2024-07-11 17:23:04,334 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 17:23:04,650 Running on GPU
2024-07-11 17:23:18,721 Found 6 citations for tools or databases
2024-07-11 17:23:18,721 Query 1/1: NKD1_KR103 (length 691)
2024-07-11 17:23:19,244 Sleeping for 10s. Reason: PENDING
2024-07-11 17:23:29,655 Sleeping for 5s. Reason: RUNNING
2024-07-11 17:23:35,058 Sleeping for 8s. Reason: RUNNING
2024-07-11 17:23:43,469 Sleeping for 8s. Reason: RUNNING
2024-07-11 17:23:51,889 Sleeping for 7s. Reason: RUNNING
2024-07-11 17:24:00,621 Sleeping for 9s. Reason: PENDING
2024-07-11 17:24:10,044 Sleeping for 8s. Reason: RUNNING
2024-07-11 17:24:19,868 Setting max_seq=508, max_extra_seq=2048
2024-07-11 17:27:58,560 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=22.2 pTM=0.235 ipTM=0.186
2024-07-11 17:28:08,107 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=22.8 pTM=0.244 ipTM=0.226 tol=16.1
2024-07-11 17:28:17,661 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=22.9 pTM=0.235 ipTM=0.208 tol=14.7
2024-07-11 17:28:27,249 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=22.9 pTM=0.231 ipTM=0.205 tol=6.98
2024-07-11 17:28:36,837 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=23.2 pTM=0.237 ipTM=0.219 tol=4.67
2024-07-11 17:28:46,435 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=23.1 pTM=0.228 ipTM=0.214 tol=5.29
2024-07-11 17:28:56,048 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=23.2 pTM=0.234 ipTM=0.218 tol=4.02
2024-07-11 17:29:05,665 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=23 pTM=0.232 ipTM=0.212 tol=2.93
2024-07-11 17:29:15,292 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=22.9 pTM=0.229 ipTM=0.211 tol=4.03
2024-07-11 17:29:24,917 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=23.2 pTM=0.236 ipTM=0.218 tol=7.09
2024-07-11 17:29:34,558 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=23.5 pTM=0.244 ipTM=0.227 tol=4.14
2024-07-11 17:29:44,204 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=23.9 pTM=0.248 ipTM=0.243 tol=3.99
2024-07-11 17:29:53,859 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=24 pTM=0.248 ipTM=0.273 tol=3.44
2024-07-11 17:30:03,540 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=24.1 pTM=0.247 ipTM=0.274 tol=7.39
2024-07-11 17:30:13,200 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=24 pTM=0.246 ipTM=0.281 tol=3.41
2024-07-11 17:30:22,865 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=23.9 pTM=0.246 ipTM=0.282 tol=2.87
2024-07-11 17:30:32,521 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=23.6 pTM=0.241 ipTM=0.282 tol=6.92
2024-07-11 17:30:42,198 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=23.9 pTM=0.239 ipTM=0.28 tol=4.23
2024-07-11 17:30:51,866 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=24 pTM=0.247 ipTM=0.286 tol=7.29
2024-07-11 17:31:01,537 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=24.2 pTM=0.248 ipTM=0.282 tol=6.8
2024-07-11 17:31:11,214 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=24.1 pTM=0.245 ipTM=0.285 tol=6.24
2024-07-11 17:31:20,869 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=23.8 pTM=0.242 ipTM=0.283 tol=3.23
2024-07-11 17:31:30,533 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=23.9 pTM=0.246 ipTM=0.288 tol=2.22
2024-07-11 17:31:40,219 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=24 pTM=0.242 ipTM=0.278 tol=2.44
2024-07-11 17:31:49,901 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=23.8 pTM=0.243 ipTM=0.283 tol=4.55
2024-07-11 17:31:59,573 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=23.8 pTM=0.239 ipTM=0.28 tol=3.86
2024-07-11 17:32:09,252 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=23.8 pTM=0.241 ipTM=0.283 tol=6.2
2024-07-11 17:32:18,911 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=23.9 pTM=0.242 ipTM=0.279 tol=6.65
