2024-07-11 22:55:51,517 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-11 22:55:51,828 Running on GPU
2024-07-11 22:56:06,078 Found 6 citations for tools or databases
2024-07-11 22:56:06,078 Query 1/1: O51T1_PEX26 (length 632)
2024-07-11 22:56:06,521 Sleeping for 10s. Reason: PENDING
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2024-07-11 22:57:36,615 Sleeping for 9s. Reason: PENDING
2024-07-11 22:57:46,019 Sleeping for 8s. Reason: RUNNING
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2024-07-11 22:58:24,096 Sleeping for 6s. Reason: RUNNING
2024-07-11 22:58:30,516 Sleeping for 5s. Reason: RUNNING
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2024-07-11 22:59:05,177 Setting max_seq=508, max_extra_seq=2048
2024-07-11 23:01:59,526 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=65.5 pTM=0.557 ipTM=0.292
2024-07-11 23:02:07,154 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.2 pTM=0.568 ipTM=0.405 tol=2.43
2024-07-11 23:02:14,780 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.4 pTM=0.552 ipTM=0.236 tol=1.21
2024-07-11 23:02:22,413 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=68.8 pTM=0.549 ipTM=0.232 tol=0.634
2024-07-11 23:02:30,046 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.2 pTM=0.552 ipTM=0.24 tol=1.37
2024-07-11 23:02:37,699 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69 pTM=0.548 ipTM=0.228 tol=0.715
2024-07-11 23:02:45,353 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=69.1 pTM=0.546 ipTM=0.225 tol=0.507
2024-07-11 23:02:53,008 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=68.9 pTM=0.547 ipTM=0.229 tol=0.574
2024-07-11 23:03:00,669 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=68.9 pTM=0.546 ipTM=0.227 tol=0.5
2024-07-11 23:03:08,335 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=68.9 pTM=0.543 ipTM=0.225 tol=0.45
2024-07-11 23:03:08,336 alphafold2_multimer_v3_model_1_seed_000 took 185.5s (9 recycles)
2024-07-11 23:03:16,268 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.9 pTM=0.628 ipTM=0.487
2024-07-11 23:03:23,955 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.2 pTM=0.564 ipTM=0.274 tol=4.16
2024-07-11 23:03:31,636 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=70.8 pTM=0.559 ipTM=0.324 tol=2.2
2024-07-11 23:03:39,328 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72 pTM=0.573 ipTM=0.44 tol=0.605
2024-07-11 23:03:47,020 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=70.9 pTM=0.551 ipTM=0.306 tol=0.818
2024-07-11 23:03:54,716 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=70.5 pTM=0.545 ipTM=0.233 tol=0.877
2024-07-11 23:04:02,415 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=70.8 pTM=0.541 ipTM=0.222 tol=0.818
2024-07-11 23:04:10,117 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.3 pTM=0.555 ipTM=0.414 tol=0.827
2024-07-11 23:04:17,816 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=70.6 pTM=0.545 ipTM=0.332 tol=0.673
2024-07-11 23:04:25,520 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=70.6 pTM=0.546 ipTM=0.243 tol=0.835
2024-07-11 23:04:33,221 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.4 pTM=0.539 ipTM=0.239 tol=0.584
2024-07-11 23:04:40,920 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=70.7 pTM=0.552 ipTM=0.342 tol=0.828
2024-07-11 23:04:48,620 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=70.5 pTM=0.544 ipTM=0.345 tol=0.772
2024-07-11 23:04:56,322 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=70.6 pTM=0.55 ipTM=0.331 tol=0.656
2024-07-11 23:05:04,016 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=70.5 pTM=0.547 ipTM=0.362 tol=0.733
2024-07-11 23:05:11,717 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=70.7 pTM=0.551 ipTM=0.305 tol=0.613
2024-07-11 23:05:19,418 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=69.9 pTM=0.536 ipTM=0.229 tol=0.657
2024-07-11 23:05:27,119 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=70.6 pTM=0.546 ipTM=0.294 tol=0.659
2024-07-11 23:05:34,825 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=70.8 pTM=0.547 ipTM=0.373 tol=0.6
2024-07-11 23:05:42,532 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=71.1 pTM=0.553 ipTM=0.359 tol=0.659
2024-07-11 23:05:50,238 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=70.3 pTM=0.545 ipTM=0.287 tol=0.55
2024-07-11 23:05:57,940 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=70.8 pTM=0.551 ipTM=0.339 tol=0.472
2024-07-11 23:05:57,941 alphafold2_multimer_v3_model_2_seed_000 took 169.3s (21 recycles)
2024-07-11 23:06:05,902 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.1 pTM=0.542 ipTM=0.251
