2024-07-11 07:20:41,174 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3) 2024-07-11 07:20:41,512 Running on GPU 2024-07-11 07:20:45,009 Found 6 citations for tools or databases 2024-07-11 07:20:45,010 Query 1/1: MANBL_YD286 (length 223) 2024-07-11 07:20:45,466 Sleeping for 9s. Reason: PENDING 2024-07-11 07:20:54,923 Sleeping for 8s. Reason: RUNNING 2024-07-11 07:21:03,323 Sleeping for 6s. Reason: RUNNING 2024-07-11 07:21:09,732 Sleeping for 8s. Reason: RUNNING 2024-07-11 07:21:19,229 Sleeping for 8s. Reason: PENDING 2024-07-11 07:21:27,644 Sleeping for 7s. Reason: RUNNING 2024-07-11 07:21:35,911 Setting max_seq=508, max_extra_seq=1184 2024-07-11 07:24:12,242 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=34.9 pTM=0.26 ipTM=0.0923 2024-07-11 07:24:14,113 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=35.8 pTM=0.245 ipTM=0.0925 tol=3.73 2024-07-11 07:24:15,979 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=35.5 pTM=0.237 ipTM=0.0887 tol=5.26 2024-07-11 07:24:17,844 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=36.6 pTM=0.228 ipTM=0.092 tol=4.02 2024-07-11 07:24:19,709 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=36.1 pTM=0.22 ipTM=0.0952 tol=2.64 2024-07-11 07:24:21,573 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=36.1 pTM=0.214 ipTM=0.0934 tol=1.49 2024-07-11 07:24:23,438 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=35.8 pTM=0.215 ipTM=0.0901 tol=1.61 2024-07-11 07:24:25,302 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=36.5 pTM=0.219 ipTM=0.0906 tol=1.93 2024-07-11 07:24:27,168 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=36.2 pTM=0.215 ipTM=0.0911 tol=1.14 2024-07-11 07:24:29,032 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=36.8 pTM=0.216 ipTM=0.0894 tol=1.33 2024-07-11 07:24:30,897 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=36.1 pTM=0.21 ipTM=0.0924 tol=0.825 2024-07-11 07:24:32,761 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=35.9 pTM=0.214 ipTM=0.0897 tol=1.06 2024-07-11 07:24:34,626 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=36.2 pTM=0.21 ipTM=0.0932 tol=1.03 2024-07-11 07:24:36,491 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=36.2 pTM=0.207 ipTM=0.0919 tol=1.04 2024-07-11 07:24:38,356 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=36.4 pTM=0.206 ipTM=0.093 tol=1.33 2024-07-11 07:24:40,221 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=35.9 pTM=0.213 ipTM=0.093 tol=1.67 2024-07-11 07:24:42,085 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=35.9 pTM=0.21 ipTM=0.0927 tol=1.28 2024-07-11 07:24:43,950 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=36 pTM=0.209 ipTM=0.0912 tol=0.806 2024-07-11 07:24:45,816 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=36.2 pTM=0.212 ipTM=0.0926 tol=1.16 2024-07-11 07:24:47,682 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=36.6 pTM=0.209 ipTM=0.0923 tol=1.83 2024-07-11 07:24:49,550 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=36.6 pTM=0.201 ipTM=0.0981 tol=1.4 2024-07-11 07:24:51,417 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=36.4 pTM=0.213 ipTM=0.0911 tol=1.2 2024-07-11 07:24:53,284 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=36.2 pTM=0.211 ipTM=0.0936 tol=1.58 2024-07-11 07:24:55,149 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=36.4 pTM=0.215 ipTM=0.0911 tol=1.89 2024-07-11 07:24:57,014 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=36.5 pTM=0.21 ipTM=0.0916 tol=1.5 2024-07-11 07:24:58,879 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=36.2 pTM=0.206 ipTM=0.092 tol=0.662 2024-07-11 07:25:00,745 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=36.3 pTM=0.211 ipTM=0.0919 tol=1.96 2024-07-11 07:25:02,609 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=36.6 pTM=0.216 ipTM=0.0928 tol=1.01 2024-07-11 07:25:04,474 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=36.3 