2024-07-11 10:43:02,312 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 10:43:03,673 Running on GPU
2024-07-11 10:43:07,966 Found 6 citations for tools or databases
2024-07-11 10:43:07,966 Query 1/1: MOT5_SPB6 (length 863)
2024-07-11 10:43:08,445 Sleeping for 10s. Reason: PENDING
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2024-07-11 10:47:13,753 Sleeping for 8s. Reason: PENDING
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2024-07-11 10:49:34,148 Setting max_seq=508, max_extra_seq=2048
2024-07-11 10:53:49,235 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.4 pTM=0.456 ipTM=0.152
2024-07-11 10:54:08,197 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73.2 pTM=0.473 ipTM=0.154 tol=4.33
2024-07-11 10:54:27,178 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.2 pTM=0.473 ipTM=0.161 tol=1.7
2024-07-11 10:54:46,226 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.4 pTM=0.476 ipTM=0.165 tol=1.14
2024-07-11 10:55:05,285 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.9 pTM=0.479 ipTM=0.163 tol=0.472
2024-07-11 10:55:05,286 alphafold2_multimer_v3_model_1_seed_000 took 310.0s (4 recycles)
2024-07-11 10:55:25,062 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.6 pTM=0.467 ipTM=0.151
2024-07-11 10:55:44,173 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.7 pTM=0.466 ipTM=0.159 tol=3.97
2024-07-11 10:56:03,279 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.4 pTM=0.455 ipTM=0.158 tol=3.35
2024-07-11 10:56:22,420 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.7 pTM=0.455 ipTM=0.156 tol=3.53
2024-07-11 10:56:41,579 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=72.6 pTM=0.449 ipTM=0.152 tol=2.16
2024-07-11 10:57:00,744 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.1 pTM=0.448 ipTM=0.152 tol=1.99
2024-07-11 10:57:19,913 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.9 pTM=0.448 ipTM=0.152 tol=2.67
2024-07-11 10:57:39,092 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=72.7 pTM=0.454 ipTM=0.164 tol=13.4
2024-07-11 10:57:58,241 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=72.6 pTM=0.463 ipTM=0.17 tol=3.26
2024-07-11 10:58:17,385 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=72.3 pTM=0.471 ipTM=0.172 tol=2.4
2024-07-11 10:58:36,531 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=72.7 pTM=0.471 ipTM=0.172 tol=1.91
2024-07-11 10:58:55,687 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=72.8 pTM=0.476 ipTM=0.179 tol=0.714
2024-07-11 10:59:14,829 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=72.8 pTM=0.476 ipTM=0.178 tol=0.795
2024-07-11 10:59:33,973 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=72.8 pTM=0.475 ipTM=0.179 tol=2.59
2024-07-11 10:59:53,109 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=72.8 pTM=0.476 ipTM=0.182 tol=2.46
2024-07-11 11:00:12,249 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=72.8 pTM=0.476 ipTM=0.18 tol=0.531
2024-07-11 11:00:31,370 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=72.6 pTM=0.474 ipTM=0.181 tol=0.797
2024-07-11 11:00:50,509 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=72.8 pTM=0.479 ipTM=0.181 tol=2.13
2024-07-11 11:01:09,648 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=72.8 pTM=0.477 ipTM=0.181 tol=2.7
2024-07-11 11:01:28,781 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=72.8 pTM=0.478 ipTM=0.183 tol=0.655
2024-07-11 11:01:47,914 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=72.9 pTM=0.478 ipTM=0.18 tol=0.373
2024-07-11 11:01:47,915 alphafold2_multimer_v3_model_2_seed_000 took 402.0s (20 recycles)
2024-07-11 11:02:07,683 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.7 pTM=0.537 ipTM=0.278
2024-07-11 11:02:26,791 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74 pTM=0.524 ipTM=0.261 tol=4.13
2024-07-11 11:02:45,889 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.6 pTM=0.519 ipTM=0.253 tol=1.78
2024-07-11 11:03:05,006 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.7 pTM=0.516 ipTM=0.246 tol=1.39
