2024-07-11 20:41:40,075 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 20:41:40,405 Running on GPU
2024-07-11 20:41:47,624 Found 6 citations for tools or databases
2024-07-11 20:41:47,624 Query 1/1: NU3M_PSD12 (length 571)
2024-07-11 20:41:48,092 Sleeping for 10s. Reason: PENDING
2024-07-11 20:41:58,488 Sleeping for 6s. Reason: RUNNING
2024-07-11 20:42:04,884 Sleeping for 9s. Reason: RUNNING
2024-07-11 20:42:14,291 Sleeping for 7s. Reason: RUNNING
2024-07-11 20:42:21,702 Sleeping for 9s. Reason: RUNNING
2024-07-11 20:42:32,686 Sleeping for 10s. Reason: PENDING
2024-07-11 20:42:43,115 Sleeping for 5s. Reason: RUNNING
2024-07-11 20:42:48,507 Sleeping for 6s. Reason: RUNNING
2024-07-11 20:42:54,927 Sleeping for 8s. Reason: RUNNING
2024-07-11 20:43:05,209 Setting max_seq=508, max_extra_seq=2048
2024-07-11 20:46:26,503 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=78.3 pTM=0.638 ipTM=0.13
2024-07-11 20:46:33,132 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.1 pTM=0.652 ipTM=0.144 tol=3.58
2024-07-11 20:46:39,774 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79 pTM=0.656 ipTM=0.144 tol=2.08
2024-07-11 20:46:46,419 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79 pTM=0.659 ipTM=0.149 tol=2.29
2024-07-11 20:46:53,074 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.2 pTM=0.66 ipTM=0.154 tol=1.06
2024-07-11 20:46:59,730 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.1 pTM=0.66 ipTM=0.155 tol=0.734
2024-07-11 20:47:06,403 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.2 pTM=0.659 ipTM=0.149 tol=1.09
2024-07-11 20:47:13,079 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.3 pTM=0.656 ipTM=0.155 tol=0.525
2024-07-11 20:47:19,753 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.1 pTM=0.654 ipTM=0.15 tol=0.431
2024-07-11 20:47:19,754 alphafold2_multimer_v3_model_1_seed_000 took 212.6s (8 recycles)
2024-07-11 20:47:26,648 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.2 pTM=0.606 ipTM=0.13
2024-07-11 20:47:33,334 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78 pTM=0.616 ipTM=0.124 tol=5.17
2024-07-11 20:47:40,030 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.2 pTM=0.622 ipTM=0.12 tol=2.12
2024-07-11 20:47:46,722 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.6 pTM=0.621 ipTM=0.121 tol=1.83
2024-07-11 20:47:53,416 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=77.4 pTM=0.623 ipTM=0.125 tol=1.16
2024-07-11 20:48:00,109 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77.4 pTM=0.629 ipTM=0.132 tol=2.47
2024-07-11 20:48:06,809 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.6 pTM=0.623 ipTM=0.141 tol=2.04
2024-07-11 20:48:13,504 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=76.8 pTM=0.628 ipTM=0.158 tol=1.3
2024-07-11 20:48:20,206 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=76.9 pTM=0.627 ipTM=0.163 tol=0.761
2024-07-11 20:48:26,901 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=77.1 pTM=0.633 ipTM=0.158 tol=0.777
2024-07-11 20:48:33,602 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=76.8 pTM=0.628 ipTM=0.158 tol=0.962
2024-07-11 20:48:40,307 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=76.8 pTM=0.629 ipTM=0.155 tol=0.91
2024-07-11 20:48:47,017 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=77 pTM=0.628 ipTM=0.152 tol=0.79
2024-07-11 20:48:53,739 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=77.2 pTM=0.634 ipTM=0.149 tol=0.75
2024-07-11 20:49:00,449 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=77.2 pTM=0.631 ipTM=0.148 tol=0.609
2024-07-11 20:49:07,162 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=76.8 pTM=0.63 ipTM=0.158 tol=0.734
2024-07-11 20:49:13,868 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=76.9 pTM=0.631 ipTM=0.163 tol=0.575
2024-07-11 20:49:20,579 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=76.6 pTM=0.629 ipTM=0.159 tol=1.06
2024-07-11 20:49:27,292 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=76.7 pTM=0.629 ipTM=0.162 tol=0.599
2024-07-11 20:49:34,006 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=77 pTM=0.628 ipTM=0.156 tol=1.13
2024-07-11 20:49:40,719 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=76.9 pTM=0.628 ipTM=0.154 tol=1.33
2024-07-11 20:49:47,427 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=76.6 pTM=0.625 ipTM=0.157 tol=0.548
