2024-07-12 03:50:20,490 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 03:50:23,102 Running on GPU
2024-07-12 03:52:10,618 Found 6 citations for tools or databases
2024-07-12 03:52:10,619 Query 1/1: P4R3A_S19A1 (length 1424)
2024-07-12 03:52:11,055 Sleeping for 5s. Reason: PENDING
2024-07-12 03:52:16,482 Sleeping for 10s. Reason: RUNNING
2024-07-12 03:52:26,911 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:52:32,330 Sleeping for 9s. Reason: RUNNING
2024-07-12 03:52:41,745 Sleeping for 10s. Reason: RUNNING
2024-07-12 03:52:52,163 Sleeping for 8s. Reason: RUNNING
2024-07-12 03:53:00,586 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:53:07,016 Sleeping for 6s. Reason: RUNNING
2024-07-12 03:53:13,437 Sleeping for 10s. Reason: RUNNING
2024-07-12 03:53:25,489 Sleeping for 8s. Reason: PENDING
2024-07-12 03:53:33,932 Sleeping for 5s. Reason: RUNNING
2024-07-12 03:53:39,333 Sleeping for 9s. Reason: RUNNING
2024-07-12 03:53:48,767 Sleeping for 8s. Reason: RUNNING
2024-07-12 03:53:57,210 Sleeping for 7s. Reason: RUNNING
2024-07-12 03:54:07,342 Setting max_seq=508, max_extra_seq=2048
2024-07-12 03:57:55,962 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=63.1 pTM=0.413 ipTM=0.163
2024-07-12 03:58:49,302 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=64.2 pTM=0.4 ipTM=0.166 tol=15.1
2024-07-12 03:59:42,700 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=63.5 pTM=0.401 ipTM=0.163 tol=7.29
2024-07-12 04:00:36,157 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=64.2 pTM=0.4 ipTM=0.171 tol=6.57
2024-07-12 04:01:29,613 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=64.6 pTM=0.4 ipTM=0.169 tol=5.38
2024-07-12 04:02:23,015 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=64.6 pTM=0.402 ipTM=0.172 tol=3.72
2024-07-12 04:03:16,421 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=64.7 pTM=0.4 ipTM=0.174 tol=4.87
2024-07-12 04:04:09,862 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=64.9 pTM=0.403 ipTM=0.175 tol=4
2024-07-12 04:05:03,276 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=64.8 pTM=0.402 ipTM=0.174 tol=3.68
2024-07-12 04:05:56,694 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=64.4 pTM=0.403 ipTM=0.179 tol=3.38
2024-07-12 04:06:50,085 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=64.8 pTM=0.402 ipTM=0.2 tol=3.07
2024-07-12 04:07:43,441 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=64.9 pTM=0.413 ipTM=0.236 tol=4.63
2024-07-12 04:08:36,764 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.5 pTM=0.424 ipTM=0.267 tol=4.46
2024-07-12 04:09:30,080 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.4 pTM=0.431 ipTM=0.292 tol=2.56
2024-07-12 04:10:23,406 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=65.5 pTM=0.436 ipTM=0.305 tol=2.46
2024-07-12 04:11:16,716 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=65.8 pTM=0.443 ipTM=0.328 tol=2.36
2024-07-12 04:12:10,020 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.4 pTM=0.449 ipTM=0.34 tol=2.43
2024-07-12 04:13:03,319 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=65.8 pTM=0.45 ipTM=0.346 tol=6.64
2024-07-12 04:13:56,584 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=66 pTM=0.449 ipTM=0.344 tol=4.99
2024-07-12 04:14:49,870 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=66 pTM=0.457 ipTM=0.362 tol=3.51
2024-07-12 04:15:43,144 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=66.1 pTM=0.456 ipTM=0.361 tol=9.77
2024-07-12 04:16:36,447 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=66.2 pTM=0.456 ipTM=0.366 tol=4.9
2024-07-12 04:17:29,721 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=66.3 pTM=0.467 ipTM=0.386 tol=2.37
2024-07-12 04:18:23,002 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=66.1 pTM=0.462 ipTM=0.377 tol=3.24
2024-07-12 04:19:16,289 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=66.1 pTM=0.463 ipTM=0.378 tol=6.62
2024-07-12 04:20:09,555 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=66.1 pTM=0.46 ipTM=0.368 tol=3.43