2024-07-11 17:32:28,596 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=24 pTM=0.252 ipTM=0.292 tol=2.07
2024-07-11 17:32:38,280 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=24.2 pTM=0.248 ipTM=0.287 tol=8.93
2024-07-11 17:32:47,966 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=24.1 pTM=0.246 ipTM=0.286 tol=3.09
2024-07-11 17:32:47,967 alphafold2_multimer_v3_model_1_seed_000 took 454.1s (30 recycles)
2024-07-11 17:32:57,929 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=20.9 pTM=0.225 ipTM=0.178
2024-07-11 17:33:07,585 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=21.4 pTM=0.229 ipTM=0.197 tol=11.9
2024-07-11 17:33:17,275 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=23 pTM=0.256 ipTM=0.249 tol=11.7
2024-07-11 17:33:26,969 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=22.8 pTM=0.25 ipTM=0.251 tol=6.99
2024-07-11 17:33:36,667 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=22.5 pTM=0.239 ipTM=0.23 tol=3.78
2024-07-11 17:33:46,343 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=22.8 pTM=0.242 ipTM=0.231 tol=3.21
2024-07-11 17:33:56,040 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=23.1 pTM=0.245 ipTM=0.234 tol=2.55
2024-07-11 17:34:05,738 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=23.2 pTM=0.248 ipTM=0.244 tol=2.62
2024-07-11 17:34:15,435 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=23.1 pTM=0.248 ipTM=0.246 tol=2.18
2024-07-11 17:34:25,134 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=23.1 pTM=0.245 ipTM=0.251 tol=4.11
2024-07-11 17:34:34,844 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=23.6 pTM=0.257 ipTM=0.26 tol=3.5
2024-07-11 17:34:44,525 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=23.3 pTM=0.252 ipTM=0.253 tol=3.96
2024-07-11 17:34:54,239 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=23.2 pTM=0.252 ipTM=0.259 tol=2.92
2024-07-11 17:35:03,953 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=23.2 pTM=0.252 ipTM=0.255 tol=3.21
2024-07-11 17:35:13,660 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=23 pTM=0.249 ipTM=0.254 tol=3.2
2024-07-11 17:35:23,363 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=23.3 pTM=0.254 ipTM=0.263 tol=2.83
2024-07-11 17:35:33,064 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=22.9 pTM=0.247 ipTM=0.257 tol=2.8
2024-07-11 17:35:42,747 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=23.2 pTM=0.253 ipTM=0.263 tol=2.39
2024-07-11 17:35:52,455 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=23.2 pTM=0.25 ipTM=0.261 tol=2.64
2024-07-11 17:36:02,160 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=23.4 pTM=0.255 ipTM=0.269 tol=2.83
2024-07-11 17:36:11,854 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=23.1 pTM=0.249 ipTM=0.261 tol=2.57
2024-07-11 17:36:21,545 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=23.2 pTM=0.255 ipTM=0.266 tol=2.48
2024-07-11 17:36:31,246 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=23 pTM=0.247 ipTM=0.261 tol=2.8
2024-07-11 17:36:40,929 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=23 pTM=0.25 ipTM=0.263 tol=2.68
2024-07-11 17:36:50,643 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=23 pTM=0.246 ipTM=0.255 tol=2.29
2024-07-11 17:37:00,339 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=23 pTM=0.249 ipTM=0.259 tol=2.23
2024-07-11 17:37:10,056 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=23 pTM=0.244 ipTM=0.251 tol=2.43
2024-07-11 17:37:19,740 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=23.2 pTM=0.252 ipTM=0.258 tol=2.37
2024-07-11 17:37:29,424 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=22.9 pTM=0.245 ipTM=0.25 tol=2.41
2024-07-11 17:37:39,127 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=23.2 pTM=0.254 ipTM=0.262 tol=2.47
2024-07-11 17:37:48,819 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=23 pTM=0.247 ipTM=0.253 tol=2.56
2024-07-11 17:37:48,820 alphafold2_multimer_v3_model_2_seed_000 took 300.5s (30 recycles)