2024-07-11 23:06:13,604 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=67.4 pTM=0.552 ipTM=0.245 tol=4.93
2024-07-11 23:06:21,307 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=67.6 pTM=0.562 ipTM=0.293 tol=0.891
2024-07-11 23:06:29,022 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67.9 pTM=0.549 ipTM=0.246 tol=0.85
2024-07-11 23:06:36,730 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.2 pTM=0.572 ipTM=0.319 tol=1.23
2024-07-11 23:06:44,439 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.8 pTM=0.545 ipTM=0.242 tol=0.79
2024-07-11 23:06:52,148 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.9 pTM=0.559 ipTM=0.272 tol=0.515
2024-07-11 23:06:59,854 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=67.6 pTM=0.544 ipTM=0.24 tol=0.795
2024-07-11 23:07:07,563 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=67.8 pTM=0.557 ipTM=0.263 tol=0.499
2024-07-11 23:07:07,564 alphafold2_multimer_v3_model_3_seed_000 took 69.4s (8 recycles)
2024-07-11 23:07:15,540 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.8 pTM=0.563 ipTM=0.282
2024-07-11 23:07:23,246 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=68.2 pTM=0.562 ipTM=0.265 tol=6.73
2024-07-11 23:07:30,953 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=68.5 pTM=0.578 ipTM=0.302 tol=2.19
2024-07-11 23:07:38,671 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=68.4 pTM=0.553 ipTM=0.239 tol=2.2
2024-07-11 23:07:46,386 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68.2 pTM=0.551 ipTM=0.235 tol=1.15
2024-07-11 23:07:54,106 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=68.1 pTM=0.545 ipTM=0.222 tol=1.39
2024-07-11 23:08:01,824 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=67.9 pTM=0.543 ipTM=0.221 tol=0.694
2024-07-11 23:08:09,549 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=68.6 pTM=0.547 ipTM=0.236 tol=0.849
2024-07-11 23:08:17,275 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=67.9 pTM=0.542 ipTM=0.221 tol=0.822
2024-07-11 23:08:25,004 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=68.1 pTM=0.544 ipTM=0.223 tol=1.12
2024-07-11 23:08:32,727 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=67.8 pTM=0.536 ipTM=0.203 tol=1.16
2024-07-11 23:08:40,448 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=67.9 pTM=0.543 ipTM=0.222 tol=0.98
2024-07-11 23:08:48,169 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=68.1 pTM=0.542 ipTM=0.236 tol=0.733
2024-07-11 23:08:55,893 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=68.1 pTM=0.543 ipTM=0.227 tol=0.471
2024-07-11 23:08:55,894 alphafold2_multimer_v3_model_4_seed_000 took 108.1s (13 recycles)
2024-07-11 23:09:03,862 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=64.5 pTM=0.529 ipTM=0.216
2024-07-11 23:09:11,570 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.8 pTM=0.554 ipTM=0.243 tol=3.7
2024-07-11 23:09:19,275 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=66.9 pTM=0.546 ipTM=0.231 tol=1.71
2024-07-11 23:09:26,984 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=67.6 pTM=0.552 ipTM=0.233 tol=1.37
2024-07-11 23:09:34,687 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=67.6 pTM=0.55 ipTM=0.233 tol=0.546
2024-07-11 23:09:42,388 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=67.5 pTM=0.546 ipTM=0.223 tol=0.707
2024-07-11 23:09:50,090 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=67.4 pTM=0.545 ipTM=0.226 tol=0.542
2024-07-11 23:09:57,792 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=67.6 pTM=0.546 ipTM=0.226 tol=0.429
2024-07-11 23:09:57,793 alphafold2_multimer_v3_model_5_seed_000 took 61.6s (7 recycles)
2024-07-11 23:09:58,056 reranking models by 'multimer' metric
2024-07-11 23:09:58,980 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-11 23:10:18,847 Relaxation took 20.8s
2024-07-11 23:10:18,847 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=70.8 pTM=0.551 ipTM=0.339
2024-07-11 23:10:39,452 Relaxation took 20.6s
2024-07-11 23:10:39,452 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=67.8 pTM=0.557 ipTM=0.263
2024-07-11 23:10:58,248 Relaxation took 18.8s
2024-07-11 23:10:58,249 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=68.1 pTM=0.543 ipTM=0.227
2024-07-11 23:11:14,297 Relaxation took 16.0s
2024-07-11 23:11:14,297 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=67.6 pTM=0.546 ipTM=0.226
2024-07-11 23:11:31,318 Relaxation took 17.0s
2024-07-11 23:11:31,318 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=68.9 pTM=0.543 ipTM=0.225
2024-07-11 23:11:32,742 Done