pTM=0.209 ipTM=0.094 tol=0.881 2024-07-11 07:25:06,341 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=35.7 pTM=0.208 ipTM=0.0932 tol=1.46 2024-07-11 07:25:08,207 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=35.9 pTM=0.211 ipTM=0.0946 tol=1.18 2024-07-11 07:25:08,208 alphafold2_multimer_v3_model_1_seed_000 took 207.2s (30 recycles) 2024-07-11 07:25:10,132 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=35.6 pTM=0.257 ipTM=0.111 2024-07-11 07:25:12,000 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=36.8 pTM=0.224 ipTM=0.12 tol=6.08 2024-07-11 07:25:13,867 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=36.4 pTM=0.214 ipTM=0.122 tol=3.38 2024-07-11 07:25:15,733 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=37.2 pTM=0.218 ipTM=0.125 tol=5.29 2024-07-11 07:25:17,600 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=36.6 pTM=0.216 ipTM=0.123 tol=2.23 2024-07-11 07:25:19,467 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=37 pTM=0.216 ipTM=0.122 tol=1.64 2024-07-11 07:25:21,334 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=37.2 pTM=0.214 ipTM=0.122 tol=3.88 2024-07-11 07:25:23,201 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=37.6 pTM=0.213 ipTM=0.119 tol=6.05 2024-07-11 07:25:25,069 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=36.9 pTM=0.214 ipTM=0.121 tol=1.48 2024-07-11 07:25:26,935 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=37.5 pTM=0.217 ipTM=0.125 tol=0.73 2024-07-11 07:25:28,802 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=37.2 pTM=0.217 ipTM=0.125 tol=1.39 2024-07-11 07:25:30,669 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=37.2 pTM=0.217 ipTM=0.125 tol=0.867 2024-07-11 07:25:32,535 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=37.4 pTM=0.219 ipTM=0.128 tol=1.22 2024-07-11 07:25:34,401 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=37.5 pTM=0.215 ipTM=0.123 tol=1.73 2024-07-11 07:25:36,269 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=37.2 pTM=0.216 ipTM=0.124 tol=1.99 2024-07-11 07:25:38,135 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=37.5 pTM=0.221 ipTM=0.131 tol=3.77 2024-07-11 07:25:40,000 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=37.3 pTM=0.217 ipTM=0.126 tol=1.84 2024-07-11 07:25:41,866 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=36.9 pTM=0.215 ipTM=0.125 tol=1.99 2024-07-11 07:25:43,732 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=37.2 pTM=0.218 ipTM=0.128 tol=1.15 2024-07-11 07:25:45,599 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=37.8 pTM=0.216 ipTM=0.125 tol=1.56 2024-07-11 07:25:47,466 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=37.4 pTM=0.217 ipTM=0.124 tol=1.09 2024-07-11 07:25:49,332 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=37 pTM=0.216 ipTM=0.122 tol=1.72 2024-07-11 07:25:51,198 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=37.2 pTM=0.218 ipTM=0.129 tol=1.13 2024-07-11 07:25:53,064 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=37.2 pTM=0.216 ipTM=0.124 tol=0.816 2024-07-11 07:25:54,928 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=37.7 pTM=0.217 ipTM=0.126 tol=0.796 2024-07-11 07:25:56,793 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=37.3 pTM=0.215 ipTM=0.123 tol=1.21 2024-07-11 07:25:58,660 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=37.3 pTM=0.219 ipTM=0.127 tol=1.21 2024-07-11 07:26:00,525 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=37.7 pTM=0.217 ipTM=0.126 tol=0.803 2024-07-11 07:26:02,391 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=37.7 pTM=0.217 ipTM=0.126 tol=1 2024-07-11 07:26:04,256 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=37.6 pTM=0.219 ipTM=0.127 tol=0.923 2024-07-11 07:26:06,122 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=37.2 pTM=0.216 ipTM=0.125 tol=0.936 2024-07-11 07:26:06,123 alphafold2_multimer_v3_model_2_seed_000 