2024-07-11 17:37:58,860 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=23.1 pTM=0.245 ipTM=0.212
2024-07-11 17:38:08,607 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=23.2 pTM=0.244 ipTM=0.238 tol=13.5
2024-07-11 17:38:18,358 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=23.1 pTM=0.239 ipTM=0.228 tol=6.63
2024-07-11 17:38:28,110 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=22.8 pTM=0.238 ipTM=0.227 tol=15.1
2024-07-11 17:38:37,851 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=23.2 pTM=0.237 ipTM=0.205 tol=9.88
2024-07-11 17:38:47,601 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=23.3 pTM=0.243 ipTM=0.249 tol=17.1
2024-07-11 17:38:57,334 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=25.3 pTM=0.278 ipTM=0.302 tol=11.9
2024-07-11 17:39:07,073 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=26.1 pTM=0.293 ipTM=0.303 tol=9.76
2024-07-11 17:39:16,778 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=26.5 pTM=0.299 ipTM=0.323 tol=6.93
2024-07-11 17:39:26,504 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=27 pTM=0.305 ipTM=0.325 tol=7.61
2024-07-11 17:39:36,231 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=26.1 pTM=0.294 ipTM=0.315 tol=15.1
2024-07-11 17:39:45,960 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=25.4 pTM=0.281 ipTM=0.292 tol=14.4
2024-07-11 17:39:55,685 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=26.6 pTM=0.302 ipTM=0.314 tol=11.8
2024-07-11 17:40:05,383 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=26.9 pTM=0.301 ipTM=0.306 tol=4.59
2024-07-11 17:40:15,093 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=26.5 pTM=0.296 ipTM=0.305 tol=4.37
2024-07-11 17:40:24,792 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=26.5 pTM=0.304 ipTM=0.321 tol=11.2
2024-07-11 17:40:34,491 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=26.8 pTM=0.307 ipTM=0.331 tol=6.77
2024-07-11 17:40:44,215 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=26.5 pTM=0.298 ipTM=0.323 tol=5.55
2024-07-11 17:40:53,946 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=27.2 pTM=0.311 ipTM=0.333 tol=4.68
2024-07-11 17:41:03,677 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=26.6 pTM=0.302 ipTM=0.329 tol=6.94
2024-07-11 17:41:13,408 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=26.8 pTM=0.3 ipTM=0.328 tol=5.59
2024-07-11 17:41:23,140 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=27.1 pTM=0.307 ipTM=0.331 tol=3.44
2024-07-11 17:41:32,840 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=26.7 pTM=0.302 ipTM=0.328 tol=8.33
2024-07-11 17:41:42,588 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=26.6 pTM=0.3 ipTM=0.315 tol=9.52
2024-07-11 17:41:52,326 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=26.3 pTM=0.298 ipTM=0.314 tol=5.66
2024-07-11 17:42:02,065 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=26.8 pTM=0.302 ipTM=0.318 tol=3.99
2024-07-11 17:42:11,783 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=26.6 pTM=0.301 ipTM=0.317 tol=3.77
2024-07-11 17:42:21,514 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=27 pTM=0.308 ipTM=0.332 tol=5.89
2024-07-11 17:42:31,254 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=26.8 pTM=0.306 ipTM=0.329 tol=4.86
2024-07-11 17:42:40,981 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=27.4 pTM=0.315 ipTM=0.345 tol=7.1
2024-07-11 17:42:50,706 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=27.2 pTM=0.31 ipTM=0.334 tol=7.99
2024-07-11 17:42:50,706 alphafold2_multimer_v3_model_3_seed_000 took 301.6s (30 recycles)
2024-07-11 17:43:00,771 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=23.7 pTM=0.217 ipTM=0.179
2024-07-11 17:43:10,496 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=24.5 pTM=0.227 ipTM=0.213 tol=14.5
