2024-07-12 02:58:40,802 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 02:58:41,120 Running on GPU
2024-07-12 02:58:52,949 Found 6 citations for tools or databases
2024-07-12 02:58:52,949 Query 1/1: OR8B3_GLRA3 (length 777)
2024-07-12 02:58:53,407 Sleeping for 10s. Reason: PENDING
2024-07-12 02:59:03,837 Sleeping for 10s. Reason: RUNNING
2024-07-12 02:59:14,246 Sleeping for 5s. Reason: RUNNING
2024-07-12 02:59:19,702 Sleeping for 7s. Reason: RUNNING
2024-07-12 02:59:27,125 Sleeping for 10s. Reason: RUNNING
2024-07-12 02:59:37,561 Sleeping for 6s. Reason: RUNNING
2024-07-12 02:59:43,992 Sleeping for 10s. Reason: RUNNING
2024-07-12 02:59:54,415 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:00:01,826 Sleeping for 8s. Reason: RUNNING
2024-07-12 03:00:10,246 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:00:15,680 Sleeping for 10s. Reason: RUNNING
2024-07-12 03:00:26,103 Sleeping for 9s. Reason: RUNNING
2024-07-12 03:00:35,524 Sleeping for 8s. Reason: RUNNING
2024-07-12 03:00:43,936 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:00:50,354 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:00:56,788 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:01:05,170 Sleeping for 7s. Reason: PENDING
2024-07-12 03:01:12,586 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:01:20,023 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:01:25,440 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:01:31,849 Sleeping for 10s. Reason: RUNNING
2024-07-12 03:01:42,270 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:01:47,692 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:01:55,104 Sleeping for 9s. Reason: RUNNING
2024-07-12 03:02:04,543 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:02:09,972 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:02:17,401 Sleeping for 8s. Reason: RUNNING
2024-07-12 03:02:25,841 Sleeping for 8s. Reason: RUNNING
2024-07-12 03:02:34,270 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:02:40,681 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:02:48,105 Sleeping for 10s. Reason: RUNNING
2024-07-12 03:02:58,522 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:03:03,936 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:03:15,968 Setting max_seq=508, max_extra_seq=2048
2024-07-12 03:06:43,590 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.6 pTM=0.445 ipTM=0.17
2024-07-12 03:06:55,678 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.6 pTM=0.471 ipTM=0.182 tol=5.13
2024-07-12 03:07:07,810 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.5 pTM=0.471 ipTM=0.18 tol=2.55
2024-07-12 03:07:19,991 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=76.3 pTM=0.473 ipTM=0.188 tol=1.81
2024-07-12 03:07:32,166 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.2 pTM=0.472 ipTM=0.188 tol=2.41
2024-07-12 03:07:44,359 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=76.3 pTM=0.475 ipTM=0.194 tol=1.75
2024-07-12 03:07:56,575 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=76.4 pTM=0.475 ipTM=0.194 tol=1.08
2024-07-12 03:08:08,801 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=76.6 pTM=0.477 ipTM=0.196 tol=1.67
2024-07-12 03:08:21,048 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=76.6 pTM=0.476 ipTM=0.195 tol=1.18
2024-07-12 03:08:33,304 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=76.8 pTM=0.478 ipTM=0.196 tol=1.05
2024-07-12 03:08:45,568 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=76.6 pTM=0.479 ipTM=0.203 tol=0.486
2024-07-12 03:08:45,569 alphafold2_multimer_v3_model_1_seed_000 took 293.4s (10 recycles)
2024-07-12 03:08:58,214 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.8 pTM=0.446 ipTM=0.153
2024-07-12 03:09:10,511 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.9 pTM=0.473 ipTM=0.176 tol=7.61
2024-07-12 03:09:22,824 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.1 pTM=0.47 ipTM=0.176 tol=1.45
2024-07-12 03:09:35,122 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.4 pTM=0.469 ipTM=0.167 tol=1.16
2024-07-12 03:09:47,437 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.2 pTM=0.469 ipTM=0.162 tol=0.496
2024-07-12 03:09:47,438 alphafold2_multimer_v3_model_2_seed_000 took 61.5s (4 recycles)
2024-07-12 03:10:00,102 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=73.8 pTM=0.474 ipTM=0.193
2024-07-12 03:10:12,401 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=73.9 pTM=0.48 ipTM=0.179 tol=5.66
2024-07-12 03:10:24,715 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=74.1 pTM=0.486 ipTM=0.187 tol=2.02