took 57.9s (30 recycles) 2024-07-11 07:26:08,044 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=36 pTM=0.248 ipTM=0.0788 2024-07-11 07:26:09,920 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=37.2 pTM=0.232 ipTM=0.0843 tol=8.97 2024-07-11 07:26:11,797 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=37.2 pTM=0.234 ipTM=0.0803 tol=3.55 2024-07-11 07:26:13,673 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=36.7 pTM=0.227 ipTM=0.0776 tol=2.82 2024-07-11 07:26:15,550 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=36.8 pTM=0.23 ipTM=0.0833 tol=1.88 2024-07-11 07:26:17,426 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=37 pTM=0.229 ipTM=0.0788 tol=2.43 2024-07-11 07:26:19,302 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=36.5 pTM=0.231 ipTM=0.0811 tol=2.41 2024-07-11 07:26:21,177 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=37.3 pTM=0.235 ipTM=0.0854 tol=2.48 2024-07-11 07:26:23,054 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=36.9 pTM=0.229 ipTM=0.0877 tol=1.54 2024-07-11 07:26:24,929 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=37.7 pTM=0.239 ipTM=0.0933 tol=3.72 2024-07-11 07:26:26,806 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=37.1 pTM=0.236 ipTM=0.0889 tol=5.45 2024-07-11 07:26:28,681 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=37.1 pTM=0.235 ipTM=0.0886 tol=7.2 2024-07-11 07:26:30,558 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=37.6 pTM=0.236 ipTM=0.0942 tol=2.65 2024-07-11 07:26:32,432 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=37.2 pTM=0.233 ipTM=0.0872 tol=3.53 2024-07-11 07:26:34,308 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=36.2 pTM=0.226 ipTM=0.081 tol=3.09 2024-07-11 07:26:36,183 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=36.7 pTM=0.229 ipTM=0.0861 tol=2.82 2024-07-11 07:26:38,059 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=36.3 pTM=0.222 ipTM=0.0837 tol=1.84 2024-07-11 07:26:39,934 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=36.4 pTM=0.226 ipTM=0.0832 tol=3.28 2024-07-11 07:26:41,811 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=36.7 pTM=0.23 ipTM=0.0897 tol=2.71 2024-07-11 07:26:43,687 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=37.1 pTM=0.225 ipTM=0.0834 tol=3.33 2024-07-11 07:26:45,564 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=36.7 pTM=0.22 ipTM=0.0837 tol=2.03 2024-07-11 07:26:47,438 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=37.1 pTM=0.24 ipTM=0.0871 tol=3.01 2024-07-11 07:26:49,315 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=37 pTM=0.236 ipTM=0.0837 tol=2.93 2024-07-11 07:26:51,190 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=37.3 pTM=0.231 ipTM=0.0869 tol=3.43 2024-07-11 07:26:53,066 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=36.9 pTM=0.231 ipTM=0.0938 tol=2.13 2024-07-11 07:26:54,942 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=37.5 pTM=0.231 ipTM=0.0934 tol=4.48 2024-07-11 07:26:56,819 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=37.3 pTM=0.236 ipTM=0.0917 tol=3.51 2024-07-11 07:26:58,695 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=37.1 pTM=0.233 ipTM=0.0861 tol=2.25 2024-07-11 07:27:00,571 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=37.2 pTM=0.229 ipTM=0.0873 tol=1.78 2024-07-11 07:27:02,446 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=36.5 pTM=0.234 ipTM=0.0859 tol=4.34 2024-07-11 07:27:04,322 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=36.8 pTM=0.237 ipTM=0.0846 tol=2.1 2024-07-11 07:27:04,322 alphafold2_multimer_v3_model_3_seed_000 took 58.2s (30 recycles) 2024-07-11 07:27:06,235 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=36.3 pTM=0.245 ipTM=0.133 2024-07-11 07:27:08,104 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=36.8 pTM=0.227 ipTM=0.134 tol=3.86 2024-07-11 07:27:09,973 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=36.2 