2024-07-11 17:43:20,230 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=24.3 pTM=0.223 ipTM=0.208 tol=8.11
2024-07-11 17:43:29,955 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=24.8 pTM=0.225 ipTM=0.221 tol=5.58
2024-07-11 17:43:39,691 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=24.7 pTM=0.223 ipTM=0.223 tol=5.6
2024-07-11 17:43:49,415 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=24.5 pTM=0.217 ipTM=0.208 tol=6.54
2024-07-11 17:43:59,151 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=24.6 pTM=0.222 ipTM=0.218 tol=8.19
2024-07-11 17:44:08,879 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=24.6 pTM=0.222 ipTM=0.21 tol=8.41
2024-07-11 17:44:18,601 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=24.6 pTM=0.227 ipTM=0.222 tol=7.71
2024-07-11 17:44:28,317 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=24.5 pTM=0.219 ipTM=0.205 tol=7.34
2024-07-11 17:44:38,039 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=24.8 pTM=0.229 ipTM=0.225 tol=10.9
2024-07-11 17:44:47,759 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=24.6 pTM=0.219 ipTM=0.216 tol=7.23
2024-07-11 17:44:57,470 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=24.4 pTM=0.228 ipTM=0.214 tol=7.18
2024-07-11 17:45:07,189 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=24.5 pTM=0.223 ipTM=0.213 tol=6.64
2024-07-11 17:45:16,908 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=24.9 pTM=0.225 ipTM=0.223 tol=5.59
2024-07-11 17:45:26,635 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=24.5 pTM=0.218 ipTM=0.205 tol=5.88
2024-07-11 17:45:36,359 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=25 pTM=0.225 ipTM=0.229 tol=9.91
2024-07-11 17:45:46,080 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=25.1 pTM=0.223 ipTM=0.229 tol=7.93
2024-07-11 17:45:55,796 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=25.3 pTM=0.225 ipTM=0.218 tol=4.16
2024-07-11 17:46:05,504 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=24.7 pTM=0.222 ipTM=0.208 tol=7.16
2024-07-11 17:46:15,219 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=25.6 pTM=0.236 ipTM=0.228 tol=8.58
2024-07-11 17:46:24,944 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=25.3 pTM=0.228 ipTM=0.222 tol=6.31
2024-07-11 17:46:34,663 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=25.5 pTM=0.225 ipTM=0.224 tol=4.38
2024-07-11 17:46:44,393 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=25.6 pTM=0.234 ipTM=0.229 tol=4.16
2024-07-11 17:46:54,116 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=25.6 pTM=0.231 ipTM=0.234 tol=4.09
2024-07-11 17:47:03,833 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=25.1 pTM=0.232 ipTM=0.232 tol=6.43
2024-07-11 17:47:13,558 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=25.5 pTM=0.23 ipTM=0.246 tol=4.65
2024-07-11 17:47:23,270 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=25.3 pTM=0.232 ipTM=0.248 tol=3.64
2024-07-11 17:47:32,969 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=25.3 pTM=0.237 ipTM=0.241 tol=4.62
2024-07-11 17:47:42,707 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=25.8 pTM=0.234 ipTM=0.261 tol=6.33
2024-07-11 17:47:52,442 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=26.2 pTM=0.244 ipTM=0.3 tol=4.38
2024-07-11 17:47:52,442 alphafold2_multimer_v3_model_4_seed_000 took 301.4s (30 recycles)
2024-07-11 17:48:02,508 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=23.3 pTM=0.253 ipTM=0.236
2024-07-11 17:48:12,297 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=22.5 pTM=0.224 ipTM=0.227 tol=17.4
2024-07-11 17:48:22,101 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=22.6 pTM=0.223 ipTM=0.231 tol=15.7
2024-07-11 17:48:31,893 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=22.7 pTM=0.216 ipTM=0.206 tol=6.28
2024-07-11 17:48:41,691 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=23.1 pTM=0.222 ipTM=0.222 tol=10.9
