2024-07-12 02:30:52,763 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 02:30:53,122 Running on GPU
2024-07-12 02:31:14,019 Found 6 citations for tools or databases
2024-07-12 02:31:14,020 Query 1/1: OR4KD_HV353 (length 420)
2024-07-12 02:31:14,477 Sleeping for 8s. Reason: PENDING
2024-07-12 02:31:22,898 Sleeping for 10s. Reason: RUNNING
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2024-07-12 02:32:10,019 Sleeping for 6s. Reason: RUNNING
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2024-07-12 02:33:09,482 Sleeping for 10s. Reason: PENDING
2024-07-12 02:33:19,906 Sleeping for 10s. Reason: RUNNING
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2024-07-12 02:33:48,176 Sleeping for 6s. Reason: RUNNING
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2024-07-12 02:34:37,098 Sleeping for 9s. Reason: RUNNING
2024-07-12 02:34:48,779 Setting max_seq=508, max_extra_seq=2048
2024-07-12 02:38:05,308 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=66.6 pTM=0.617 ipTM=0.166
2024-07-12 02:38:09,666 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=68.2 pTM=0.598 ipTM=0.176 tol=16.8
2024-07-12 02:38:14,018 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.9 pTM=0.596 ipTM=0.189 tol=1.47
2024-07-12 02:38:18,369 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.4 pTM=0.583 ipTM=0.149 tol=0.878
2024-07-12 02:38:22,722 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.6 pTM=0.582 ipTM=0.155 tol=0.747
2024-07-12 02:38:27,077 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.8 pTM=0.587 ipTM=0.155 tol=0.396
2024-07-12 02:38:27,078 alphafold2_multimer_v3_model_1_seed_000 took 150.2s (5 recycles)
2024-07-12 02:38:31,570 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.4 pTM=0.646 ipTM=0.23
2024-07-12 02:38:35,927 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.6 pTM=0.643 ipTM=0.192 tol=1.79
2024-07-12 02:38:40,277 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.9 pTM=0.612 ipTM=0.14 tol=2.17
2024-07-12 02:38:44,629 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.7 pTM=0.607 ipTM=0.123 tol=4.98
2024-07-12 02:38:48,982 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=72.2 pTM=0.608 ipTM=0.124 tol=9.88
2024-07-12 02:38:53,335 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.2 pTM=0.601 ipTM=0.118 tol=5.02
2024-07-12 02:38:57,682 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.8 pTM=0.604 ipTM=0.136 tol=9.76
2024-07-12 02:39:02,030 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=72.1 pTM=0.611 ipTM=0.149 tol=0.334
2024-07-12 02:39:02,031 alphafold2_multimer_v3_model_2_seed_000 took 34.8s (7 recycles)
2024-07-12 02:39:06,518 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.7 pTM=0.661 ipTM=0.168
2024-07-12 02:39:10,882 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=73.4 pTM=0.714 ipTM=0.415 tol=18.3
2024-07-12 02:39:15,243 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.8 pTM=0.636 ipTM=0.134 tol=5.25
2024-07-12 02:39:19,603 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.3 pTM=0.627 ipTM=0.127 tol=7.27
2024-07-12 02:39:23,962 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.1 pTM=0.644 ipTM=0.17 tol=8.56
2024-07-12 02:39:28,319 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=73.2 pTM=0.641 ipTM=0.147 tol=1.84
2024-07-12 02:39:32,676 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=74.3 pTM=0.651 ipTM=0.173 tol=1.08
2024-07-12 02:39:37,036 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=74.4 pTM=0.654 ipTM=0.17 tol=0.711
2024-07-12 02:39:41,399 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=75.1 pTM=0.661 ipTM=0.188 tol=0.945
2024-07-12 02:39:45,760 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=75.1 pTM=0.661 ipTM=0.181 tol=0.838
2024-07-12 02:39:50,122 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=75.6 pTM=0.663 ipTM=0.187 tol=0.384
2024-07-12 02:39:50,123 alphafold2_multimer_v3_model_3_seed_000 took 48.0s (10 recycles)
2024-07-12 02:39:54,613 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=70.9 pTM=0.658 ipTM=0.168
2024-07-12 02:39:58,983 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.7 pTM=0.693 ipTM=0.333 tol=17.5
2024-07-12 02:40:03,349 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=69.8 pTM=0.653 ipTM=0.165 tol=17.4
2024-07-12 02:40:07,709 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=70.4 pTM=0.642 ipTM=0.154 tol=1.72
2024-07-12 02:40:12,071 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.8 pTM=0.643 ipTM=0.173 tol=2.34
2024-07-12 02:40:16,426 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=70.8 pTM=0.632 ipTM=0.152 tol=0.715
2024-07-12 02:40:20,779 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.2 pTM=0.632 ipTM=0.152 tol=0.539
2024-07-12 02:40:25,134 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70.5 pTM=0.626 ipTM=0.156 tol=0.867
2024-07-12 02:40:29,486 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=70 pTM=0.619 ipTM=0.152 tol=0.427
2024-07-12 02:40:29,486 alphafold2_multimer_v3_model_4_seed_000 took 39.2s (8 recycles)
2024-07-12 02:40:33,987 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=72.4 pTM=0.654 ipTM=0.156
2024-07-12 02:40:38,357 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=72.7 pTM=0.679 ipTM=0.302 tol=18.4
2024-07-12 02:40:42,721 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.9 pTM=0.645 ipTM=0.176 tol=4.48
2024-07-12 02:40:47,088 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.4 pTM=0.657 ipTM=0.201 tol=2.75
2024-07-12 02:40:51,455 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.6 pTM=0.671 ipTM=0.227 tol=0.716
2024-07-12 02:40:55,823 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.6 pTM=0.673 ipTM=0.219 tol=0.782
2024-07-12 02:41:00,198 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.9 pTM=0.689 ipTM=0.265 tol=1.39
2024-07-12 02:41:04,566 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.2 pTM=0.679 ipTM=0.234 tol=0.832
2024-07-12 02:41:08,934 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.2 pTM=0.682 ipTM=0.253 tol=0.667
2024-07-12 02:41:13,300 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.1 pTM=0.677 ipTM=0.227 tol=0.633
2024-07-12 02:41:17,669 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76.7 pTM=0.687 ipTM=0.265 tol=0.53
2024-07-12 02:41:22,040 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=76.8 pTM=0.683 ipTM=0.234 tol=0.409
2024-07-12 02:41:22,040 alphafold2_multimer_v3_model_5_seed_000 took 52.4s (11 recycles)
2024-07-12 02:41:22,167 reranking models by 'multimer' metric
2024-07-12 02:41:43,239 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 02:42:05,456 Relaxation took 43.3s
2024-07-12 02:42:05,456 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.8 pTM=0.683 ipTM=0.234
2024-07-12 02:42:15,279 Relaxation took 9.8s
2024-07-12 02:42:15,280 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=75.6 pTM=0.663 ipTM=0.187
2024-07-12 02:42:35,682 Relaxation took 20.4s
2024-07-12 02:42:35,682 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=70 pTM=0.619 ipTM=0.152
2024-07-12 02:42:47,964 Relaxation took 12.3s
2024-07-12 02:42:47,964 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=72.1 pTM=0.611 ipTM=0.149
2024-07-12 02:42:56,234 Relaxation took 8.3s
2024-07-12 02:42:56,234 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=69.8 pTM=0.587 ipTM=0.155
2024-07-12 02:43:01,949 Done