2024-07-12 04:21:02,832 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=66.3 pTM=0.464 ipTM=0.377 tol=3.51
2024-07-12 04:21:56,130 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=66.2 pTM=0.466 ipTM=0.379 tol=3.52
2024-07-12 04:22:49,408 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=66.2 pTM=0.468 ipTM=0.388 tol=2.91
2024-07-12 04:23:42,685 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=66.4 pTM=0.471 ipTM=0.39 tol=2.84
2024-07-12 04:24:35,948 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=66.4 pTM=0.476 ipTM=0.399 tol=2.54
2024-07-12 04:24:35,949 alphafold2_multimer_v3_model_1_seed_000 took 1767.0s (30 recycles)
2024-07-12 04:25:30,633 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=63.4 pTM=0.429 ipTM=0.2
2024-07-12 04:26:24,158 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=64.3 pTM=0.422 ipTM=0.172 tol=7.21
2024-07-12 04:27:17,666 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=63.8 pTM=0.423 ipTM=0.178 tol=5.83
2024-07-12 04:28:11,219 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=64.9 pTM=0.424 ipTM=0.181 tol=5.89
2024-07-12 04:29:04,747 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=64.7 pTM=0.422 ipTM=0.178 tol=6.36
2024-07-12 04:29:58,270 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=64.9 pTM=0.426 ipTM=0.178 tol=5.3
2024-07-12 04:30:51,825 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=65.1 pTM=0.427 ipTM=0.18 tol=3.96
2024-07-12 04:31:45,377 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=65.3 pTM=0.428 ipTM=0.185 tol=3.56
2024-07-12 04:32:38,899 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=65.2 pTM=0.428 ipTM=0.187 tol=2.31
2024-07-12 04:33:32,433 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=65.2 pTM=0.427 ipTM=0.187 tol=4.32
2024-07-12 04:34:25,973 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=65.4 pTM=0.427 ipTM=0.187 tol=3.39
2024-07-12 04:35:19,506 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=65.4 pTM=0.429 ipTM=0.193 tol=2.26
2024-07-12 04:36:13,028 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=65.7 pTM=0.433 ipTM=0.203 tol=2.48
2024-07-12 04:37:06,503 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=65.6 pTM=0.436 ipTM=0.211 tol=2.07
2024-07-12 04:38:00,024 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=65.5 pTM=0.436 ipTM=0.213 tol=2.41
2024-07-12 04:38:53,559 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=65.4 pTM=0.432 ipTM=0.204 tol=3.26
2024-07-12 04:39:47,106 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=65.2 pTM=0.431 ipTM=0.196 tol=2.53
2024-07-12 04:40:40,643 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=65.4 pTM=0.434 ipTM=0.202 tol=1.12
2024-07-12 04:41:34,187 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=65.4 pTM=0.437 ipTM=0.208 tol=0.879
2024-07-12 04:42:27,727 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=65.5 pTM=0.437 ipTM=0.209 tol=1.1
2024-07-12 04:43:21,255 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=65.5 pTM=0.436 ipTM=0.208 tol=1.13
2024-07-12 04:44:14,769 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=65.4 pTM=0.435 ipTM=0.208 tol=1.44
2024-07-12 04:45:08,281 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=65.6 pTM=0.44 ipTM=0.222 tol=1.46
2024-07-12 04:46:01,836 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=65.5 pTM=0.435 ipTM=0.209 tol=0.901
2024-07-12 04:46:55,388 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=65.4 pTM=0.434 ipTM=0.207 tol=0.97
2024-07-12 04:47:48,916 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=65.4 pTM=0.435 ipTM=0.208 tol=0.958
2024-07-12 04:48:42,428 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=65.6 pTM=0.437 ipTM=0.209 tol=1.02
2024-07-12 04:49:35,931 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=65.5 pTM=0.434 ipTM=0.206 tol=1.38
2024-07-12 04:50:29,511 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=65.4 pTM=0.431 ipTM=0.198 tol=1.63
