2024-07-11 10:23:17,318 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 10:23:17,646 Running on GPU
2024-07-11 10:23:21,359 Found 6 citations for tools or databases
2024-07-11 10:23:21,359 Query 1/1: MOB3C_PDE12 (length 825)
2024-07-11 10:23:21,834 Sleeping for 10s. Reason: PENDING
2024-07-11 10:23:32,256 Sleeping for 7s. Reason: RUNNING
2024-07-11 10:23:39,656 Sleeping for 7s. Reason: RUNNING
2024-07-11 10:23:47,054 Sleeping for 8s. Reason: RUNNING
2024-07-11 10:23:55,453 Sleeping for 6s. Reason: RUNNING
2024-07-11 10:24:01,852 Sleeping for 8s. Reason: RUNNING
2024-07-11 10:24:10,264 Sleeping for 10s. Reason: RUNNING
2024-07-11 10:24:20,673 Sleeping for 9s. Reason: RUNNING
2024-07-11 10:24:30,090 Sleeping for 8s. Reason: RUNNING
2024-07-11 10:24:38,540 Sleeping for 10s. Reason: RUNNING
2024-07-11 10:24:48,976 Sleeping for 5s. Reason: RUNNING
2024-07-11 10:24:56,133 Sleeping for 6s. Reason: PENDING
2024-07-11 10:25:02,542 Sleeping for 10s. Reason: RUNNING
2024-07-11 10:25:12,940 Sleeping for 10s. Reason: RUNNING
2024-07-11 10:25:23,362 Sleeping for 9s. Reason: RUNNING
2024-07-11 10:25:32,773 Sleeping for 9s. Reason: RUNNING
2024-07-11 10:25:42,203 Sleeping for 6s. Reason: RUNNING
2024-07-11 10:25:51,390 Setting max_seq=508, max_extra_seq=2048
2024-07-11 10:28:50,898 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.8 pTM=0.653 ipTM=0.152
2024-07-11 10:29:04,630 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.9 pTM=0.661 ipTM=0.159 tol=4.89
2024-07-11 10:29:18,380 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=78.6 pTM=0.655 ipTM=0.162 tol=3.27
2024-07-11 10:29:32,173 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.1 pTM=0.66 ipTM=0.179 tol=2.58
2024-07-11 10:29:45,966 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=80.8 pTM=0.676 ipTM=0.252 tol=2.95
2024-07-11 10:29:59,779 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=80.2 pTM=0.667 ipTM=0.22 tol=0.715
2024-07-11 10:30:13,633 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=80 pTM=0.667 ipTM=0.218 tol=0.584
2024-07-11 10:30:27,497 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=80 pTM=0.67 ipTM=0.228 tol=0.604
2024-07-11 10:30:41,350 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.5 pTM=0.675 ipTM=0.251 tol=0.358
2024-07-11 10:30:41,351 alphafold2_multimer_v3_model_1_seed_000 took 284.4s (8 recycles)
2024-07-11 10:30:55,705 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=80 pTM=0.665 ipTM=0.213
2024-07-11 10:31:09,678 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=81.4 pTM=0.701 ipTM=0.352 tol=6.77
2024-07-11 10:31:23,613 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=82.3 pTM=0.701 ipTM=0.34 tol=1.5
2024-07-11 10:31:37,544 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.6 pTM=0.694 ipTM=0.306 tol=0.323
2024-07-11 10:31:37,545 alphafold2_multimer_v3_model_2_seed_000 took 55.8s (3 recycles)
2024-07-11 10:31:51,949 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=81.2 pTM=0.645 ipTM=0.174
2024-07-11 10:32:05,914 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.8 pTM=0.665 ipTM=0.213 tol=8.16
2024-07-11 10:32:19,857 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=81.7 pTM=0.671 ipTM=0.251 tol=1.64
2024-07-11 10:32:33,810 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=81.7 pTM=0.684 ipTM=0.304 tol=1.11
2024-07-11 10:32:47,750 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=81.9 pTM=0.687 ipTM=0.312 tol=1.06
2024-07-11 10:33:01,704 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=81.8 pTM=0.696 ipTM=0.348 tol=0.844
2024-07-11 10:33:15,659 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=81.7 pTM=0.688 ipTM=0.317 tol=0.749
2024-07-11 10:33:29,625 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=81.8 pTM=0.692 ipTM=0.334 tol=0.726
2024-07-11 10:33:43,578 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=81.7 pTM=0.689 ipTM=0.329 tol=0.943
2024-07-11 10:33:57,523 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.5 pTM=0.686 ipTM=0.317 tol=0.539
2024-07-11 10:34:11,473 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=81.7 pTM=0.689 ipTM=0.335 tol=0.717
2024-07-11 10:34:25,429 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.8 pTM=0.69 ipTM=0.333 tol=1.25
2024-07-11 10:34:39,390 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=81.9 pTM=0.697 ipTM=0.365 tol=0.896
2024-07-11 10:34:53,351 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=81.6 pTM=0.689 ipTM=0.331 tol=0.689
2024-07-11 10:35:07,297 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=82 pTM=0.7 ipTM=0.377 tol=1.03
2024-07-11 10:35:21,259 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=81.8 pTM=0.691 ipTM=0.334 tol=0.61
2024-07-11 10:35:35,222 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=82.2 pTM=0.703 ipTM=0.388 tol=0.419
2024-07-11 10:35:35,223 alphafold2_multimer_v3_model_3_seed_000 took 237.2s (16 recycles)
2024-07-11 10:35:49,671 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=80.4 pTM=0.65 ipTM=0.164
2024-07-11 10:36:03,761 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.2 pTM=0.667 ipTM=0.188 tol=3.76
2024-07-11 10:36:17,817 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.1 pTM=0.667 ipTM=0.195 tol=5.95
2024-07-11 10:36:31,871 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.6 pTM=0.667 ipTM=0.201 tol=3.34