2024-07-11 11:03:24,129 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.7 pTM=0.511 ipTM=0.23 tol=1.69
2024-07-11 11:03:43,251 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.8 pTM=0.509 ipTM=0.225 tol=1.55
2024-07-11 11:04:02,374 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73.8 pTM=0.508 ipTM=0.226 tol=1.01
2024-07-11 11:04:21,496 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73.8 pTM=0.507 ipTM=0.225 tol=1.23
2024-07-11 11:04:40,621 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.3 pTM=0.506 ipTM=0.226 tol=1.27
2024-07-11 11:04:59,743 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.3 pTM=0.505 ipTM=0.219 tol=0.644
2024-07-11 11:05:18,868 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=73.5 pTM=0.506 ipTM=0.225 tol=0.73
2024-07-11 11:05:37,998 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=73.4 pTM=0.508 ipTM=0.223 tol=0.843
2024-07-11 11:05:57,127 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.6 pTM=0.506 ipTM=0.219 tol=0.624
2024-07-11 11:06:16,252 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=73.4 pTM=0.504 ipTM=0.219 tol=0.643
2024-07-11 11:06:35,382 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=73.3 pTM=0.503 ipTM=0.215 tol=0.536
2024-07-11 11:06:54,515 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.2 pTM=0.504 ipTM=0.212 tol=1.52
2024-07-11 11:07:13,643 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.3 pTM=0.503 ipTM=0.215 tol=0.822
2024-07-11 11:07:32,777 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.3 pTM=0.506 ipTM=0.222 tol=0.897
2024-07-11 11:07:51,911 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.2 pTM=0.507 ipTM=0.22 tol=0.669
2024-07-11 11:08:11,041 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=73.3 pTM=0.507 ipTM=0.221 tol=0.604
2024-07-11 11:08:30,164 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=73.4 pTM=0.508 ipTM=0.221 tol=0.903
2024-07-11 11:08:49,287 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=73.1 pTM=0.506 ipTM=0.223 tol=0.452
2024-07-11 11:08:49,288 alphafold2_multimer_v3_model_3_seed_000 took 420.7s (21 recycles)
2024-07-11 11:09:09,074 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.5 pTM=0.5 ipTM=0.181
2024-07-11 11:09:28,188 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.9 pTM=0.536 ipTM=0.278 tol=4.42
2024-07-11 11:09:47,324 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.2 pTM=0.504 ipTM=0.206 tol=4.43
2024-07-11 11:10:06,443 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.8 pTM=0.515 ipTM=0.22 tol=3.07
2024-07-11 11:10:25,556 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.5 pTM=0.532 ipTM=0.252 tol=0.87
2024-07-11 11:10:44,682 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.2 pTM=0.532 ipTM=0.254 tol=0.529
2024-07-11 11:11:03,796 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.4 pTM=0.536 ipTM=0.262 tol=0.532
2024-07-11 11:11:22,921 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.1 pTM=0.527 ipTM=0.237 tol=0.983
2024-07-11 11:11:42,040 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.1 pTM=0.516 ipTM=0.216 tol=0.771
2024-07-11 11:12:01,168 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=74.9 pTM=0.518 ipTM=0.222 tol=0.83
2024-07-11 11:12:20,298 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.1 pTM=0.513 ipTM=0.211 tol=0.826
2024-07-11 11:12:39,423 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.2 pTM=0.512 ipTM=0.205 tol=0.515
2024-07-11 11:12:58,548 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.3 pTM=0.51 ipTM=0.203 tol=0.403
2024-07-11 11:12:58,549 alphafold2_multimer_v3_model_4_seed_000 took 248.6s (12 recycles)
2024-07-11 11:13:18,322 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.2 pTM=0.511 ipTM=0.225
2024-07-11 11:13:37,432 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=73.2 pTM=0.502 ipTM=0.198 tol=4.57
2024-07-11 11:13:56,545 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=73.4 pTM=0.494 ipTM=0.192 tol=2.83
2024-07-11 11:14:15,657 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=73.2 pTM=0.498 ipTM=0.186 tol=2.79
