2024-07-11 16:40:27,725 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 16:40:28,058 Running on GPU
2024-07-11 16:40:43,643 Found 6 citations for tools or databases
2024-07-11 16:40:43,643 Query 1/1: NHLC4_STAT1 (length 873)
2024-07-11 16:40:44,067 Sleeping for 6s. Reason: PENDING
2024-07-11 16:40:50,480 Sleeping for 5s. Reason: RUNNING
2024-07-11 16:40:55,886 Sleeping for 7s. Reason: RUNNING
2024-07-11 16:41:03,281 Sleeping for 6s. Reason: RUNNING
2024-07-11 16:41:09,680 Sleeping for 6s. Reason: RUNNING
2024-07-11 16:41:16,071 Sleeping for 10s. Reason: RUNNING
2024-07-11 16:41:26,502 Sleeping for 6s. Reason: RUNNING
2024-07-11 16:41:32,914 Sleeping for 9s. Reason: RUNNING
2024-07-11 16:41:42,325 Sleeping for 7s. Reason: RUNNING
2024-07-11 16:41:49,719 Sleeping for 5s. Reason: RUNNING
2024-07-11 16:41:55,120 Sleeping for 7s. Reason: RUNNING
2024-07-11 16:42:02,539 Sleeping for 7s. Reason: RUNNING
2024-07-11 16:42:11,539 Sleeping for 9s. Reason: PENDING
2024-07-11 16:42:20,945 Sleeping for 6s. Reason: RUNNING
2024-07-11 16:42:27,347 Sleeping for 9s. Reason: RUNNING
2024-07-11 16:42:36,778 Sleeping for 6s. Reason: RUNNING
2024-07-11 16:42:43,188 Sleeping for 6s. Reason: RUNNING
2024-07-11 16:42:49,602 Sleeping for 9s. Reason: RUNNING
2024-07-11 16:43:00,765 Setting max_seq=508, max_extra_seq=2048
2024-07-11 16:46:01,786 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.4 pTM=0.614 ipTM=0.322
2024-07-11 16:46:17,325 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.6 pTM=0.622 ipTM=0.196 tol=5.9
2024-07-11 16:46:32,909 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.4 pTM=0.617 ipTM=0.187 tol=2.58
2024-07-11 16:46:48,524 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.9 pTM=0.615 ipTM=0.194 tol=3.41
2024-07-11 16:47:04,172 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.9 pTM=0.62 ipTM=0.196 tol=1.91
2024-07-11 16:47:19,817 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.2 pTM=0.614 ipTM=0.201 tol=3.05
2024-07-11 16:47:35,474 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.6 pTM=0.616 ipTM=0.201 tol=0.858
2024-07-11 16:47:51,128 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=75.2 pTM=0.615 ipTM=0.205 tol=0.6
2024-07-11 16:48:06,796 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.7 pTM=0.616 ipTM=0.199 tol=2.32
2024-07-11 16:48:22,494 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=76.4 pTM=0.62 ipTM=0.194 tol=1.18
2024-07-11 16:48:38,190 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=76.2 pTM=0.62 ipTM=0.192 tol=0.724
2024-07-11 16:48:53,893 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=76.5 pTM=0.623 ipTM=0.197 tol=1.52
2024-07-11 16:49:09,603 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=76.2 pTM=0.619 ipTM=0.192 tol=1.46
2024-07-11 16:49:25,311 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=75.8 pTM=0.616 ipTM=0.193 tol=0.714
2024-07-11 16:49:41,018 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=75.9 pTM=0.616 ipTM=0.19 tol=0.87
2024-07-11 16:49:56,739 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=76.2 pTM=0.62 ipTM=0.199 tol=0.599
2024-07-11 16:50:12,461 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=76.6 pTM=0.625 ipTM=0.197 tol=0.633
2024-07-11 16:50:28,182 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=76.1 pTM=0.616 ipTM=0.19 tol=0.699
2024-07-11 16:50:43,909 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=76.6 pTM=0.623 ipTM=0.186 tol=0.52
2024-07-11 16:50:59,617 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=75.9 pTM=0.618 ipTM=0.19 tol=0.556
2024-07-11 16:51:15,325 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=75.6 pTM=0.615 ipTM=0.188 tol=0.599
2024-07-11 16:51:31,030 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=75.6 pTM=0.614 ipTM=0.19 tol=0.571
2024-07-11 16:51:46,738 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=75.1 pTM=0.608 ipTM=0.181 tol=1.17
2024-07-11 16:52:02,435 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=75.4 pTM=0.611 ipTM=0.189 tol=1.26
2024-07-11 16:52:18,131 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=75.6 pTM=0.615 ipTM=0.185 tol=0.78