2024-07-12 04:51:23,062 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=65.4 pTM=0.432 ipTM=0.196 tol=1.07
2024-07-12 04:52:16,591 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=65.4 pTM=0.433 ipTM=0.204 tol=0.98
2024-07-12 04:52:16,593 alphafold2_multimer_v3_model_2_seed_000 took 1659.4s (30 recycles)
2024-07-12 04:53:11,430 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=64.4 pTM=0.418 ipTM=0.183
2024-07-12 04:54:05,052 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=64.2 pTM=0.401 ipTM=0.162 tol=12.8
2024-07-12 04:54:58,743 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=63.8 pTM=0.394 ipTM=0.153 tol=8.66
2024-07-12 04:55:52,434 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=64.2 pTM=0.394 ipTM=0.152 tol=11.1
2024-07-12 04:56:46,117 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=64.6 pTM=0.397 ipTM=0.155 tol=12.9
2024-07-12 04:57:39,828 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=64.6 pTM=0.401 ipTM=0.16 tol=13.2
2024-07-12 04:58:33,571 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=64.9 pTM=0.398 ipTM=0.16 tol=8.55
2024-07-12 04:59:27,297 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=64.8 pTM=0.397 ipTM=0.158 tol=6.27
2024-07-12 05:00:21,021 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=64.8 pTM=0.396 ipTM=0.155 tol=7.78
2024-07-12 05:01:14,730 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=64.6 pTM=0.396 ipTM=0.157 tol=7.41
2024-07-12 05:02:08,438 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=64.6 pTM=0.396 ipTM=0.155 tol=5.2
2024-07-12 05:03:02,124 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=64.4 pTM=0.396 ipTM=0.155 tol=6.37
2024-07-12 05:03:55,853 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=64.6 pTM=0.396 ipTM=0.154 tol=6.72
2024-07-12 05:04:49,590 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=64.5 pTM=0.395 ipTM=0.152 tol=7.35
2024-07-12 05:05:43,283 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=64.6 pTM=0.394 ipTM=0.153 tol=7.7
2024-07-12 05:06:36,969 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=64.4 pTM=0.393 ipTM=0.156 tol=5.19
2024-07-12 05:07:30,660 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=64.6 pTM=0.396 ipTM=0.156 tol=4.09
2024-07-12 05:08:24,324 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=64.7 pTM=0.397 ipTM=0.157 tol=3
2024-07-12 05:09:18,015 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=64.8 pTM=0.398 ipTM=0.157 tol=2.58
2024-07-12 05:10:11,678 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=64.9 pTM=0.398 ipTM=0.158 tol=2.45
2024-07-12 05:11:05,327 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=64.8 pTM=0.398 ipTM=0.157 tol=3.11
2024-07-12 05:11:58,969 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=64.9 pTM=0.398 ipTM=0.159 tol=4.02
2024-07-12 05:12:52,627 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=64.9 pTM=0.398 ipTM=0.161 tol=3.41
2024-07-12 05:13:46,262 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=65.1 pTM=0.4 ipTM=0.163 tol=2.27
2024-07-12 05:14:39,936 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=64.9 pTM=0.399 ipTM=0.166 tol=3.3
2024-07-12 05:15:33,604 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=65 pTM=0.4 ipTM=0.163 tol=3.47
2024-07-12 05:16:27,311 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=65.2 pTM=0.401 ipTM=0.163 tol=2.72
2024-07-12 05:17:20,991 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=65.3 pTM=0.402 ipTM=0.163 tol=2.58
2024-07-12 05:18:14,644 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=65.3 pTM=0.403 ipTM=0.165 tol=2.38
2024-07-12 05:19:08,287 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=65.2 pTM=0.402 ipTM=0.165 tol=2.87
2024-07-12 05:20:01,956 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=65.2 pTM=0.401 ipTM=0.164 tol=4.99
2024-07-12 05:20:01,957 alphafold2_multimer_v3_model_3_seed_000 took 1664.2s (30 recycles)
2024-07-12 05:20:56,641 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=62.9 pTM=0.417 ipTM=0.214
