2024-07-11 07:53:07,665 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 07:53:07,970 Running on GPU
2024-07-11 07:53:11,523 Found 6 citations for tools or databases
2024-07-11 07:53:11,523 Query 1/1: MCHL1_R13P3 (length 188)
2024-07-11 07:53:11,966 Sleeping for 10s. Reason: PENDING
2024-07-11 07:53:22,391 Sleeping for 9s. Reason: RUNNING
2024-07-11 07:53:33,100 Sleeping for 10s. Reason: PENDING
2024-07-11 07:53:44,434 Setting max_seq=508, max_extra_seq=2048
2024-07-11 07:55:50,521 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=45.8 pTM=0.319 ipTM=0.116
2024-07-11 07:55:52,436 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=49.8 pTM=0.345 ipTM=0.0792 tol=10.7
2024-07-11 07:55:54,349 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=50.6 pTM=0.357 ipTM=0.0785 tol=3.45
2024-07-11 07:55:56,260 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=49.9 pTM=0.359 ipTM=0.0839 tol=2.67
2024-07-11 07:55:58,171 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=50.4 pTM=0.36 ipTM=0.084 tol=1.88
2024-07-11 07:56:00,083 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=50.5 pTM=0.354 ipTM=0.0892 tol=2.22
2024-07-11 07:56:01,995 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=49.5 pTM=0.35 ipTM=0.0916 tol=1.86
2024-07-11 07:56:03,907 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=48.8 pTM=0.345 ipTM=0.095 tol=2.06
2024-07-11 07:56:05,819 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=49.4 pTM=0.347 ipTM=0.0968 tol=1.78
2024-07-11 07:56:07,730 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=49.2 pTM=0.349 ipTM=0.0959 tol=1.85
2024-07-11 07:56:09,641 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=49.9 pTM=0.36 ipTM=0.0966 tol=1.41
2024-07-11 07:56:11,554 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=48.2 pTM=0.35 ipTM=0.094 tol=3.29
2024-07-11 07:56:13,465 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=50.2 pTM=0.354 ipTM=0.0953 tol=2.51
2024-07-11 07:56:15,377 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=48.9 pTM=0.352 ipTM=0.095 tol=1.1
2024-07-11 07:56:17,288 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=48.7 pTM=0.34 ipTM=0.0918 tol=1.34
2024-07-11 07:56:19,199 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=49 pTM=0.35 ipTM=0.0942 tol=1.53
2024-07-11 07:56:21,110 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=48.8 pTM=0.343 ipTM=0.0917 tol=1.67
2024-07-11 07:56:23,022 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=49.4 pTM=0.349 ipTM=0.0948 tol=0.586
2024-07-11 07:56:24,937 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=50.8 pTM=0.352 ipTM=0.0919 tol=1.91
2024-07-11 07:56:26,851 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=50.6 pTM=0.354 ipTM=0.0901 tol=0.918
2024-07-11 07:56:28,763 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=50.4 pTM=0.357 ipTM=0.0907 tol=1.08
2024-07-11 07:56:30,673 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=50.5 pTM=0.358 ipTM=0.0906 tol=1.1
2024-07-11 07:56:32,584 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=49.9 pTM=0.353 ipTM=0.0898 tol=0.801
2024-07-11 07:56:34,498 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=50.9 pTM=0.358 ipTM=0.0895 tol=0.711
2024-07-11 07:56:36,414 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=51.2 pTM=0.361 ipTM=0.0887 tol=1.02
2024-07-11 07:56:38,327 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=50.5 pTM=0.355 ipTM=0.0917 tol=0.978
2024-07-11 07:56:40,237 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=50.7 pTM=0.354 ipTM=0.0892 tol=0.662
2024-07-11 07:56:42,148 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=50.2 pTM=0.356 ipTM=0.0906 tol=0.544
2024-07-11 07:56:44,058 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=49.8 pTM=0.357 ipTM=0.0928 tol=1.34
2024-07-11 07:56:45,969 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=50.6 pTM=0.361 ipTM=0.0918 tol=0.825
2024-07-11 07:56:47,882 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=49.9 pTM=0.353 ipTM=0.0903 tol=0.727
2024-07-11 07:56:47,882 alphafold2_multimer_v3_model_1_seed_000 took 178.6s (30 recycles)
2024-07-11 07:56:49,827 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=48.2 pTM=0.337 ipTM=0.0876
2024-07-11 07:56:51,736 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=50.7 pTM=0.363 ipTM=0.104 tol=9.31
2024-07-11 07:56:53,646 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=52 pTM=0.358 ipTM=0.0998 tol=1.79
2024-07-11 07:56:55,556 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=50.6 pTM=0.361 ipTM=0.106 tol=2.17
2024-07-11 07:56:57,466 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=51.8 pTM=0.371 ipTM=0.113 tol=1.19
2024-07-11 07:56:59,378 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=52.6 pTM=0.371 ipTM=0.115 tol=0.639
2024-07-11 07:57:01,287 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=51.4 pTM=0.376 ipTM=0.118 tol=0.758