2024-07-12 03:10:37,038 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=74.2 pTM=0.485 ipTM=0.187 tol=2.19
2024-07-12 03:10:49,363 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74.2 pTM=0.486 ipTM=0.184 tol=3.16
2024-07-12 03:11:01,687 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.5 pTM=0.488 ipTM=0.188 tol=1.02
2024-07-12 03:11:14,029 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=74.6 pTM=0.489 ipTM=0.191 tol=1.25
2024-07-12 03:11:26,343 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=74.6 pTM=0.491 ipTM=0.196 tol=0.883
2024-07-12 03:11:38,660 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=74.7 pTM=0.492 ipTM=0.199 tol=0.756
2024-07-12 03:11:50,973 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=74.7 pTM=0.493 ipTM=0.203 tol=1.17
2024-07-12 03:12:03,286 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=74.6 pTM=0.494 ipTM=0.208 tol=0.736
2024-07-12 03:12:15,599 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=74.6 pTM=0.493 ipTM=0.21 tol=0.621
2024-07-12 03:12:27,910 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=74.4 pTM=0.495 ipTM=0.214 tol=0.411
2024-07-12 03:12:27,911 alphafold2_multimer_v3_model_3_seed_000 took 160.1s (12 recycles)
2024-07-12 03:12:40,564 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71.2 pTM=0.458 ipTM=0.245
2024-07-12 03:12:52,873 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.6 pTM=0.476 ipTM=0.209 tol=2.62
2024-07-12 03:13:05,194 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.8 pTM=0.485 ipTM=0.202 tol=1.53
2024-07-12 03:13:17,552 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.6 pTM=0.487 ipTM=0.196 tol=3.01
2024-07-12 03:13:29,888 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.7 pTM=0.49 ipTM=0.203 tol=2.66
2024-07-12 03:13:42,226 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.8 pTM=0.488 ipTM=0.196 tol=1.54
2024-07-12 03:13:54,581 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.1 pTM=0.493 ipTM=0.204 tol=3.03
2024-07-12 03:14:06,922 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.9 pTM=0.489 ipTM=0.196 tol=3.06
2024-07-12 03:14:19,268 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.9 pTM=0.492 ipTM=0.195 tol=2.67
2024-07-12 03:14:31,641 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=76.1 pTM=0.49 ipTM=0.197 tol=2.71
2024-07-12 03:14:43,976 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.8 pTM=0.491 ipTM=0.199 tol=2.6
2024-07-12 03:14:56,319 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.9 pTM=0.489 ipTM=0.194 tol=1.82
2024-07-12 03:15:08,658 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.8 pTM=0.492 ipTM=0.199 tol=2.68
2024-07-12 03:15:21,013 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75.8 pTM=0.491 ipTM=0.196 tol=2.21
2024-07-12 03:15:33,343 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.8 pTM=0.491 ipTM=0.198 tol=2.36
2024-07-12 03:15:45,682 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=75.6 pTM=0.489 ipTM=0.196 tol=1.45
2024-07-12 03:15:58,005 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=75.7 pTM=0.492 ipTM=0.201 tol=1.54
2024-07-12 03:16:10,330 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=75.6 pTM=0.489 ipTM=0.194 tol=1.97
2024-07-12 03:16:22,672 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.6 pTM=0.49 ipTM=0.195 tol=2.05
2024-07-12 03:16:35,014 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=75.6 pTM=0.488 ipTM=0.194 tol=2.09
2024-07-12 03:16:47,366 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.6 pTM=0.489 ipTM=0.193 tol=1.79
2024-07-12 03:16:59,701 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=75.5 pTM=0.487 ipTM=0.192 tol=1.6
2024-07-12 03:17:12,060 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=75.7 pTM=0.489 ipTM=0.193 tol=1.9
2024-07-12 03:17:24,407 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=75.7 pTM=0.488 ipTM=0.192 tol=2.33
2024-07-12 03:17:36,751 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=76 pTM=0.494 ipTM=0.201 tol=2.44
2024-07-12 03:17:49,112 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=75.6 pTM=0.488 ipTM=0.196 tol=2.13
2024-07-12 03:18:01,459 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=75.6 pTM=0.491 ipTM=0.201 tol=1.64
2024-07-12 03:18:13,790 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=75.8 pTM=0.489 ipTM=0.197 tol=1.71
2024-07-12 03:18:26,136 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.8 pTM=0.491 ipTM=0.199 tol=1.48
2024-07-12 03:18:38,470 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75.5 pTM=0.489 ipTM=0.195 tol=1.46
2024-07-12 03:18:50,801 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=75.6 pTM=0.492 ipTM=0.2 tol=2.01