2024-07-11 16:52:33,829 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=76.1 pTM=0.615 ipTM=0.183 tol=0.931
2024-07-11 16:52:49,523 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=76.1 pTM=0.618 ipTM=0.184 tol=0.454
2024-07-11 16:52:49,524 alphafold2_multimer_v3_model_1_seed_000 took 585.2s (26 recycles)
2024-07-11 16:53:05,738 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=76.6 pTM=0.621 ipTM=0.179
2024-07-11 16:53:21,487 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.8 pTM=0.635 ipTM=0.179 tol=6.57
2024-07-11 16:53:37,222 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.9 pTM=0.635 ipTM=0.172 tol=1.56
2024-07-11 16:53:52,950 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.2 pTM=0.629 ipTM=0.171 tol=3.27
2024-07-11 16:54:08,670 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.9 pTM=0.631 ipTM=0.162 tol=1.15
2024-07-11 16:54:24,382 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.8 pTM=0.63 ipTM=0.166 tol=0.96
2024-07-11 16:54:40,104 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=79.1 pTM=0.634 ipTM=0.166 tol=0.742
2024-07-11 16:54:55,821 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.5 pTM=0.629 ipTM=0.168 tol=0.351
2024-07-11 16:54:55,823 alphafold2_multimer_v3_model_2_seed_000 took 125.8s (7 recycles)
2024-07-11 16:55:12,044 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.3 pTM=0.623 ipTM=0.2
2024-07-11 16:55:27,798 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.6 pTM=0.646 ipTM=0.293 tol=6.27
2024-07-11 16:55:43,555 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77.9 pTM=0.638 ipTM=0.224 tol=2.22
2024-07-11 16:55:59,304 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=77.9 pTM=0.64 ipTM=0.236 tol=1.34
2024-07-11 16:56:15,085 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.2 pTM=0.645 ipTM=0.251 tol=1.09
2024-07-11 16:56:30,822 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.9 pTM=0.641 ipTM=0.237 tol=2.07
2024-07-11 16:56:46,561 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=78.2 pTM=0.644 ipTM=0.247 tol=1.89
2024-07-11 16:57:02,274 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=77.8 pTM=0.642 ipTM=0.249 tol=1.06
2024-07-11 16:57:18,010 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.2 pTM=0.645 ipTM=0.264 tol=1.95
2024-07-11 16:57:33,737 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=78.3 pTM=0.644 ipTM=0.245 tol=0.62
2024-07-11 16:57:49,469 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=76.2 pTM=0.643 ipTM=0.255 tol=3.03
2024-07-11 16:58:05,218 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=78.6 pTM=0.648 ipTM=0.268 tol=2.98
2024-07-11 16:58:20,964 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=78.3 pTM=0.646 ipTM=0.269 tol=0.579
2024-07-11 16:58:36,700 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.1 pTM=0.645 ipTM=0.261 tol=0.41
2024-07-11 16:58:36,701 alphafold2_multimer_v3_model_3_seed_000 took 220.4s (13 recycles)
2024-07-11 16:58:52,901 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.4 pTM=0.612 ipTM=0.156
2024-07-11 16:59:08,600 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.2 pTM=0.635 ipTM=0.26 tol=5.27
2024-07-11 16:59:24,306 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=76.9 pTM=0.624 ipTM=0.2 tol=2.19
2024-07-11 16:59:40,008 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76.8 pTM=0.625 ipTM=0.204 tol=1.32
2024-07-11 16:59:55,759 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.8 pTM=0.634 ipTM=0.208 tol=1.07
2024-07-11 17:00:11,465 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.1 pTM=0.628 ipTM=0.204 tol=0.812
2024-07-11 17:00:27,192 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.9 pTM=0.627 ipTM=0.199 tol=0.523
2024-07-11 17:00:42,907 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76.9 pTM=0.626 ipTM=0.204 tol=0.498
2024-07-11 17:00:42,908 alphafold2_multimer_v3_model_4_seed_000 took 125.7s (7 recycles)
2024-07-11 17:00:59,184 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=77.4 pTM=0.628 ipTM=0.186
2024-07-11 17:01:14,914 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.1 pTM=0.641 ipTM=0.214 tol=6.31
