2024-07-12 04:45:32,025 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 04:45:32,363 Running on GPU
2024-07-12 04:45:40,716 Found 6 citations for tools or databases
2024-07-12 04:45:40,716 Query 1/1: PAQR5_PGBD5 (length 854)
2024-07-12 04:45:41,248 Sleeping for 10s. Reason: PENDING
2024-07-12 04:45:51,664 Sleeping for 10s. Reason: RUNNING
2024-07-12 04:46:02,083 Sleeping for 6s. Reason: RUNNING
2024-07-12 04:46:08,527 Sleeping for 10s. Reason: RUNNING
2024-07-12 04:46:18,957 Sleeping for 6s. Reason: RUNNING
2024-07-12 04:46:25,381 Sleeping for 8s. Reason: RUNNING
2024-07-12 04:46:33,791 Sleeping for 10s. Reason: RUNNING
2024-07-12 04:46:44,222 Sleeping for 10s. Reason: RUNNING
2024-07-12 04:46:56,080 Sleeping for 5s. Reason: PENDING
2024-07-12 04:47:01,488 Sleeping for 9s. Reason: RUNNING
2024-07-12 04:47:10,935 Sleeping for 7s. Reason: RUNNING
2024-07-12 04:47:18,365 Sleeping for 8s. Reason: RUNNING
2024-07-12 04:47:28,668 Setting max_seq=508, max_extra_seq=2048
2024-07-12 04:50:33,088 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.8 pTM=0.553 ipTM=0.152
2024-07-12 04:50:48,102 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.1 pTM=0.552 ipTM=0.141 tol=4.11
2024-07-12 04:51:03,156 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=79.1 pTM=0.542 ipTM=0.141 tol=1.48
2024-07-12 04:51:18,248 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=79.6 pTM=0.548 ipTM=0.141 tol=1.12
2024-07-12 04:51:33,351 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=79.2 pTM=0.55 ipTM=0.157 tol=1.42
2024-07-12 04:51:48,476 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=79.4 pTM=0.553 ipTM=0.165 tol=0.907
2024-07-12 04:52:03,618 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=79.2 pTM=0.553 ipTM=0.167 tol=0.761
2024-07-12 04:52:18,777 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=79.2 pTM=0.553 ipTM=0.171 tol=0.542
2024-07-12 04:52:33,950 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=79.2 pTM=0.557 ipTM=0.173 tol=0.873
2024-07-12 04:52:49,134 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=79.4 pTM=0.558 ipTM=0.177 tol=0.668
2024-07-12 04:53:04,326 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=79.3 pTM=0.558 ipTM=0.175 tol=0.878
2024-07-12 04:53:19,530 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=79.5 pTM=0.564 ipTM=0.19 tol=1.04
2024-07-12 04:53:34,733 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=79.4 pTM=0.563 ipTM=0.187 tol=1.06
2024-07-12 04:53:49,936 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=79.4 pTM=0.562 ipTM=0.185 tol=1.06
2024-07-12 04:54:05,134 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=79.2 pTM=0.562 ipTM=0.182 tol=0.591
2024-07-12 04:54:20,346 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=79.4 pTM=0.563 ipTM=0.187 tol=0.871
2024-07-12 04:54:35,552 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=79.3 pTM=0.564 ipTM=0.191 tol=0.945
2024-07-12 04:54:50,761 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=79.4 pTM=0.564 ipTM=0.192 tol=0.979
2024-07-12 04:55:05,982 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=79.4 pTM=0.561 ipTM=0.182 tol=1.08
2024-07-12 04:55:21,199 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=79.2 pTM=0.563 ipTM=0.189 tol=0.873
2024-07-12 04:55:36,400 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=79.1 pTM=0.56 ipTM=0.182 tol=0.579
2024-07-12 04:55:51,600 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=79.1 pTM=0.561 ipTM=0.187 tol=0.685
2024-07-12 04:56:06,809 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=79.1 pTM=0.559 ipTM=0.179 tol=0.554
2024-07-12 04:56:22,020 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=79.2 pTM=0.558 ipTM=0.178 tol=0.652
2024-07-12 04:56:37,233 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=79.2 pTM=0.56 ipTM=0.181 tol=0.749
2024-07-12 04:56:52,459 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=79.2 pTM=0.562 ipTM=0.189 tol=0.415
2024-07-12 04:56:52,460 alphafold2_multimer_v3_model_1_seed_000 took 535.3s (25 recycles)
2024-07-12 04:57:08,161 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77 pTM=0.564 ipTM=0.201
2024-07-12 04:57:23,426 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=79.9 pTM=0.579 ipTM=0.206 tol=3.73
2024-07-12 04:57:38,689 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.9 pTM=0.576 ipTM=0.206 tol=1.76
2024-07-12 04:57:53,941 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=80 pTM=0.572 ipTM=0.198 tol=0.968
2024-07-12 04:58:09,178 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.6 pTM=0.567 ipTM=0.198 tol=0.625
2024-07-12 04:58:24,418 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=79.8 pTM=0.571 ipTM=0.204 tol=0.972
2024-07-12 04:58:39,683 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=79.9 pTM=0.572 ipTM=0.21 tol=1.07
2024-07-12 04:58:54,913 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=79.8 pTM=0.572 ipTM=0.212 tol=0.878
2024-07-12 04:59:10,157 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=79.8 pTM=0.572 ipTM=0.206 tol=1.21