2024-07-11 07:57:03,196 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=51.3 pTM=0.373 ipTM=0.115 tol=0.341
2024-07-11 07:57:03,197 alphafold2_multimer_v3_model_2_seed_000 took 15.3s (7 recycles)
2024-07-11 07:57:05,145 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=50.1 pTM=0.393 ipTM=0.144
2024-07-11 07:57:07,054 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=51.8 pTM=0.395 ipTM=0.167 tol=3.38
2024-07-11 07:57:08,964 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=51.9 pTM=0.387 ipTM=0.142 tol=2.65
2024-07-11 07:57:10,874 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=51 pTM=0.394 ipTM=0.143 tol=4.05
2024-07-11 07:57:12,783 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=50.9 pTM=0.396 ipTM=0.124 tol=2.37
2024-07-11 07:57:14,693 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=51.7 pTM=0.411 ipTM=0.13 tol=1.69
2024-07-11 07:57:16,602 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=51.1 pTM=0.418 ipTM=0.141 tol=1.03
2024-07-11 07:57:18,510 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=51.1 pTM=0.419 ipTM=0.145 tol=0.569
2024-07-11 07:57:20,419 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=51.3 pTM=0.417 ipTM=0.139 tol=0.657
2024-07-11 07:57:22,329 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=51 pTM=0.411 ipTM=0.145 tol=0.523
2024-07-11 07:57:24,238 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=51 pTM=0.414 ipTM=0.141 tol=0.488
2024-07-11 07:57:24,239 alphafold2_multimer_v3_model_3_seed_000 took 21.0s (10 recycles)
2024-07-11 07:57:26,184 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=49.3 pTM=0.344 ipTM=0.0911
2024-07-11 07:57:28,095 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=51.4 pTM=0.356 ipTM=0.098 tol=8.85
2024-07-11 07:57:30,006 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=51.8 pTM=0.357 ipTM=0.0875 tol=3
2024-07-11 07:57:31,920 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=51.3 pTM=0.363 ipTM=0.0961 tol=2.98
2024-07-11 07:57:33,833 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=51.2 pTM=0.37 ipTM=0.0916 tol=3.49
2024-07-11 07:57:35,745 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=52.6 pTM=0.388 ipTM=0.0991 tol=3.48
2024-07-11 07:57:37,655 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=51.6 pTM=0.392 ipTM=0.0909 tol=3.13
2024-07-11 07:57:39,565 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=50.7 pTM=0.384 ipTM=0.0991 tol=2
2024-07-11 07:57:41,476 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=51.6 pTM=0.389 ipTM=0.0942 tol=2.87
2024-07-11 07:57:43,386 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=51.3 pTM=0.385 ipTM=0.097 tol=1.46
2024-07-11 07:57:45,296 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=51.1 pTM=0.39 ipTM=0.102 tol=1.33
2024-07-11 07:57:47,206 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=51.4 pTM=0.385 ipTM=0.0989 tol=1.8
2024-07-11 07:57:49,117 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=53 pTM=0.395 ipTM=0.0999 tol=2.26
2024-07-11 07:57:51,028 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=51.3 pTM=0.389 ipTM=0.104 tol=1.65
2024-07-11 07:57:52,938 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=52.1 pTM=0.388 ipTM=0.101 tol=0.98
2024-07-11 07:57:54,849 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=51.7 pTM=0.386 ipTM=0.105 tol=1.13
2024-07-11 07:57:56,760 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=51.8 pTM=0.39 ipTM=0.0959 tol=0.943
2024-07-11 07:57:58,671 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=52.3 pTM=0.392 ipTM=0.0925 tol=1.6
2024-07-11 07:58:00,581 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=51.9 pTM=0.389 ipTM=0.0902 tol=2.07
2024-07-11 07:58:02,492 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=51.7 pTM=0.397 ipTM=0.0925 tol=2.38
2024-07-11 07:58:04,402 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=52.2 pTM=0.395 ipTM=0.0941 tol=1.32
2024-07-11 07:58:06,316 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=51.4 pTM=0.392 ipTM=0.105 tol=1.45
2024-07-11 07:58:08,227 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=51.8 pTM=0.392 ipTM=0.0934 tol=3.53
2024-07-11 07:58:10,137 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=52.6 pTM=0.397 ipTM=0.0911 tol=1.64
2024-07-11 07:58:12,048 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=53.2 pTM=0.401 ipTM=0.0921 tol=2.51
2024-07-11 07:58:13,959 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=52.4 pTM=0.4 ipTM=0.0949 tol=2.86
2024-07-11 07:58:15,870 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=52.9 pTM=0.398 ipTM=0.0898 tol=3.27
2024-07-11 07:58:17,781 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=52.3 pTM=0.398 ipTM=0.09 tol=2.71
2024-07-11 07:58:19,692 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=52.5 pTM=0.394 ipTM=0.09 tol=2.27
