2024-07-11 14:49:39,652 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 14:49:39,996 Running on GPU
2024-07-11 14:49:58,336 Found 6 citations for tools or databases
2024-07-11 14:49:58,336 Query 1/1: NAA25_CMAP3 (length 1163)
2024-07-11 14:49:58,797 Sleeping for 9s. Reason: PENDING
2024-07-11 14:50:08,199 Sleeping for 9s. Reason: RUNNING
2024-07-11 14:50:17,609 Sleeping for 7s. Reason: RUNNING
2024-07-11 14:50:28,052 Sleeping for 8s. Reason: RUNNING
2024-07-11 14:50:36,475 Sleeping for 6s. Reason: RUNNING
2024-07-11 14:50:42,878 Sleeping for 10s. Reason: RUNNING
2024-07-11 14:50:53,288 Sleeping for 7s. Reason: RUNNING
2024-07-11 14:51:00,703 Sleeping for 9s. Reason: RUNNING
2024-07-11 14:51:10,130 Sleeping for 7s. Reason: RUNNING
2024-07-11 14:51:17,542 Sleeping for 5s. Reason: RUNNING
2024-07-11 14:51:22,954 Sleeping for 10s. Reason: RUNNING
2024-07-11 14:51:33,394 Sleeping for 10s. Reason: RUNNING
2024-07-11 14:51:45,236 Sleeping for 7s. Reason: PENDING
2024-07-11 14:51:52,640 Sleeping for 10s. Reason: RUNNING
2024-07-11 14:52:03,079 Sleeping for 5s. Reason: RUNNING
2024-07-11 14:52:08,498 Sleeping for 10s. Reason: RUNNING
2024-07-11 14:52:18,919 Sleeping for 8s. Reason: RUNNING
2024-07-11 14:52:27,319 Sleeping for 6s. Reason: RUNNING
2024-07-11 14:52:35,324 Setting max_seq=508, max_extra_seq=2048
2024-07-11 14:56:46,077 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.5 pTM=0.803 ipTM=0.366
2024-07-11 14:57:18,341 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=78.9 pTM=0.809 ipTM=0.33 tol=5.13
2024-07-11 14:57:50,752 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.5 pTM=0.814 ipTM=0.364 tol=2.03
2024-07-11 14:58:23,289 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.9 pTM=0.813 ipTM=0.354 tol=1.45
2024-07-11 14:58:55,806 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.7 pTM=0.814 ipTM=0.369 tol=1.33
2024-07-11 14:59:28,361 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.9 pTM=0.816 ipTM=0.378 tol=1.75
2024-07-11 15:00:00,916 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.9 pTM=0.819 ipTM=0.397 tol=0.921
2024-07-11 15:00:33,518 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.8 pTM=0.817 ipTM=0.382 tol=0.889
2024-07-11 15:01:06,148 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=80.1 pTM=0.823 ipTM=0.438 tol=0.881
2024-07-11 15:01:38,782 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=80.2 pTM=0.827 ipTM=0.479 tol=0.82
2024-07-11 15:02:11,398 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=80.9 pTM=0.833 ipTM=0.484 tol=0.86
2024-07-11 15:02:44,021 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=80.6 pTM=0.829 ipTM=0.468 tol=0.417
2024-07-11 15:02:44,022 alphafold2_multimer_v3_model_1_seed_000 took 548.5s (11 recycles)
2024-07-11 15:03:17,378 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78.3 pTM=0.798 ipTM=0.411
2024-07-11 15:03:49,943 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.4 pTM=0.799 ipTM=0.307 tol=2.85
2024-07-11 15:04:22,516 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.1 pTM=0.795 ipTM=0.287 tol=1.67
2024-07-11 15:04:55,120 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80.5 pTM=0.799 ipTM=0.297 tol=0.801
2024-07-11 15:05:27,672 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.2 pTM=0.797 ipTM=0.293 tol=0.45
2024-07-11 15:05:27,673 alphafold2_multimer_v3_model_2_seed_000 took 162.8s (4 recycles)
2024-07-11 15:06:01,039 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=79.1 pTM=0.781 ipTM=0.222
2024-07-11 15:06:33,675 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.4 pTM=0.804 ipTM=0.416 tol=5.79
2024-07-11 15:07:06,324 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.2 pTM=0.793 ipTM=0.264 tol=3.14
2024-07-11 15:07:38,958 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.5 pTM=0.805 ipTM=0.36 tol=3.21
2024-07-11 15:08:11,529 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.2 pTM=0.8 ipTM=0.301 tol=2.32
2024-07-11 15:08:44,089 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.4 pTM=0.802 ipTM=0.316 tol=1.16
2024-07-11 15:09:16,662 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=80.6 pTM=0.807 ipTM=0.337 tol=0.823
2024-07-11 15:09:49,221 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=80.6 pTM=0.806 ipTM=0.337 tol=0.718
2024-07-11 15:10:21,787 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=80.6 pTM=0.806 ipTM=0.332 tol=0.753
2024-07-11 15:10:54,343 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=81.2 pTM=0.816 ipTM=0.418 tol=1.12
2024-07-11 15:11:26,907 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=80.8 pTM=0.806 ipTM=0.34 tol=1.46
2024-07-11 15:11:59,484 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=81.1 pTM=0.815 ipTM=0.377 tol=1.29
