45,824 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.4 pTM=0.609 ipTM=0.153 tol=8.45
2024-07-11 04:39:03,655 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.9 pTM=0.615 ipTM=0.168 tol=8.7
2024-07-11 04:39:21,469 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.3 pTM=0.614 ipTM=0.164 tol=9.57
2024-07-11 04:39:39,305 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.8 pTM=0.617 ipTM=0.176 tol=9.23
2024-07-11 04:39:57,141 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.8 pTM=0.613 ipTM=0.167 tol=1.68
2024-07-11 04:40:14,989 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=78.6 pTM=0.608 ipTM=0.153 tol=3.31
2024-07-11 04:40:32,813 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=78.8 pTM=0.611 ipTM=0.165 tol=4.64
2024-07-11 04:40:50,607 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=79.6 pTM=0.623 ipTM=0.201 tol=3.68
2024-07-11 04:41:08,419 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=79.3 pTM=0.622 ipTM=0.192 tol=2.04
2024-07-11 04:41:26,202 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=80 pTM=0.633 ipTM=0.246 tol=2.57
2024-07-11 04:41:44,002 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=79.6 pTM=0.626 ipTM=0.212 tol=3.29
2024-07-11 04:42:01,814 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=79.1 pTM=0.618 ipTM=0.179 tol=2.45
2024-07-11 04:42:19,632 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=79.2 pTM=0.628 ipTM=0.213 tol=3.65
2024-07-11 04:42:37,444 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=79.4 pTM=0.619 ipTM=0.184 tol=2.36
2024-07-11 04:42:55,264 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=79.7 pTM=0.634 ipTM=0.22 tol=1.65
2024-07-11 04:43:13,093 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=78.8 pTM=0.618 ipTM=0.183 tol=1.58
2024-07-11 04:43:30,893 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=79.6 pTM=0.63 ipTM=0.218 tol=2.28
2024-07-11 04:43:48,714 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=79.1 pTM=0.62 ipTM=0.19 tol=1.15
2024-07-11 04:43:48,715 alphafold2_multimer_v3_model_3_seed_000 took 552.3s (30 recycles)
2024-07-11 04:44:07,039 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.1 pTM=0.724 ipTM=0.564
2024-07-11 04:44:24,900 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.8 pTM=0.626 ipTM=0.175 tol=15.2
2024-07-11 04:44:42,752 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.1 pTM=0.626 ipTM=0.172 tol=5.33
2024-07-11 04:45:00,593 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.1 pTM=0.624 ipTM=0.167 tol=2.97
2024-07-11 04:45:18,430 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.1 pTM=0.627 ipTM=0.184 tol=0.835
2024-07-11 04:45:36,274 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.3 pTM=0.63 ipTM=0.185 tol=0.887
2024-07-11 04:45:54,108 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.7 pTM=0.627 ipTM=0.17 tol=1.28
2024-07-11 04:46:11,941 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.4 pTM=0.625 ipTM=0.18 tol=1.89
2024-07-11 04:46:29,780 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.4 pTM=0.629 ipTM=0.187 tol=1.01
2024-07-11 04:46:47,611 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=78.4 pTM=0.627 ipTM=0.188 tol=0.791
2024-07-11 04:47:05,442 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=78.3 pTM=0.628 ipTM=0.19 tol=0.735
2024-07-11 04:47:23,267 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=78.1 pTM=0.631 ipTM=0.191 tol=0.811
2024-07-11 04:47:41,102 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=78.1 pTM=0.629 ipTM=0.191 tol=0.796
2024-07-11 04:47:58,930 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=78.1 pTM=0.63 ipTM=0.192 tol=0.478
2024-07-11 04:47:58,931 alphafold2_multimer_v3_model_4_seed_000 took 249.7s (13 recycles)
2024-07-11 04:48:17,243 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.5 pTM=0.719 ipTM=0.533
2024-07-11 04:48:35,087 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.2 pTM=0.646 ipTM=0.242 tol=13.9
2024-07-11 04:48:52,930 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77 pTM=0.645 ipTM=0.243 tol=4.65