2024-07-11 07:58:21,603 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=52.3 pTM=0.396 ipTM=0.0935 tol=1.13
2024-07-11 07:58:23,514 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=51.8 pTM=0.387 ipTM=0.0927 tol=1.28
2024-07-11 07:58:23,514 alphafold2_multimer_v3_model_4_seed_000 took 59.2s (30 recycles)
2024-07-11 07:58:25,460 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=47.9 pTM=0.359 ipTM=0.0929
2024-07-11 07:58:27,371 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=50.1 pTM=0.355 ipTM=0.0701 tol=5.34
2024-07-11 07:58:29,282 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=50.2 pTM=0.356 ipTM=0.0687 tol=4.34
2024-07-11 07:58:31,191 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=48.6 pTM=0.361 ipTM=0.0743 tol=4.25
2024-07-11 07:58:33,102 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=49.4 pTM=0.367 ipTM=0.0728 tol=1.78
2024-07-11 07:58:35,013 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=50.1 pTM=0.369 ipTM=0.0728 tol=1.95
2024-07-11 07:58:36,923 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=48.9 pTM=0.375 ipTM=0.0765 tol=1.36
2024-07-11 07:58:38,832 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=48.8 pTM=0.376 ipTM=0.0779 tol=1.08
2024-07-11 07:58:40,745 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=49 pTM=0.381 ipTM=0.0793 tol=1.37
2024-07-11 07:58:42,656 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=48.9 pTM=0.38 ipTM=0.0785 tol=1.16
2024-07-11 07:58:44,566 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=49.2 pTM=0.383 ipTM=0.079 tol=1.19
2024-07-11 07:58:46,476 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=48.8 pTM=0.378 ipTM=0.0782 tol=1.53
2024-07-11 07:58:48,386 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=49.7 pTM=0.385 ipTM=0.0774 tol=1.56
2024-07-11 07:58:50,296 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=48.2 pTM=0.382 ipTM=0.0812 tol=1.91
2024-07-11 07:58:52,205 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=48.4 pTM=0.374 ipTM=0.0795 tol=1.08
2024-07-11 07:58:54,117 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=47.6 pTM=0.368 ipTM=0.0789 tol=1.5
2024-07-11 07:58:56,030 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=48.5 pTM=0.378 ipTM=0.0798 tol=1.8
2024-07-11 07:58:57,943 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=48.7 pTM=0.378 ipTM=0.0794 tol=1.16
2024-07-11 07:58:59,855 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=49 pTM=0.378 ipTM=0.0791 tol=1.59
2024-07-11 07:59:01,764 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=49.4 pTM=0.384 ipTM=0.0789 tol=1.46
2024-07-11 07:59:03,674 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=49.8 pTM=0.386 ipTM=0.0782 tol=1.15
2024-07-11 07:59:05,583 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=49 pTM=0.383 ipTM=0.0786 tol=1.55
2024-07-11 07:59:07,494 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=49.4 pTM=0.383 ipTM=0.0778 tol=1.9
2024-07-11 07:59:09,403 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=50.1 pTM=0.379 ipTM=0.0761 tol=1.57
2024-07-11 07:59:11,314 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=50.8 pTM=0.388 ipTM=0.0778 tol=2.58
2024-07-11 07:59:13,226 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=50.4 pTM=0.384 ipTM=0.076 tol=1.7
2024-07-11 07:59:15,140 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=50 pTM=0.383 ipTM=0.0772 tol=2.15
2024-07-11 07:59:17,051 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=49.9 pTM=0.384 ipTM=0.0798 tol=1.75
2024-07-11 07:59:18,962 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=48.7 pTM=0.369 ipTM=0.0773 tol=1.35
2024-07-11 07:59:20,872 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=49.8 pTM=0.38 ipTM=0.0776 tol=1.41
2024-07-11 07:59:22,782 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=49.3 pTM=0.379 ipTM=0.0776 tol=1.18
2024-07-11 07:59:22,782 alphafold2_multimer_v3_model_5_seed_000 took 59.2s (30 recycles)
2024-07-11 07:59:22,816 reranking models by 'multimer' metric
2024-07-11 07:59:25,351 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 07:59:37,751 Relaxation took 14.9s
2024-07-11 07:59:37,751 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=51 pTM=0.414 ipTM=0.141
2024-07-11 07:59:47,144 Relaxation took 9.4s
2024-07-11 07:59:47,144 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=51.3 pTM=0.373 ipTM=0.115
2024-07-11 07:59:55,848 Relaxation took 8.7s
2024-07-11 07:59:55,848 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=51.8 pTM=0.387 ipTM=0.0927
2024-07-11 07:59:59,677 Relaxation took 3.8s
2024-07-11 07:59:59,677 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=49.9 pTM=0.353 ipTM=0.0903
2024-07-11 08:00:03,442 Relaxation took 3.8s
2024-07-11 08:00:03,442 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=49.3 pTM=0.379 ipTM=0.0776
2024-07-11 08:00:04,410 Done