2024-07-12 05:21:50,146 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=63.1 pTM=0.404 ipTM=0.181 tol=14.2
2024-07-12 05:22:43,699 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=63 pTM=0.4 ipTM=0.176 tol=9.2
2024-07-12 05:23:37,249 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=63.7 pTM=0.401 ipTM=0.177 tol=6.05
2024-07-12 05:24:30,823 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=63.6 pTM=0.399 ipTM=0.176 tol=3.7
2024-07-12 05:25:24,347 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=63.7 pTM=0.401 ipTM=0.186 tol=3.14
2024-07-12 05:26:17,841 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=64.2 pTM=0.406 ipTM=0.202 tol=2.46
2024-07-12 05:27:11,328 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=64.3 pTM=0.408 ipTM=0.205 tol=4.01
2024-07-12 05:28:04,798 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=64.7 pTM=0.411 ipTM=0.214 tol=2.49
2024-07-12 05:28:58,268 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=64.2 pTM=0.412 ipTM=0.225 tol=1.86
2024-07-12 05:29:51,733 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=64.4 pTM=0.413 ipTM=0.227 tol=1.48
2024-07-12 05:30:45,166 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=64.2 pTM=0.419 ipTM=0.244 tol=1.59
2024-07-12 05:31:38,576 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=64.8 pTM=0.428 ipTM=0.259 tol=1.67
2024-07-12 05:32:31,978 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=64.8 pTM=0.431 ipTM=0.268 tol=1.83
2024-07-12 05:33:25,381 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=65.1 pTM=0.435 ipTM=0.272 tol=1.9
2024-07-12 05:34:18,794 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=64.8 pTM=0.435 ipTM=0.275 tol=4.01
2024-07-12 05:35:12,208 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=64.6 pTM=0.437 ipTM=0.276 tol=3.32
2024-07-12 05:36:05,628 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=65.1 pTM=0.449 ipTM=0.306 tol=2.69
2024-07-12 05:36:59,060 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=65.1 pTM=0.453 ipTM=0.314 tol=2.4
2024-07-12 05:37:52,464 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=65.4 pTM=0.46 ipTM=0.327 tol=1.76
2024-07-12 05:38:45,856 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=65.3 pTM=0.464 ipTM=0.328 tol=2.25
2024-07-12 05:39:39,275 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=65.4 pTM=0.465 ipTM=0.334 tol=1.34
2024-07-12 05:40:32,664 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=65.1 pTM=0.467 ipTM=0.345 tol=2.08
2024-07-12 05:41:26,044 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=65.4 pTM=0.466 ipTM=0.342 tol=1.76
2024-07-12 05:42:19,432 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=65.2 pTM=0.469 ipTM=0.341 tol=1.95
2024-07-12 05:43:12,805 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=65.3 pTM=0.477 ipTM=0.354 tol=1.62
2024-07-12 05:44:06,191 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=65.6 pTM=0.479 ipTM=0.359 tol=1.7
2024-07-12 05:44:59,536 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=65.9 pTM=0.477 ipTM=0.36 tol=2.12
2024-07-12 05:45:52,924 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=65.7 pTM=0.48 ipTM=0.363 tol=2.79
2024-07-12 05:46:46,290 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=65.8 pTM=0.485 ipTM=0.37 tol=2.69
2024-07-12 05:47:39,642 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=65.9 pTM=0.49 ipTM=0.384 tol=2.66
2024-07-12 05:47:39,644 alphafold2_multimer_v3_model_4_seed_000 took 1656.5s (30 recycles)
2024-07-12 05:48:34,424 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=63.8 pTM=0.42 ipTM=0.194
2024-07-12 05:49:27,942 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=64.4 pTM=0.417 ipTM=0.176 tol=7.81
2024-07-12 05:50:21,463 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=64.4 pTM=0.417 ipTM=0.177 tol=5.32
2024-07-12 05:51:15,034 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=65 pTM=0.415 ipTM=0.173 tol=3.22
2024-07-12 05:52:08,598 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=65 pTM=0.415 ipTM=0.174 tol=3.59