2024-07-11 04:49:10,753 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.6 pTM=0.644 ipTM=0.227 tol=4.61
2024-07-11 04:49:28,573 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.7 pTM=0.641 ipTM=0.216 tol=1.38
2024-07-11 04:49:46,396 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.2 pTM=0.637 ipTM=0.2 tol=3.17
2024-07-11 04:50:04,221 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.3 pTM=0.638 ipTM=0.206 tol=1.22
2024-07-11 04:50:22,032 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.2 pTM=0.638 ipTM=0.212 tol=1.81
2024-07-11 04:50:39,850 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.8 pTM=0.64 ipTM=0.22 tol=2.31
2024-07-11 04:50:57,643 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.6 pTM=0.644 ipTM=0.231 tol=4.72
2024-07-11 04:51:15,462 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.3 pTM=0.631 ipTM=0.194 tol=1.36
2024-07-11 04:51:33,282 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.2 pTM=0.626 ipTM=0.17 tol=3.18
2024-07-11 04:51:51,106 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.1 pTM=0.627 ipTM=0.175 tol=3.36
2024-07-11 04:52:08,928 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=77.9 pTM=0.623 ipTM=0.169 tol=3
2024-07-11 04:52:26,754 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.8 pTM=0.633 ipTM=0.201 tol=4.81
2024-07-11 04:52:44,580 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.1 pTM=0.634 ipTM=0.214 tol=2.43
2024-07-11 04:53:02,399 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=77.4 pTM=0.635 ipTM=0.197 tol=0.84
2024-07-11 04:53:20,219 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=77.8 pTM=0.637 ipTM=0.222 tol=2.66
2024-07-11 04:53:38,040 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.2 pTM=0.639 ipTM=0.224 tol=1.3
2024-07-11 04:53:55,869 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=78.2 pTM=0.638 ipTM=0.22 tol=0.967
2024-07-11 04:54:13,692 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=78.4 pTM=0.639 ipTM=0.222 tol=2.38
2024-07-11 04:54:31,522 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=78.4 pTM=0.636 ipTM=0.219 tol=1.02
2024-07-11 04:54:49,351 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=78.4 pTM=0.637 ipTM=0.211 tol=1.37
2024-07-11 04:55:07,186 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=78.3 pTM=0.639 ipTM=0.232 tol=1.96
2024-07-11 04:55:25,015 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=78.2 pTM=0.634 ipTM=0.202 tol=2.91
2024-07-11 04:55:42,852 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=78.6 pTM=0.638 ipTM=0.218 tol=2.49
2024-07-11 04:56:00,678 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=78.8 pTM=0.636 ipTM=0.206 tol=1.29
2024-07-11 04:56:18,506 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=78.3 pTM=0.631 ipTM=0.203 tol=1.49
2024-07-11 04:56:36,313 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=78.4 pTM=0.638 ipTM=0.215 tol=1.99
2024-07-11 04:56:54,136 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=78.8 pTM=0.634 ipTM=0.213 tol=1.61
2024-07-11 04:57:11,951 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=78.8 pTM=0.638 ipTM=0.219 tol=1.84
2024-07-11 04:57:11,952 alphafold2_multimer_v3_model_5_seed_000 took 552.5s (30 recycles)
2024-07-11 04:57:12,477 reranking models by 'multimer' metric
2024-07-11 04:57:16,018 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 04:57:44,735 Relaxation took 32.3s
2024-07-11 04:57:44,735 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.8 pTM=0.638 ipTM=0.219
2024-07-11 04:58:10,813 Relaxation took 26.1s
2024-07-11 04:58:10,814 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.8 pTM=0.627 ipTM=0.214
2024-07-11 04:58:34,070 Relaxation took 23.3s
2024-07-11 04:58:34,070 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.3 pTM=0.644 ipTM=0.2
2024-07-11 04:58:57,883 Relaxation took 23.8s
2024-07-11 04:58:57,883 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.1 pTM=0.63 ipTM=0.192
2024-07-11 04:59:21,351 Relaxation took 23.5s
2024-07-11 04:59:21,352 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.1 pTM=0.62 ipTM=0.19
2024-07-11 04:59:23,002 Done