2024-07-11 15:12:32,021 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=80.8 pTM=0.807 ipTM=0.345 tol=1.49
2024-07-11 15:13:04,535 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=80.8 pTM=0.809 ipTM=0.363 tol=1.17
2024-07-11 15:13:37,034 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=80.8 pTM=0.806 ipTM=0.34 tol=1.24
2024-07-11 15:14:09,563 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=81.6 pTM=0.819 ipTM=0.49 tol=1.07
2024-07-11 15:14:42,053 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=81.2 pTM=0.809 ipTM=0.386 tol=1.33
2024-07-11 15:15:14,549 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=81.5 pTM=0.816 ipTM=0.394 tol=0.698
2024-07-11 15:15:47,051 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=81.2 pTM=0.811 ipTM=0.39 tol=0.732
2024-07-11 15:16:19,587 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=81.4 pTM=0.814 ipTM=0.372 tol=0.742
2024-07-11 15:16:52,104 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=81 pTM=0.807 ipTM=0.355 tol=1.25
2024-07-11 15:17:24,649 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=81.4 pTM=0.815 ipTM=0.4 tol=0.941
2024-07-11 15:17:57,213 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=81.2 pTM=0.809 ipTM=0.36 tol=0.666
2024-07-11 15:18:29,779 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=81.2 pTM=0.814 ipTM=0.385 tol=0.86
2024-07-11 15:19:02,379 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=81.3 pTM=0.812 ipTM=0.384 tol=1.06
2024-07-11 15:19:34,972 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=81.2 pTM=0.812 ipTM=0.368 tol=0.498
2024-07-11 15:19:34,974 alphafold2_multimer_v3_model_3_seed_000 took 846.5s (25 recycles)
2024-07-11 15:20:08,430 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.6 pTM=0.792 ipTM=0.23
2024-07-11 15:20:41,059 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.9 pTM=0.812 ipTM=0.452 tol=6.09
2024-07-11 15:21:13,685 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=79.7 pTM=0.795 ipTM=0.262 tol=5.02
2024-07-11 15:21:46,302 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.8 pTM=0.796 ipTM=0.258 tol=2.12
2024-07-11 15:22:18,857 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.1 pTM=0.797 ipTM=0.318 tol=1.45
2024-07-11 15:22:51,441 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.1 pTM=0.798 ipTM=0.28 tol=1.47
2024-07-11 15:23:23,959 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.4 pTM=0.804 ipTM=0.312 tol=1.71
2024-07-11 15:23:56,487 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.5 pTM=0.799 ipTM=0.29 tol=1.93
2024-07-11 15:24:29,021 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.5 pTM=0.799 ipTM=0.301 tol=1.19
2024-07-11 15:25:01,591 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.6 pTM=0.798 ipTM=0.273 tol=1.36
2024-07-11 15:25:34,105 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.6 pTM=0.798 ipTM=0.288 tol=1.22
2024-07-11 15:26:06,635 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80.8 pTM=0.8 ipTM=0.284 tol=1.72
2024-07-11 15:26:39,153 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80.9 pTM=0.8 ipTM=0.295 tol=1.2
2024-07-11 15:27:11,663 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.4 pTM=0.798 ipTM=0.282 tol=2.7
2024-07-11 15:27:44,218 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80.3 pTM=0.8 ipTM=0.284 tol=1.36
2024-07-11 15:28:16,788 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80.6 pTM=0.8 ipTM=0.283 tol=2.03
2024-07-11 15:28:49,341 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.6 pTM=0.799 ipTM=0.291 tol=1.05
2024-07-11 15:29:21,878 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.6 pTM=0.797 ipTM=0.285 tol=1.35
2024-07-11 15:29:54,382 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=80.6 pTM=0.801 ipTM=0.309 tol=1.48
2024-07-11 15:30:26,935 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.7 pTM=0.799 ipTM=0.286 tol=0.847
2024-07-11 15:30:59,502 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80.7 pTM=0.798 ipTM=0.297 tol=0.756
2024-07-11 15:31:32,084 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80.6 pTM=0.797 ipTM=0.283 tol=0.746
2024-07-11 15:32:04,671 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.6 pTM=0.8 ipTM=0.289 tol=1.02
2024-07-11 15:32:37,276 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80.8 pTM=0.8 ipTM=0.3 tol=0.613
2024-07-11 15:33:09,887 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80.6 pTM=0.799 ipTM=0.286 tol=0.838
2024-07-11 15:33:42,517 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.4 pTM=0.8 ipTM=0.291 tol=2.52
2024-07-11 15:34:15,128 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.5 pTM=0.799 ipTM=0.291 tol=2.2
2024-07-11 15:34:47,731 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.4 pTM=0.796 ipTM=0.287 tol=1.36