2024-07-11 10:36:45,922 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80 pTM=0.665 ipTM=0.186 tol=4.02
2024-07-11 10:36:59,996 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.4 pTM=0.669 ipTM=0.198 tol=1.84
2024-07-11 10:37:14,056 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.1 pTM=0.667 ipTM=0.194 tol=1.94
2024-07-11 10:37:28,104 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.8 pTM=0.667 ipTM=0.199 tol=1.26
2024-07-11 10:37:42,156 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.1 pTM=0.669 ipTM=0.205 tol=1.78
2024-07-11 10:37:56,211 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.6 pTM=0.668 ipTM=0.202 tol=1.7
2024-07-11 10:38:10,244 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.1 pTM=0.668 ipTM=0.208 tol=1.28
2024-07-11 10:38:24,306 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.8 pTM=0.667 ipTM=0.198 tol=1.67
2024-07-11 10:38:38,343 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80 pTM=0.668 ipTM=0.203 tol=1.67
2024-07-11 10:38:52,392 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.8 pTM=0.668 ipTM=0.203 tol=1.96
2024-07-11 10:39:06,426 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80 pTM=0.669 ipTM=0.209 tol=1.98
2024-07-11 10:39:20,468 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.8 pTM=0.668 ipTM=0.206 tol=1.26
2024-07-11 10:39:34,501 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.9 pTM=0.668 ipTM=0.208 tol=1.54
2024-07-11 10:39:48,559 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.8 pTM=0.67 ipTM=0.211 tol=1.5
2024-07-11 10:40:02,610 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=80.1 pTM=0.668 ipTM=0.208 tol=1.32
2024-07-11 10:40:16,669 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.8 pTM=0.668 ipTM=0.206 tol=1.54
2024-07-11 10:40:30,708 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80.1 pTM=0.67 ipTM=0.212 tol=1.81
2024-07-11 10:40:44,751 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=79.9 pTM=0.667 ipTM=0.208 tol=1.21
2024-07-11 10:40:58,787 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80 pTM=0.668 ipTM=0.209 tol=0.871
2024-07-11 10:41:12,838 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80 pTM=0.666 ipTM=0.196 tol=1.42
2024-07-11 10:41:26,860 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80 pTM=0.666 ipTM=0.204 tol=2.02
2024-07-11 10:41:40,899 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=79.8 pTM=0.664 ipTM=0.196 tol=1.68
2024-07-11 10:41:54,952 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.1 pTM=0.668 ipTM=0.202 tol=1.2
2024-07-11 10:42:09,010 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=79.9 pTM=0.665 ipTM=0.189 tol=1.46
2024-07-11 10:42:23,058 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80.1 pTM=0.667 ipTM=0.203 tol=1.81
2024-07-11 10:42:37,119 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=79.8 pTM=0.668 ipTM=0.203 tol=1.42
2024-07-11 10:42:51,161 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=80.1 pTM=0.667 ipTM=0.206 tol=1.9
2024-07-11 10:42:51,162 alphafold2_multimer_v3_model_4_seed_000 took 435.5s (30 recycles)
2024-07-11 10:43:05,549 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=80.6 pTM=0.65 ipTM=0.174
2024-07-11 10:43:19,560 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=80.2 pTM=0.663 ipTM=0.188 tol=3
2024-07-11 10:43:33,556 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=81.1 pTM=0.663 ipTM=0.194 tol=3
2024-07-11 10:43:47,525 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.7 pTM=0.673 ipTM=0.254 tol=1.76
2024-07-11 10:44:01,514 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=81.2 pTM=0.67 ipTM=0.235 tol=0.963
2024-07-11 10:44:15,499 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.8 pTM=0.68 ipTM=0.28 tol=0.771
2024-07-11 10:44:29,489 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.3 pTM=0.676 ipTM=0.269 tol=0.606
2024-07-11 10:44:43,472 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.9 pTM=0.681 ipTM=0.284 tol=0.783
2024-07-11 10:44:57,470 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=81.1 pTM=0.667 ipTM=0.227 tol=0.823
2024-07-11 10:45:11,460 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.6 pTM=0.678 ipTM=0.268 tol=0.628
2024-07-11 10:45:25,413 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=81.2 pTM=0.676 ipTM=0.279 tol=0.496
2024-07-11 10:45:25,413 alphafold2_multimer_v3_model_5_seed_000 took 153.8s (10 recycles)
2024-07-11 10:45:25,842 reranking models by 'multimer' metric
2024-07-11 10:45:27,079 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 10:46:17,653 Relaxation took 51.8s
2024-07-11 10:46:17,654 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=82.2 pTM=0.703 ipTM=0.388
2024-07-11 10:46:44,887 Relaxation took 27.2s
2024-07-11 10:46:44,888 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.6 pTM=0.694 ipTM=0.306
2024-07-11 10:47:24,498 Relaxation took 39.6s
2024-07-11 10:47:24,498 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=81.2 pTM=0.676 ipTM=0.279
2024-07-11 10:48:00,756 Relaxation took 36.3s
2024-07-11 10:48:00,756 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.5 pTM=0.675 ipTM=0.251
2024-07-11 10:49:30,971 Relaxation took 90.2s
2024-07-11 10:49:30,971 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.1 pTM=0.667 ipTM=0.206
2024-07-11 10:49:32,472 Done