2024-07-11 20:49:54,141 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=76.7 pTM=0.625 ipTM=0.152 tol=0.963
2024-07-11 20:50:00,861 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=77.1 pTM=0.63 ipTM=0.151 tol=0.849
2024-07-11 20:50:07,581 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=77.1 pTM=0.627 ipTM=0.148 tol=0.635
2024-07-11 20:50:14,306 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=76.9 pTM=0.626 ipTM=0.143 tol=0.551
2024-07-11 20:50:21,037 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=77 pTM=0.627 ipTM=0.144 tol=0.448
2024-07-11 20:50:21,037 alphafold2_multimer_v3_model_2_seed_000 took 181.1s (26 recycles)
2024-07-11 20:50:27,989 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.5 pTM=0.613 ipTM=0.129
2024-07-11 20:50:34,721 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.6 pTM=0.634 ipTM=0.142 tol=4.25
2024-07-11 20:50:41,447 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.8 pTM=0.642 ipTM=0.155 tol=2.35
2024-07-11 20:50:48,172 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.9 pTM=0.649 ipTM=0.177 tol=1.27
2024-07-11 20:50:54,883 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.4 pTM=0.648 ipTM=0.182 tol=0.854
2024-07-11 20:51:01,610 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=78.8 pTM=0.653 ipTM=0.188 tol=0.477
2024-07-11 20:51:01,610 alphafold2_multimer_v3_model_3_seed_000 took 40.4s (5 recycles)
2024-07-11 20:51:08,549 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=78.4 pTM=0.632 ipTM=0.218
2024-07-11 20:51:15,271 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.3 pTM=0.643 ipTM=0.174 tol=3.44
2024-07-11 20:51:21,984 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.9 pTM=0.643 ipTM=0.155 tol=2.14
2024-07-11 20:51:28,702 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.9 pTM=0.646 ipTM=0.159 tol=1.34
2024-07-11 20:51:35,427 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.9 pTM=0.644 ipTM=0.155 tol=0.96
2024-07-11 20:51:42,151 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79 pTM=0.646 ipTM=0.154 tol=0.748
2024-07-11 20:51:48,878 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=78.9 pTM=0.648 ipTM=0.156 tol=0.968
2024-07-11 20:51:55,602 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.1 pTM=0.644 ipTM=0.162 tol=1.03
2024-07-11 20:52:02,329 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.1 pTM=0.642 ipTM=0.159 tol=0.82
2024-07-11 20:52:09,056 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.1 pTM=0.644 ipTM=0.165 tol=0.33
2024-07-11 20:52:09,057 alphafold2_multimer_v3_model_4_seed_000 took 67.2s (9 recycles)
2024-07-11 20:52:15,999 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.1 pTM=0.606 ipTM=0.131
2024-07-11 20:52:22,731 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.6 pTM=0.624 ipTM=0.129 tol=2.54
2024-07-11 20:52:29,465 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.9 pTM=0.629 ipTM=0.138 tol=1.3
2024-07-11 20:52:36,200 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.4 pTM=0.636 ipTM=0.155 tol=0.953
2024-07-11 20:52:42,948 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.7 pTM=0.635 ipTM=0.144 tol=1.05
2024-07-11 20:52:49,684 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.7 pTM=0.636 ipTM=0.142 tol=0.544
2024-07-11 20:52:56,420 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.7 pTM=0.633 ipTM=0.142 tol=0.603
2024-07-11 20:53:03,156 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.6 pTM=0.633 ipTM=0.147 tol=0.293
2024-07-11 20:53:03,157 alphafold2_multimer_v3_model_5_seed_000 took 53.9s (7 recycles)
2024-07-11 20:53:03,372 reranking models by 'multimer' metric
2024-07-11 20:53:29,331 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 20:54:07,308 Relaxation took 63.9s
2024-07-11 20:54:07,308 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=78.8 pTM=0.653 ipTM=0.188
2024-07-11 20:54:19,991 Relaxation took 12.7s
2024-07-11 20:54:19,991 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.1 pTM=0.644 ipTM=0.165
2024-07-11 20:54:48,507 Relaxation took 28.5s
2024-07-11 20:54:48,507 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.1 pTM=0.654 ipTM=0.15
2024-07-11 20:55:16,065 Relaxation took 27.6s
2024-07-11 20:55:16,065 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.6 pTM=0.633 ipTM=0.147
2024-07-11 20:55:27,876 Relaxation took 11.8s
2024-07-11 20:55:27,876 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=77 pTM=0.627 ipTM=0.144
2024-07-11 20:55:30,249 Done