2024-07-12 04:59:25,398 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=79.8 pTM=0.57 ipTM=0.203 tol=0.852
2024-07-12 04:59:40,643 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=80 pTM=0.576 ipTM=0.216 tol=1.22
2024-07-12 04:59:55,893 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=80.1 pTM=0.578 ipTM=0.223 tol=1.36
2024-07-12 05:00:11,153 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=80.1 pTM=0.577 ipTM=0.219 tol=0.798
2024-07-12 05:00:26,401 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=80.1 pTM=0.583 ipTM=0.23 tol=1.18
2024-07-12 05:00:41,642 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=80 pTM=0.58 ipTM=0.228 tol=0.685
2024-07-12 05:00:56,889 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=79.9 pTM=0.573 ipTM=0.212 tol=1.64
2024-07-12 05:01:12,133 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=80 pTM=0.57 ipTM=0.206 tol=1.26
2024-07-12 05:01:27,371 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=79.7 pTM=0.57 ipTM=0.206 tol=0.818
2024-07-12 05:01:42,600 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=79.8 pTM=0.57 ipTM=0.204 tol=0.576
2024-07-12 05:01:57,845 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=79.8 pTM=0.572 ipTM=0.207 tol=0.67
2024-07-12 05:02:13,079 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=79.6 pTM=0.571 ipTM=0.205 tol=0.354
2024-07-12 05:02:13,080 alphafold2_multimer_v3_model_2_seed_000 took 320.2s (20 recycles)
2024-07-12 05:02:28,805 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.9 pTM=0.568 ipTM=0.221
2024-07-12 05:02:44,040 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=79 pTM=0.568 ipTM=0.2 tol=4.28
2024-07-12 05:02:59,270 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.9 pTM=0.571 ipTM=0.218 tol=1.75
2024-07-12 05:03:14,497 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.7 pTM=0.566 ipTM=0.21 tol=1.21
2024-07-12 05:03:29,720 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=79 pTM=0.571 ipTM=0.216 tol=1.59
2024-07-12 05:03:44,954 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79.3 pTM=0.578 ipTM=0.229 tol=0.925
2024-07-12 05:04:00,195 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.6 pTM=0.579 ipTM=0.229 tol=0.875
2024-07-12 05:04:15,436 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=79.6 pTM=0.578 ipTM=0.229 tol=0.689
2024-07-12 05:04:30,673 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=79.5 pTM=0.581 ipTM=0.235 tol=0.727
2024-07-12 05:04:45,909 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=79.6 pTM=0.582 ipTM=0.232 tol=0.764
2024-07-12 05:05:01,156 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=79.5 pTM=0.581 ipTM=0.232 tol=0.593
2024-07-12 05:05:16,400 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=79.6 pTM=0.583 ipTM=0.236 tol=0.455
2024-07-12 05:05:16,401 alphafold2_multimer_v3_model_3_seed_000 took 182.9s (11 recycles)
2024-07-12 05:05:32,155 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.9 pTM=0.587 ipTM=0.243
2024-07-12 05:05:47,470 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=79.5 pTM=0.575 ipTM=0.191 tol=5.34
2024-07-12 05:06:02,750 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.573 ipTM=0.216 tol=2.68
2024-07-12 05:06:18,024 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=79.1 pTM=0.569 ipTM=0.196 tol=2.76
2024-07-12 05:06:33,289 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.9 pTM=0.574 ipTM=0.21 tol=1.45
2024-07-12 05:06:48,571 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=79.5 pTM=0.583 ipTM=0.226 tol=1.59
2024-07-12 05:07:03,862 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.2 pTM=0.577 ipTM=0.218 tol=1.24
2024-07-12 05:07:19,147 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.3 pTM=0.577 ipTM=0.213 tol=1.65
2024-07-12 05:07:34,460 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.3 pTM=0.582 ipTM=0.219 tol=1.16
2024-07-12 05:07:49,752 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.2 pTM=0.582 ipTM=0.221 tol=1.53
2024-07-12 05:08:05,036 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.2 pTM=0.579 ipTM=0.217 tol=1.53
2024-07-12 05:08:20,324 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.2 pTM=0.581 ipTM=0.22 tol=1.94
2024-07-12 05:08:35,627 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.3 pTM=0.581 ipTM=0.217 tol=2.01
2024-07-12 05:08:50,914 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.5 pTM=0.585 ipTM=0.224 tol=2.3
2024-07-12 05:09:06,216 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.2 pTM=0.582 ipTM=0.221 tol=2.48
2024-07-12 05:09:21,499 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.4 pTM=0.583 ipTM=0.219 tol=2.31
2024-07-12 05:09:36,798 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.2 pTM=0.581 ipTM=0.215 tol=2.37
2024-07-12 05:09:52,103 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.2 pTM=0.58 ipTM=0.207 tol=2.54
2024-07-12 05:10:07,426 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.6 pTM=0.581 ipTM=0.209 tol=2.28