2024-07-11 11:14:34,773 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=74.1 pTM=0.499 ipTM=0.193 tol=3.38
2024-07-11 11:14:53,892 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=73.9 pTM=0.499 ipTM=0.186 tol=2.41
2024-07-11 11:15:12,999 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=73.6 pTM=0.499 ipTM=0.197 tol=0.903
2024-07-11 11:15:32,125 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=73.7 pTM=0.497 ipTM=0.189 tol=0.942
2024-07-11 11:15:51,246 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=73.3 pTM=0.498 ipTM=0.194 tol=0.625
2024-07-11 11:16:10,364 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=73.3 pTM=0.497 ipTM=0.189 tol=1.13
2024-07-11 11:16:29,481 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=73.3 pTM=0.499 ipTM=0.194 tol=0.941
2024-07-11 11:16:48,591 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=73.1 pTM=0.5 ipTM=0.196 tol=1.17
2024-07-11 11:17:07,706 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=73.5 pTM=0.501 ipTM=0.196 tol=1.23
2024-07-11 11:17:26,813 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=73.4 pTM=0.5 ipTM=0.191 tol=0.927
2024-07-11 11:17:45,929 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=73.4 pTM=0.495 ipTM=0.187 tol=2.06
2024-07-11 11:18:05,050 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=73.2 pTM=0.494 ipTM=0.181 tol=1.9
2024-07-11 11:18:24,165 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=73.4 pTM=0.497 ipTM=0.186 tol=2.02
2024-07-11 11:18:43,286 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=73.1 pTM=0.497 ipTM=0.188 tol=2.56
2024-07-11 11:19:02,418 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=73.2 pTM=0.498 ipTM=0.186 tol=1.07
2024-07-11 11:19:21,532 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=73.4 pTM=0.5 ipTM=0.191 tol=1.33
2024-07-11 11:19:40,647 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=73.1 pTM=0.494 ipTM=0.185 tol=0.679
2024-07-11 11:19:59,774 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=73 pTM=0.495 ipTM=0.183 tol=1.15
2024-07-11 11:20:18,879 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=72.9 pTM=0.496 ipTM=0.189 tol=0.908
2024-07-11 11:20:37,991 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=72.8 pTM=0.494 ipTM=0.18 tol=0.647
2024-07-11 11:20:57,106 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=73.2 pTM=0.495 ipTM=0.183 tol=2.12
2024-07-11 11:21:16,234 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=73.3 pTM=0.493 ipTM=0.178 tol=2.28
2024-07-11 11:21:35,346 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=73.4 pTM=0.495 ipTM=0.186 tol=0.904
2024-07-11 11:21:54,463 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=73.2 pTM=0.495 ipTM=0.186 tol=1.57
2024-07-11 11:22:13,581 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=72.9 pTM=0.497 ipTM=0.192 tol=1.67
2024-07-11 11:22:32,702 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=72.8 pTM=0.492 ipTM=0.183 tol=0.896
2024-07-11 11:22:51,816 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=72.9 pTM=0.495 ipTM=0.19 tol=0.767
2024-07-11 11:22:51,816 alphafold2_multimer_v3_model_5_seed_000 took 592.6s (30 recycles)
2024-07-11 11:22:52,486 reranking models by 'multimer' metric
2024-07-11 11:22:56,382 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 11:24:19,760 Relaxation took 87.3s
2024-07-11 11:24:19,760 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.1 pTM=0.506 ipTM=0.223
2024-07-11 11:26:08,756 Relaxation took 109.0s
2024-07-11 11:26:08,756 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.3 pTM=0.51 ipTM=0.203
2024-07-11 11:27:44,390 Relaxation took 95.6s
2024-07-11 11:27:44,391 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.9 pTM=0.495 ipTM=0.19
2024-07-11 11:29:52,740 Relaxation took 128.3s
2024-07-11 11:29:52,740 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=72.9 pTM=0.478 ipTM=0.18
2024-07-11 11:30:52,946 Relaxation took 60.2s
2024-07-11 11:30:52,946 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=73.9 pTM=0.479 ipTM=0.163
2024-07-11 11:30:55,006 Done