2024-07-11 15:35:20,347 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80.4 pTM=0.799 ipTM=0.291 tol=0.798
2024-07-11 15:35:52,954 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.3 pTM=0.796 ipTM=0.286 tol=0.464
2024-07-11 15:35:52,955 alphafold2_multimer_v3_model_4_seed_000 took 977.2s (29 recycles)
2024-07-11 15:36:26,407 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.9 pTM=0.794 ipTM=0.416
2024-07-11 15:36:59,130 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=78.8 pTM=0.807 ipTM=0.316 tol=4.49
2024-07-11 15:37:31,815 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.6 pTM=0.802 ipTM=0.33 tol=1.76
2024-07-11 15:38:04,517 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=79.9 pTM=0.806 ipTM=0.315 tol=1.49
2024-07-11 15:38:37,187 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.1 pTM=0.801 ipTM=0.314 tol=1.78
2024-07-11 15:39:09,848 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.1 pTM=0.8 ipTM=0.297 tol=2.01
2024-07-11 15:39:42,523 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.2 pTM=0.803 ipTM=0.303 tol=1.98
2024-07-11 15:40:15,205 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.1 pTM=0.8 ipTM=0.308 tol=2.29
2024-07-11 15:40:47,879 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.2 pTM=0.799 ipTM=0.317 tol=1.38
2024-07-11 15:41:20,570 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.1 pTM=0.799 ipTM=0.293 tol=1.42
2024-07-11 15:41:53,231 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=80.1 pTM=0.799 ipTM=0.305 tol=0.653
2024-07-11 15:42:25,899 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=80.1 pTM=0.798 ipTM=0.292 tol=0.662
2024-07-11 15:42:58,566 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=80.1 pTM=0.798 ipTM=0.313 tol=0.771
2024-07-11 15:43:31,218 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=80.2 pTM=0.797 ipTM=0.274 tol=0.923
2024-07-11 15:44:03,882 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=80.2 pTM=0.801 ipTM=0.312 tol=0.671
2024-07-11 15:44:36,645 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=80.2 pTM=0.799 ipTM=0.28 tol=0.777
2024-07-11 15:45:09,319 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=80.2 pTM=0.798 ipTM=0.302 tol=0.914
2024-07-11 15:45:41,965 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=80.1 pTM=0.797 ipTM=0.276 tol=0.702
2024-07-11 15:46:14,625 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=80.2 pTM=0.804 ipTM=0.346 tol=0.967
2024-07-11 15:46:47,272 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=80.2 pTM=0.798 ipTM=0.28 tol=0.854
2024-07-11 15:47:19,883 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=80.2 pTM=0.798 ipTM=0.318 tol=0.995
2024-07-11 15:47:52,500 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=80.1 pTM=0.798 ipTM=0.28 tol=1.64
2024-07-11 15:48:25,141 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=80.3 pTM=0.799 ipTM=0.283 tol=1.25
2024-07-11 15:48:57,782 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=80.2 pTM=0.797 ipTM=0.266 tol=0.785
2024-07-11 15:49:30,463 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=80.1 pTM=0.799 ipTM=0.273 tol=0.79
2024-07-11 15:50:03,126 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=80.2 pTM=0.797 ipTM=0.276 tol=1.57
2024-07-11 15:50:35,765 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=80.2 pTM=0.8 ipTM=0.315 tol=1.05
2024-07-11 15:51:08,364 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=80.1 pTM=0.795 ipTM=0.274 tol=1.03
2024-07-11 15:51:41,007 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=80.1 pTM=0.797 ipTM=0.292 tol=0.814
2024-07-11 15:52:13,658 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=79.9 pTM=0.796 ipTM=0.277 tol=0.986
2024-07-11 15:52:46,295 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=80.2 pTM=0.798 ipTM=0.273 tol=1.14
2024-07-11 15:52:46,296 alphafold2_multimer_v3_model_5_seed_000 took 1012.5s (30 recycles)
2024-07-11 15:52:47,108 reranking models by 'multimer' metric
2024-07-11 15:53:03,752 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 15:55:08,727 Relaxation took 141.6s
2024-07-11 15:55:08,728 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=80.6 pTM=0.829 ipTM=0.468
2024-07-11 15:57:08,292 Relaxation took 119.6s
2024-07-11 15:57:08,292 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=81.2 pTM=0.812 ipTM=0.368
2024-07-11 15:59:18,411 Relaxation took 130.1s
2024-07-11 15:59:18,411 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=80.2 pTM=0.797 ipTM=0.293
2024-07-11 16:02:16,911 Relaxation took 178.5s
2024-07-11 16:02:16,912 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.3 pTM=0.796 ipTM=0.286
2024-07-11 16:04:42,901 Relaxation took 146.0s
2024-07-11 16:04:42,901 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.2 pTM=0.798 ipTM=0.273
2024-07-11 16:04:48,435 Done