pTM=0.231 ipTM=0.136 tol=3.42 2024-07-11 07:27:11,842 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=36.3 pTM=0.234 ipTM=0.137 tol=3.76 2024-07-11 07:27:13,711 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=36.8 pTM=0.229 ipTM=0.129 tol=1.97 2024-07-11 07:27:15,579 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=37.1 pTM=0.231 ipTM=0.132 tol=2.92 2024-07-11 07:27:17,448 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=37 pTM=0.229 ipTM=0.13 tol=3.21 2024-07-11 07:27:19,316 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=37.2 pTM=0.233 ipTM=0.134 tol=2.91 2024-07-11 07:27:21,185 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=37.3 pTM=0.234 ipTM=0.138 tol=2.63 2024-07-11 07:27:23,053 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=37.5 pTM=0.234 ipTM=0.136 tol=1.56 2024-07-11 07:27:24,922 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=37.3 pTM=0.235 ipTM=0.139 tol=5.94 2024-07-11 07:27:26,790 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=37.6 pTM=0.234 ipTM=0.139 tol=6.27 2024-07-11 07:27:28,660 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=37.7 pTM=0.233 ipTM=0.138 tol=1.5 2024-07-11 07:27:30,530 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=37.7 pTM=0.236 ipTM=0.141 tol=2.99 2024-07-11 07:27:32,399 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=38 pTM=0.233 ipTM=0.138 tol=2.08 2024-07-11 07:27:34,266 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=37.1 pTM=0.233 ipTM=0.137 tol=2.91 2024-07-11 07:27:36,135 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=37.2 pTM=0.235 ipTM=0.139 tol=3.53 2024-07-11 07:27:38,003 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=37.4 pTM=0.234 ipTM=0.138 tol=1.55 2024-07-11 07:27:39,872 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=37.7 pTM=0.237 ipTM=0.144 tol=1.48 2024-07-11 07:27:41,741 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=38.1 pTM=0.236 ipTM=0.141 tol=1.81 2024-07-11 07:27:43,610 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=38 pTM=0.238 ipTM=0.145 tol=1.92 2024-07-11 07:27:45,477 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=38.2 pTM=0.236 ipTM=0.139 tol=2.9 2024-07-11 07:27:47,346 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=37.7 pTM=0.237 ipTM=0.141 tol=3.37 2024-07-11 07:27:49,214 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=37.8 pTM=0.233 ipTM=0.138 tol=1.88 2024-07-11 07:27:51,080 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=37.8 pTM=0.235 ipTM=0.138 tol=1.63 2024-07-11 07:27:52,948 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=37.8 pTM=0.233 ipTM=0.135 tol=1.68 2024-07-11 07:27:54,815 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=37.4 pTM=0.231 ipTM=0.136 tol=1.85 2024-07-11 07:27:56,682 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=37.2 pTM=0.232 ipTM=0.136 tol=1.38 2024-07-11 07:27:58,550 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=38 pTM=0.236 ipTM=0.14 tol=1.79 2024-07-11 07:28:00,419 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=37.5 pTM=0.235 ipTM=0.139 tol=2.07 2024-07-11 07:28:02,288 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=37.8 pTM=0.233 ipTM=0.137 tol=2.29 2024-07-11 07:28:02,288 alphafold2_multimer_v3_model_4_seed_000 took 57.9s (30 recycles) 2024-07-11 07:28:04,206 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=34.6 pTM=0.261 ipTM=0.0848 2024-07-11 07:28:06,077 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=35 pTM=0.245 ipTM=0.0823 tol=5.06 2024-07-11 07:28:07,949 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=33.2 pTM=0.229 ipTM=0.0826 tol=5.62 2024-07-11 07:28:09,819 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=33.7 pTM=0.229 ipTM=0.0807 tol=3.16 2024-07-11 07:28:11,692 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=32.7 pTM=0.224 ipTM=0.0851 tol=3.7 2024-07-11 07:28:13,561 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=33.8 