2024-07-12 05:53:02,135 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=64.9 pTM=0.416 ipTM=0.176 tol=4.45
2024-07-12 05:53:55,711 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=65 pTM=0.413 ipTM=0.174 tol=2.31
2024-07-12 05:54:49,284 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=65 pTM=0.415 ipTM=0.174 tol=2.71
2024-07-12 05:55:42,889 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=64.9 pTM=0.413 ipTM=0.172 tol=4.09
2024-07-12 05:56:36,472 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=64.8 pTM=0.411 ipTM=0.172 tol=3.36
2024-07-12 05:57:30,071 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=64.9 pTM=0.409 ipTM=0.171 tol=5.34
2024-07-12 05:58:23,654 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=64.8 pTM=0.41 ipTM=0.173 tol=4.87
2024-07-12 05:59:17,203 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=64.9 pTM=0.413 ipTM=0.173 tol=3.75
2024-07-12 06:00:10,739 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=64.9 pTM=0.414 ipTM=0.174 tol=5.37
2024-07-12 06:01:04,268 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=65 pTM=0.414 ipTM=0.174 tol=4.02
2024-07-12 06:01:57,794 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=64.9 pTM=0.411 ipTM=0.173 tol=3.74
2024-07-12 06:02:51,305 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=64.8 pTM=0.413 ipTM=0.175 tol=2.24
2024-07-12 06:03:44,803 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=65 pTM=0.415 ipTM=0.174 tol=2.28
2024-07-12 06:04:38,340 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=64.9 pTM=0.416 ipTM=0.175 tol=2.12
2024-07-12 06:05:31,860 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=65.1 pTM=0.417 ipTM=0.174 tol=4.47
2024-07-12 06:06:25,387 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=64.8 pTM=0.415 ipTM=0.174 tol=4.66
2024-07-12 06:07:18,924 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=64.8 pTM=0.413 ipTM=0.172 tol=2.48
2024-07-12 06:08:12,459 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=64.8 pTM=0.415 ipTM=0.176 tol=4.76
2024-07-12 06:09:05,992 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=64.6 pTM=0.415 ipTM=0.175 tol=2.45
2024-07-12 06:09:59,526 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=64.6 pTM=0.414 ipTM=0.176 tol=3.06
2024-07-12 06:10:53,033 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=64.7 pTM=0.414 ipTM=0.175 tol=3.87
2024-07-12 06:11:46,531 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=64.7 pTM=0.415 ipTM=0.176 tol=2.8
2024-07-12 06:12:40,029 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=64.8 pTM=0.414 ipTM=0.173 tol=3.17
2024-07-12 06:13:33,534 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=64.8 pTM=0.415 ipTM=0.176 tol=2.4
2024-07-12 06:14:27,036 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=64.7 pTM=0.414 ipTM=0.175 tol=2.03
2024-07-12 06:15:20,565 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=64.6 pTM=0.412 ipTM=0.176 tol=4.08
2024-07-12 06:15:20,566 alphafold2_multimer_v3_model_5_seed_000 took 1659.7s (30 recycles)
2024-07-12 06:15:21,767 reranking models by 'multimer' metric
2024-07-12 06:15:45,438 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 06:18:27,583 Relaxation took 185.8s
2024-07-12 06:18:27,584 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=66.4 pTM=0.476 ipTM=0.399
2024-07-12 06:20:17,051 Relaxation took 109.5s
2024-07-12 06:20:17,051 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=65.9 pTM=0.49 ipTM=0.384
2024-07-12 06:22:29,055 Relaxation took 132.0s
2024-07-12 06:22:29,056 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=65.4 pTM=0.433 ipTM=0.204
2024-07-12 06:24:47,349 Relaxation took 138.3s
2024-07-12 06:24:47,349 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=64.6 pTM=0.412 ipTM=0.176
2024-07-12 06:26:53,787 Relaxation took 126.4s
2024-07-12 06:26:53,787 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=65.2 pTM=0.401 ipTM=0.164
2024-07-12 06:27:00,588 Done