2024-07-12 03:18:50,802 alphafold2_multimer_v3_model_4_seed_000 took 382.5s (30 recycles)
2024-07-12 03:19:03,485 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.4 pTM=0.451 ipTM=0.172
2024-07-12 03:19:15,832 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=73.3 pTM=0.463 ipTM=0.148 tol=6.46
2024-07-12 03:19:28,160 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=73.6 pTM=0.47 ipTM=0.173 tol=13.7
2024-07-12 03:19:40,474 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=74.4 pTM=0.487 ipTM=0.201 tol=4.75
2024-07-12 03:19:52,817 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=74.9 pTM=0.484 ipTM=0.193 tol=2.36
2024-07-12 03:20:05,132 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.1 pTM=0.492 ipTM=0.216 tol=3.29
2024-07-12 03:20:17,455 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.4 pTM=0.493 ipTM=0.207 tol=3.84
2024-07-12 03:20:29,786 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.2 pTM=0.494 ipTM=0.218 tol=2.76
2024-07-12 03:20:42,109 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=75.1 pTM=0.493 ipTM=0.206 tol=3.03
2024-07-12 03:20:54,405 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=75 pTM=0.495 ipTM=0.218 tol=3.59
2024-07-12 03:21:06,727 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75.1 pTM=0.492 ipTM=0.209 tol=3.16
2024-07-12 03:21:19,030 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=74.9 pTM=0.491 ipTM=0.207 tol=5.37
2024-07-12 03:21:31,339 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=75 pTM=0.49 ipTM=0.202 tol=4.25
2024-07-12 03:21:43,651 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=74.6 pTM=0.49 ipTM=0.206 tol=3.12
2024-07-12 03:21:55,962 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=74.9 pTM=0.489 ipTM=0.199 tol=3.09
2024-07-12 03:22:08,280 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=74.6 pTM=0.492 ipTM=0.212 tol=2.74
2024-07-12 03:22:20,595 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=74.8 pTM=0.491 ipTM=0.206 tol=3.1
2024-07-12 03:22:32,890 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=74.4 pTM=0.491 ipTM=0.211 tol=3.69
2024-07-12 03:22:45,185 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=74.8 pTM=0.492 ipTM=0.207 tol=3.83
2024-07-12 03:22:57,487 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=74.6 pTM=0.491 ipTM=0.214 tol=3.32
2024-07-12 03:23:09,797 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=74.8 pTM=0.489 ipTM=0.203 tol=3.61
2024-07-12 03:23:22,115 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=74.4 pTM=0.49 ipTM=0.212 tol=3.88
2024-07-12 03:23:34,425 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=74.7 pTM=0.49 ipTM=0.208 tol=5.3
2024-07-12 03:23:46,733 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=74.7 pTM=0.491 ipTM=0.206 tol=4.58
2024-07-12 03:23:59,060 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=73.7 pTM=0.491 ipTM=0.205 tol=6.27
2024-07-12 03:24:11,406 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=74.3 pTM=0.485 ipTM=0.198 tol=7.57
2024-07-12 03:24:23,732 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=74.5 pTM=0.485 ipTM=0.198 tol=2.4
2024-07-12 03:24:36,056 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=74.6 pTM=0.486 ipTM=0.197 tol=2.04
2024-07-12 03:24:48,376 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=74.6 pTM=0.486 ipTM=0.202 tol=1.82
2024-07-12 03:25:00,702 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=74.4 pTM=0.484 ipTM=0.198 tol=1.72
2024-07-12 03:25:13,014 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=74.4 pTM=0.486 ipTM=0.207 tol=1.84
2024-07-12 03:25:13,015 alphafold2_multimer_v3_model_5_seed_000 took 381.8s (30 recycles)
2024-07-12 03:25:13,397 reranking models by 'multimer' metric
2024-07-12 03:25:22,187 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 03:26:20,437 Relaxation took 67.0s
2024-07-12 03:26:20,437 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=74.4 pTM=0.495 ipTM=0.214
2024-07-12 03:27:06,829 Relaxation took 46.4s
2024-07-12 03:27:06,829 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=74.4 pTM=0.486 ipTM=0.207
2024-07-12 03:27:50,919 Relaxation took 44.1s
2024-07-12 03:27:50,919 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75.6 pTM=0.492 ipTM=0.2
2024-07-12 03:28:13,975 Relaxation took 23.1s
2024-07-12 03:28:13,975 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.6 pTM=0.479 ipTM=0.203
2024-07-12 03:28:33,924 Relaxation took 19.9s
2024-07-12 03:28:33,924 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.2 pTM=0.469 ipTM=0.162
2024-07-12 03:28:35,469 Done