2024-07-11 11:02:12,550 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 11:02:12,865 Running on GPU
2024-07-11 11:02:16,614 Found 6 citations for tools or databases
2024-07-11 11:02:16,615 Query 1/1: MRP6_HOP2 (length 1720)
2024-07-11 11:02:17,062 Sleeping for 5s. Reason: PENDING
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2024-07-11 11:09:44,678 Sleeping for 10s. Reason: RUNNING
2024-07-11 11:09:57,560 Sleeping for 5s. Reason: PENDING
2024-07-11 11:10:02,955 Sleeping for 9s. Reason: RUNNING
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2024-07-11 11:18:43,892 Sleeping for 9s. Reason: RUNNING
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2024-07-11 11:19:09,094 Sleeping for 7s. Reason: RUNNING
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2024-07-11 11:19:42,031 Setting max_seq=508, max_extra_seq=2048
2024-07-11 11:23:15,249 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.4 pTM=0.733 ipTM=0.206
2024-07-11 11:24:50,594 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.2 pTM=0.728 ipTM=0.223 tol=3.15
2024-07-11 11:26:25,978 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.3 pTM=0.728 ipTM=0.231 tol=2.67
2024-07-11 11:28:01,404 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.4 pTM=0.731 ipTM=0.236 tol=1.47
2024-07-11 11:29:36,869 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.3 pTM=0.731 ipTM=0.244 tol=2.09
2024-07-11 11:31:12,337 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.6 pTM=0.734 ipTM=0.25 tol=1.88
2024-07-11 11:32:47,666 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=77.6 pTM=0.738 ipTM=0.276 tol=1.24
2024-07-11 11:34:23,032 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.6 pTM=0.738 ipTM=0.281 tol=1.06
2024-07-11 11:35:58,501 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=77.5 pTM=0.738 ipTM=0.291 tol=1.31
2024-07-11 11:37:33,943 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=77.6 pTM=0.74 ipTM=0.296 tol=0.856
2024-07-11 11:39:09,324 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=77.8 pTM=0.74 ipTM=0.295 tol=0.737
2024-07-11 11:40:44,710 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=77.8 pTM=0.742 ipTM=0.315 tol=0.69
2024-07-11 11:42:20,094 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=77.6 pTM=0.74 ipTM=0.312 tol=1.14
2024-07-11 11:43:55,555 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=77.8 pTM=0.742 ipTM=0.312 tol=2.36
2024-07-11 11:45:31,008 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=77.8 pTM=0.741 ipTM=0.311 tol=0.757
2024-07-11 11:47:06,499 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=77.6 pTM=0.742 ipTM=0.298 tol=1.09
2024-07-11 11:48:41,932 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=77.6 pTM=0.741 ipTM=0.304 tol=1.12
2024-07-11 11:50:17,327 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=77.8 pTM=0.743 ipTM=0.305 tol=0.629
2024-07-11 11:51:52,667 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=77.8 pTM=0.742 ipTM=0.306 tol=0.468
2024-07-11 11:51:52,669 alphafold2_multimer_v3_model_1_seed_000 took 1925.7s (18 recycles)
2024-07-11 11:53:29,800 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.2 pTM=0.724 ipTM=0.195
2024-07-11 11:55:05,227 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.2 pTM=0.716 ipTM=0.203 tol=5.12
2024-07-11 11:56:40,585 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=76.4 pTM=0.717 ipTM=0.213 tol=2.48
2024-07-11 11:58:16,033 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=76.8 pTM=0.717 ipTM=0.213 tol=1.49
2024-07-11 11:59:51,522 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.9 pTM=0.715 ipTM=0.208 tol=1.74
2024-07-11 12:01:26,900 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77 pTM=0.716 ipTM=0.207 tol=0.581
2024-07-11 12:03:02,258 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.8 pTM=0.72 ipTM=0.207 tol=2.38
2024-07-11 12:04:37,670 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=76.9 pTM=0.719 ipTM=0.205 tol=1
2024-07-11 12:06:13,086 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=77 pTM=0.719 ipTM=0.212 tol=1.08
2024-07-11 12:07:48,533 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=76.8 pTM=0.718 ipTM=0.206 tol=1.13
2024-07-11 12:09:23,984 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=77.1 pTM=0.72 ipTM=0.211 tol=1.17
2024-07-11 12:10:59,455 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=76.9 pTM=0.72 ipTM=0.209 tol=1.07
2024-07-11 12:12:34,874 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=76.8 pTM=0.719 ipTM=0.212 tol=0.821
2024-07-11 12:14:10,308 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=76.9 pTM=0.718 ipTM=0.206 tol=1.42
2024-07-11 12:15:45,816 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=77.1 pTM=0.718 ipTM=0.201 tol=1.36
2024-07-11 12:17:21,255 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=77 pTM=0.719 ipTM=0.201 tol=1.21
2024-07-11 12:18:56,705 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=77 pTM=0.719 ipTM=0.203 tol=1.63
2024-07-11 12:20:32,183 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=76.8 pTM=0.716 ipTM=0.2 tol=1.08
2024-07-11 12:22:07,641 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=76.8 pTM=0.717 ipTM=0.199 tol=1.25
2024-07-11 12:23:43,148 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=76.8 pTM=0.717 ipTM=0.2 tol=1.34
2024-07-11 12:25:18,625 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=76.7 pTM=0.717 ipTM=0.205 tol=2.72
2024-07-11 12:26:54,047 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=76.9 pTM=0.716 ipTM=0.213 tol=2.57
2024-07-11 12:28:29,502 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=77 pTM=0.719 ipTM=0.216 tol=2.03
