2024-07-11 06:26:38,572 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 06:26:38,889 Running on GPU
2024-07-11 06:26:42,517 Found 6 citations for tools or databases
2024-07-11 06:26:42,517 Query 1/1: LYRM9_PMP22 (length 238)
2024-07-11 06:26:42,953 Sleeping for 7s. Reason: PENDING
2024-07-11 06:26:50,373 Sleeping for 8s. Reason: RUNNING
2024-07-11 06:26:58,785 Sleeping for 7s. Reason: RUNNING
2024-07-11 06:27:07,489 Sleeping for 6s. Reason: PENDING
2024-07-11 06:27:13,900 Sleeping for 7s. Reason: RUNNING
2024-07-11 06:27:21,296 Sleeping for 10s. Reason: RUNNING
2024-07-11 06:27:32,779 Setting max_seq=508, max_extra_seq=2048
2024-07-11 06:30:02,799 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=62.2 pTM=0.478 ipTM=0.0938
2024-07-11 06:30:05,090 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=64.2 pTM=0.464 ipTM=0.093 tol=1.91
2024-07-11 06:30:07,378 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.3 pTM=0.513 ipTM=0.081 tol=2.71
2024-07-11 06:30:09,666 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=71.2 pTM=0.527 ipTM=0.0783 tol=0.466
2024-07-11 06:30:09,666 alphafold2_multimer_v3_model_1_seed_000 took 151.9s (3 recycles)
2024-07-11 06:30:12,002 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74 pTM=0.543 ipTM=0.0681
2024-07-11 06:30:14,282 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=67.8 pTM=0.529 ipTM=0.191 tol=20.9
2024-07-11 06:30:16,571 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=72.7 pTM=0.576 ipTM=0.198 tol=1.04
2024-07-11 06:30:18,855 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74 pTM=0.598 ipTM=0.212 tol=0.891
2024-07-11 06:30:21,134 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73.6 pTM=0.589 ipTM=0.203 tol=0.565
2024-07-11 06:30:23,417 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.2 pTM=0.588 ipTM=0.199 tol=0.514
2024-07-11 06:30:25,698 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.8 pTM=0.589 ipTM=0.204 tol=0.563
2024-07-11 06:30:27,980 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.1 pTM=0.596 ipTM=0.209 tol=0.469
2024-07-11 06:30:27,980 alphafold2_multimer_v3_model_2_seed_000 took 18.3s (7 recycles)
2024-07-11 06:30:30,324 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.9 pTM=0.58 ipTM=0.162
2024-07-11 06:30:32,606 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=73.9 pTM=0.561 ipTM=0.185 tol=1.47
2024-07-11 06:30:34,888 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.3 pTM=0.549 ipTM=0.185 tol=0.506
2024-07-11 06:30:37,169 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=74.7 pTM=0.584 ipTM=0.203 tol=0.63
2024-07-11 06:30:39,454 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=75.1 pTM=0.587 ipTM=0.199 tol=0.347
2024-07-11 06:30:39,454 alphafold2_multimer_v3_model_3_seed_000 took 11.4s (4 recycles)
2024-07-11 06:30:41,801 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.1 pTM=0.598 ipTM=0.109
2024-07-11 06:30:44,083 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.8 pTM=0.576 ipTM=0.092 tol=1.48
2024-07-11 06:30:46,368 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.9 pTM=0.57 ipTM=0.0814 tol=0.999
2024-07-11 06:30:48,660 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.1 pTM=0.575 ipTM=0.0804 tol=0.499
2024-07-11 06:30:48,660 alphafold2_multimer_v3_model_4_seed_000 took 9.2s (3 recycles)
2024-07-11 06:30:50,999 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.7 pTM=0.621 ipTM=0.306
2024-07-11 06:30:53,278 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.7 pTM=0.609 ipTM=0.203 tol=1.03
2024-07-11 06:30:55,558 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=73.4 pTM=0.6 ipTM=0.186 tol=0.493
2024-07-11 06:30:55,558 alphafold2_multimer_v3_model_5_seed_000 took 6.8s (2 recycles)
2024-07-11 06:30:55,609 reranking models by 'multimer' metric
2024-07-11 06:30:56,176 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 06:31:06,266 Relaxation took 10.7s
2024-07-11 06:31:06,266 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.1 pTM=0.596 ipTM=0.209
2024-07-11 06:31:11,257 Relaxation took 5.0s
2024-07-11 06:31:11,257 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=75.1 pTM=0.587 ipTM=0.199
2024-07-11 06:31:17,014 Relaxation took 5.8s
2024-07-11 06:31:17,014 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=73.4 pTM=0.6 ipTM=0.186
2024-07-11 06:31:22,072 Relaxation took 5.1s
2024-07-11 06:31:22,072 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.1 pTM=0.575 ipTM=0.0804
2024-07-11 06:31:26,848 Relaxation took 4.8s
2024-07-11 06:31:26,849 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=71.2 pTM=0.527 ipTM=0.0783
2024-07-11 06:31:27,673 Done