pTM=0.23 ipTM=0.0811 tol=2.85 2024-07-11 07:28:15,431 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=33.4 pTM=0.228 ipTM=0.0807 tol=3.65 2024-07-11 07:28:17,299 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=33.1 pTM=0.226 ipTM=0.0797 tol=2.58 2024-07-11 07:28:19,168 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=33.3 pTM=0.224 ipTM=0.0838 tol=2.9 2024-07-11 07:28:21,037 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=33.9 pTM=0.226 ipTM=0.08 tol=2.7 2024-07-11 07:28:22,906 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=33.9 pTM=0.224 ipTM=0.0834 tol=2.91 2024-07-11 07:28:24,775 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=34.9 pTM=0.231 ipTM=0.0812 tol=2.91 2024-07-11 07:28:26,645 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=34.6 pTM=0.23 ipTM=0.0869 tol=2.08 2024-07-11 07:28:28,514 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=34.8 pTM=0.228 ipTM=0.0829 tol=2.09 2024-07-11 07:28:30,384 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=34.6 pTM=0.232 ipTM=0.0862 tol=1.54 2024-07-11 07:28:32,252 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=34.6 pTM=0.229 ipTM=0.0834 tol=1.82 2024-07-11 07:28:34,120 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=33.4 pTM=0.222 ipTM=0.0885 tol=3.76 2024-07-11 07:28:35,988 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=34.3 pTM=0.227 ipTM=0.0835 tol=3.25 2024-07-11 07:28:37,858 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=34.5 pTM=0.233 ipTM=0.0887 tol=3.11 2024-07-11 07:28:39,727 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=34.8 pTM=0.23 ipTM=0.0867 tol=1.83 2024-07-11 07:28:41,597 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=34.8 pTM=0.233 ipTM=0.0913 tol=1.99 2024-07-11 07:28:43,467 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=34.2 pTM=0.23 ipTM=0.0891 tol=1.85 2024-07-11 07:28:45,337 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=34 pTM=0.23 ipTM=0.0905 tol=2.17 2024-07-11 07:28:47,207 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=34.5 pTM=0.235 ipTM=0.0867 tol=2.28 2024-07-11 07:28:49,077 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=34.7 pTM=0.237 ipTM=0.0915 tol=1.59 2024-07-11 07:28:50,948 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=34.8 pTM=0.235 ipTM=0.091 tol=4.16 2024-07-11 07:28:52,819 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=34.2 pTM=0.24 ipTM=0.089 tol=1.77 2024-07-11 07:28:54,690 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=34.1 pTM=0.234 ipTM=0.09 tol=2.02 2024-07-11 07:28:56,560 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=34.1 pTM=0.231 ipTM=0.092 tol=2.07 2024-07-11 07:28:58,431 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=33.7 pTM=0.227 ipTM=0.0901 tol=1.91 2024-07-11 07:29:00,302 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=34.1 pTM=0.229 ipTM=0.0876 tol=2.74 2024-07-11 07:29:00,302 alphafold2_multimer_v3_model_5_seed_000 took 58.0s (30 recycles) 2024-07-11 07:29:00,346 reranking models by 'multimer' metric 2024-07-11 07:29:00,878 Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead. 2024-07-11 07:29:14,926 Relaxation took 14.6s 2024-07-11 07:29:14,927 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=37.8 pTM=0.233 ipTM=0.137 2024-07-11 07:29:20,920 Relaxation took 6.0s 2024-07-11 07:29:20,920 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=37.2 pTM=0.216 ipTM=0.125 2024-07-11 07:29:25,073 Relaxation took 4.2s 2024-07-11 07:29:25,073 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=35.9 pTM=0.211 ipTM=0.0946 2024-07-11 07:29:32,278 Relaxation took 7.2s 2024-07-11 07:29:32,278 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=34.1 pTM=0.229 ipTM=0.0876 2024-07-11 07:29:43,750 Relaxation took 11.5s 2024-07-11 07:29:43,750 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=36.8 pTM=0.237 ipTM=0.0846 2024-07-11 07:29:44,579 Done