2024-07-11 12:30:04,934 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=77 pTM=0.719 ipTM=0.216 tol=1.45
2024-07-11 12:31:40,404 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=76.9 pTM=0.716 ipTM=0.218 tol=1.31
2024-07-11 12:33:15,856 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=76.6 pTM=0.719 ipTM=0.217 tol=1.37
2024-07-11 12:34:51,242 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=76.7 pTM=0.722 ipTM=0.218 tol=2.59
2024-07-11 12:36:26,687 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=76.8 pTM=0.72 ipTM=0.214 tol=1.78
2024-07-11 12:38:02,146 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=76.9 pTM=0.717 ipTM=0.211 tol=1.13
2024-07-11 12:39:37,640 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=76.9 pTM=0.718 ipTM=0.203 tol=1.17
2024-07-11 12:41:13,114 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=76.8 pTM=0.718 ipTM=0.203 tol=0.702
2024-07-11 12:41:13,116 alphafold2_multimer_v3_model_2_seed_000 took 2958.7s (30 recycles)
2024-07-11 12:42:50,223 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.6 pTM=0.719 ipTM=0.195
2024-07-11 12:44:25,560 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.5 pTM=0.718 ipTM=0.217 tol=5.27
2024-07-11 12:46:00,928 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.7 pTM=0.714 ipTM=0.257 tol=4.53
2024-07-11 12:47:36,329 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.6 pTM=0.713 ipTM=0.263 tol=1.1
2024-07-11 12:49:11,706 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.7 pTM=0.712 ipTM=0.276 tol=0.685
2024-07-11 12:50:47,082 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.9 pTM=0.713 ipTM=0.281 tol=0.427
2024-07-11 12:50:47,084 alphafold2_multimer_v3_model_3_seed_000 took 572.2s (5 recycles)
2024-07-11 12:52:24,192 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.2 pTM=0.712 ipTM=0.202
2024-07-11 12:53:59,528 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.4 pTM=0.719 ipTM=0.212 tol=4.1
2024-07-11 12:55:34,839 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.3 pTM=0.718 ipTM=0.22 tol=1.69
2024-07-11 12:57:10,192 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.3 pTM=0.716 ipTM=0.218 tol=1.2
2024-07-11 12:58:45,609 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.5 pTM=0.717 ipTM=0.218 tol=0.961
2024-07-11 13:00:21,024 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.6 pTM=0.716 ipTM=0.219 tol=0.953
2024-07-11 13:01:56,425 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.8 pTM=0.72 ipTM=0.222 tol=0.592
2024-07-11 13:03:31,730 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.7 pTM=0.72 ipTM=0.224 tol=0.608
2024-07-11 13:05:07,143 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.9 pTM=0.722 ipTM=0.222 tol=0.604
2024-07-11 13:06:42,557 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.9 pTM=0.721 ipTM=0.224 tol=0.59
2024-07-11 13:08:17,916 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=76 pTM=0.721 ipTM=0.223 tol=0.428
2024-07-11 13:08:17,918 alphafold2_multimer_v3_model_4_seed_000 took 1049.1s (10 recycles)
2024-07-11 13:09:55,402 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.2 pTM=0.706 ipTM=0.192
2024-07-11 13:11:30,819 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=75.8 pTM=0.71 ipTM=0.191 tol=2.3
2024-07-11 13:13:06,253 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.1 pTM=0.709 ipTM=0.193 tol=2.68
2024-07-11 13:14:41,670 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.4 pTM=0.711 ipTM=0.196 tol=2.77
2024-07-11 13:16:17,044 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.6 pTM=0.714 ipTM=0.207 tol=2.76
2024-07-11 13:17:52,461 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76.7 pTM=0.714 ipTM=0.219 tol=1.63
2024-07-11 13:19:27,884 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.7 pTM=0.716 ipTM=0.219 tol=0.954
2024-07-11 13:21:03,318 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.6 pTM=0.716 ipTM=0.217 tol=1.35
2024-07-11 13:22:38,709 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.7 pTM=0.717 ipTM=0.217 tol=0.524
2024-07-11 13:24:14,065 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.6 pTM=0.718 ipTM=0.219 tol=0.656
2024-07-11 13:25:49,513 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76.7 pTM=0.717 ipTM=0.221 tol=0.545
2024-07-11 13:27:24,918 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=76.7 pTM=0.719 ipTM=0.224 tol=0.684
2024-07-11 13:29:00,318 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.7 pTM=0.718 ipTM=0.231 tol=0.541
2024-07-11 13:30:35,714 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=76.7 pTM=0.717 ipTM=0.227 tol=0.344
2024-07-11 13:30:35,715 alphafold2_multimer_v3_model_5_seed_000 took 1335.6s (13 recycles)
2024-07-11 13:30:37,438 reranking models by 'multimer' metric
2024-07-11 13:30:59,918 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 13:33:37,586 Relaxation took 180.1s
2024-07-11 13:33:37,586 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=77.8 pTM=0.742 ipTM=0.306
2024-07-11 13:37:23,752 Relaxation took 226.2s
2024-07-11 13:37:23,752 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76.9 pTM=0.713 ipTM=0.281
2024-07-11 13:40:45,551 Relaxation took 201.8s
2024-07-11 13:40:45,551 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.7 pTM=0.717 ipTM=0.227
2024-07-11 13:44:58,935 Relaxation took 253.4s
2024-07-11 13:44:58,935 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76 pTM=0.721 ipTM=0.223
2024-07-11 13:47:48,384 Relaxation took 169.4s
2024-07-11 13:47:48,384 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.8 pTM=0.718 ipTM=0.203
2024-07-11 13:47:59,740 Done