2024-07-11 17:01:30,648 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.4 pTM=0.639 ipTM=0.185 tol=3.76
2024-07-11 17:01:46,417 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.8 pTM=0.644 ipTM=0.191 tol=1.59
2024-07-11 17:02:02,226 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.5 pTM=0.645 ipTM=0.178 tol=2.1
2024-07-11 17:02:18,001 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.7 pTM=0.641 ipTM=0.184 tol=1.83
2024-07-11 17:02:33,784 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.9 pTM=0.642 ipTM=0.181 tol=1.18
2024-07-11 17:02:49,538 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=77.2 pTM=0.64 ipTM=0.187 tol=2.52
2024-07-11 17:03:05,291 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.3 pTM=0.634 ipTM=0.18 tol=2.36
2024-07-11 17:03:21,054 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.6 pTM=0.639 ipTM=0.184 tol=1.25
2024-07-11 17:03:36,791 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=77.2 pTM=0.634 ipTM=0.182 tol=1.9
2024-07-11 17:03:52,562 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.2 pTM=0.641 ipTM=0.188 tol=0.665
2024-07-11 17:04:08,303 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=77.2 pTM=0.637 ipTM=0.189 tol=0.611
2024-07-11 17:04:24,071 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.1 pTM=0.644 ipTM=0.192 tol=0.653
2024-07-11 17:04:39,836 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.8 pTM=0.639 ipTM=0.194 tol=0.883
2024-07-11 17:04:55,581 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=77.4 pTM=0.635 ipTM=0.199 tol=1.2
2024-07-11 17:05:11,314 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=76.9 pTM=0.631 ipTM=0.192 tol=0.833
2024-07-11 17:05:27,065 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=77.3 pTM=0.634 ipTM=0.191 tol=1.12
2024-07-11 17:05:42,806 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=76.8 pTM=0.632 ipTM=0.188 tol=1.76
2024-07-11 17:05:58,587 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=77.7 pTM=0.639 ipTM=0.198 tol=1.73
2024-07-11 17:06:14,338 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=77.2 pTM=0.635 ipTM=0.193 tol=1.76
2024-07-11 17:06:30,108 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=77.6 pTM=0.639 ipTM=0.197 tol=1.46
2024-07-11 17:06:45,876 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=77.6 pTM=0.635 ipTM=0.19 tol=0.977
2024-07-11 17:07:01,664 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=77.7 pTM=0.638 ipTM=0.192 tol=1.19
2024-07-11 17:07:17,429 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=77.4 pTM=0.637 ipTM=0.187 tol=2.13
2024-07-11 17:07:33,220 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=78 pTM=0.638 ipTM=0.179 tol=0.603
2024-07-11 17:07:49,013 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=77.9 pTM=0.638 ipTM=0.179 tol=0.636
2024-07-11 17:08:04,782 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=77.6 pTM=0.638 ipTM=0.185 tol=1.14
2024-07-11 17:08:20,547 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=77.5 pTM=0.634 ipTM=0.181 tol=1.12
2024-07-11 17:08:36,335 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=77.9 pTM=0.637 ipTM=0.184 tol=0.463
2024-07-11 17:08:36,336 alphafold2_multimer_v3_model_5_seed_000 took 472.9s (29 recycles)
2024-07-11 17:08:36,816 reranking models by 'multimer' metric
2024-07-11 17:09:01,466 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 17:09:46,951 Relaxation took 70.1s
2024-07-11 17:09:46,952 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.1 pTM=0.645 ipTM=0.261
2024-07-11 17:10:26,851 Relaxation took 39.9s
2024-07-11 17:10:26,851 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.9 pTM=0.626 ipTM=0.204
2024-07-11 17:18:55,755 Relaxation took 508.9s
2024-07-11 17:18:55,755 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.9 pTM=0.637 ipTM=0.184
2024-07-11 17:19:44,090 Relaxation took 48.3s
2024-07-11 17:19:44,090 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.1 pTM=0.618 ipTM=0.184
2024-07-11 17:21:02,130 Relaxation took 78.0s
2024-07-11 17:21:02,130 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.5 pTM=0.629 ipTM=0.168
2024-07-11 17:21:04,600 Done