2024-07-11 17:48:51,486 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=23.2 pTM=0.219 ipTM=0.222 tol=9.48
2024-07-11 17:49:01,255 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=23.2 pTM=0.222 ipTM=0.206 tol=10.3
2024-07-11 17:49:11,041 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=22.9 pTM=0.21 ipTM=0.192 tol=8.34
2024-07-11 17:49:20,821 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=23.2 pTM=0.222 ipTM=0.208 tol=7.38
2024-07-11 17:49:30,595 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=23 pTM=0.209 ipTM=0.191 tol=5.41
2024-07-11 17:49:40,385 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=23.2 pTM=0.213 ipTM=0.194 tol=3.79
2024-07-11 17:49:50,180 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=23 pTM=0.209 ipTM=0.186 tol=5.63
2024-07-11 17:49:59,962 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=21.8 pTM=0.209 ipTM=0.189 tol=8.77
2024-07-11 17:50:09,726 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=22.1 pTM=0.217 ipTM=0.203 tol=7.72
2024-07-11 17:50:19,520 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=22.3 pTM=0.216 ipTM=0.191 tol=12.2
2024-07-11 17:50:29,298 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=22.1 pTM=0.218 ipTM=0.182 tol=10.5
2024-07-11 17:50:39,068 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=22.5 pTM=0.231 ipTM=0.203 tol=5.37
2024-07-11 17:50:48,839 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=22 pTM=0.215 ipTM=0.202 tol=5.12
2024-07-11 17:50:58,614 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=23.1 pTM=0.242 ipTM=0.233 tol=10.2
2024-07-11 17:51:08,373 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=24.5 pTM=0.282 ipTM=0.291 tol=14.6
2024-07-11 17:51:18,136 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=24.9 pTM=0.286 ipTM=0.291 tol=13
2024-07-11 17:51:27,883 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=24.4 pTM=0.274 ipTM=0.28 tol=8.8
2024-07-11 17:51:37,653 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=24.9 pTM=0.278 ipTM=0.277 tol=7.81
2024-07-11 17:51:47,431 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=24.6 pTM=0.268 ipTM=0.272 tol=9.34
2024-07-11 17:51:57,184 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=25.2 pTM=0.273 ipTM=0.27 tol=3.84
2024-07-11 17:52:06,918 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=24.7 pTM=0.26 ipTM=0.268 tol=3.41
2024-07-11 17:52:16,662 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=24.2 pTM=0.25 ipTM=0.247 tol=4.98
2024-07-11 17:52:26,408 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=24.7 pTM=0.261 ipTM=0.275 tol=7.76
2024-07-11 17:52:36,153 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=24.6 pTM=0.258 ipTM=0.269 tol=7.2
2024-07-11 17:52:45,896 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=26.8 pTM=0.3 ipTM=0.315 tol=8.11
2024-07-11 17:52:55,643 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=26.2 pTM=0.283 ipTM=0.312 tol=4.86
2024-07-11 17:52:55,644 alphafold2_multimer_v3_model_5_seed_000 took 302.9s (30 recycles)
2024-07-11 17:52:55,952 reranking models by 'multimer' metric
2024-07-11 17:53:26,687 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 17:54:33,141 Relaxation took 97.2s
2024-07-11 17:54:33,141 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=27.2 pTM=0.31 ipTM=0.334
2024-07-11 17:55:37,117 Relaxation took 64.0s
2024-07-11 17:55:37,117 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=26.2 pTM=0.283 ipTM=0.312
2024-07-11 17:56:32,103 Relaxation took 55.0s
2024-07-11 17:56:32,103 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=26.2 pTM=0.244 ipTM=0.3
2024-07-11 17:57:29,385 Relaxation took 57.3s
2024-07-11 17:57:29,385 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=24.1 pTM=0.246 ipTM=0.286
2024-07-11 17:58:24,948 Relaxation took 55.6s
2024-07-11 17:58:24,949 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=23 pTM=0.247 ipTM=0.253
2024-07-11 17:58:26,168 Done