2024-07-12 05:10:22,708 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.4 pTM=0.582 ipTM=0.208 tol=2.36
2024-07-12 05:10:37,989 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79.1 pTM=0.58 ipTM=0.212 tol=2.42
2024-07-12 05:10:53,292 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=79.1 pTM=0.579 ipTM=0.207 tol=2.3
2024-07-12 05:11:08,591 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=79.2 pTM=0.58 ipTM=0.213 tol=2.45
2024-07-12 05:11:23,885 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=79.4 pTM=0.583 ipTM=0.211 tol=2.4
2024-07-12 05:11:39,153 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=79.2 pTM=0.582 ipTM=0.216 tol=2.17
2024-07-12 05:11:54,455 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=79.5 pTM=0.582 ipTM=0.211 tol=2.18
2024-07-12 05:12:09,730 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79.4 pTM=0.581 ipTM=0.216 tol=2.36
2024-07-12 05:12:25,007 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=79.3 pTM=0.581 ipTM=0.205 tol=2.09
2024-07-12 05:12:40,283 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=79.2 pTM=0.582 ipTM=0.217 tol=2.35
2024-07-12 05:12:55,554 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=79.2 pTM=0.582 ipTM=0.213 tol=2.34
2024-07-12 05:13:10,831 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=79.2 pTM=0.583 ipTM=0.22 tol=2.24
2024-07-12 05:13:10,832 alphafold2_multimer_v3_model_4_seed_000 took 474.0s (30 recycles)
2024-07-12 05:13:26,567 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.9 pTM=0.598 ipTM=0.28
2024-07-12 05:13:41,888 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.2 pTM=0.583 ipTM=0.22 tol=5.73
2024-07-12 05:13:57,188 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=78.8 pTM=0.579 ipTM=0.235 tol=3.56
2024-07-12 05:14:12,466 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=78.8 pTM=0.583 ipTM=0.231 tol=1.5
2024-07-12 05:14:27,750 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=78.9 pTM=0.58 ipTM=0.224 tol=1.53
2024-07-12 05:14:43,024 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=78.8 pTM=0.581 ipTM=0.227 tol=1.06
2024-07-12 05:14:58,312 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.8 pTM=0.581 ipTM=0.23 tol=1.76
2024-07-12 05:15:13,592 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=79 pTM=0.58 ipTM=0.222 tol=0.931
2024-07-12 05:15:28,904 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.8 pTM=0.584 ipTM=0.233 tol=0.693
2024-07-12 05:15:44,182 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.9 pTM=0.582 ipTM=0.228 tol=0.67
2024-07-12 05:15:59,483 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.7 pTM=0.585 ipTM=0.242 tol=0.773
2024-07-12 05:16:14,780 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.9 pTM=0.59 ipTM=0.24 tol=0.5
2024-07-12 05:16:30,062 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=78.9 pTM=0.593 ipTM=0.26 tol=0.597
2024-07-12 05:16:45,323 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=78.9 pTM=0.587 ipTM=0.238 tol=0.764
2024-07-12 05:17:00,580 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=78.8 pTM=0.592 ipTM=0.259 tol=0.815
2024-07-12 05:17:15,834 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=78.9 pTM=0.587 ipTM=0.242 tol=0.702
2024-07-12 05:17:31,107 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=79 pTM=0.586 ipTM=0.252 tol=0.755
2024-07-12 05:17:46,366 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=78.8 pTM=0.589 ipTM=0.245 tol=0.911
2024-07-12 05:18:01,615 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=78.9 pTM=0.585 ipTM=0.237 tol=1.28
2024-07-12 05:18:16,873 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=79 pTM=0.586 ipTM=0.241 tol=0.872
2024-07-12 05:18:32,126 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=79.2 pTM=0.596 ipTM=0.254 tol=0.801
2024-07-12 05:18:47,384 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=79.2 pTM=0.59 ipTM=0.244 tol=0.862
2024-07-12 05:19:02,642 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=79.3 pTM=0.591 ipTM=0.248 tol=0.791
2024-07-12 05:19:17,912 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=79.5 pTM=0.591 ipTM=0.244 tol=0.521
2024-07-12 05:19:33,163 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=79.4 pTM=0.604 ipTM=0.273 tol=0.414
2024-07-12 05:19:33,163 alphafold2_multimer_v3_model_5_seed_000 took 381.9s (24 recycles)
2024-07-12 05:19:35,980 reranking models by 'multimer' metric
2024-07-12 05:19:37,253 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 05:20:28,217 Relaxation took 52.2s
2024-07-12 05:20:28,217 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=79.4 pTM=0.604 ipTM=0.273
2024-07-12 05:21:10,787 Relaxation took 42.6s
2024-07-12 05:21:10,787 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.6 pTM=0.583 ipTM=0.236
2024-07-12 05:22:37,133 Relaxation took 86.3s
2024-07-12 05:22:37,133 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=79.2 pTM=0.583 ipTM=0.22
2024-07-12 05:23:15,813 Relaxation took 38.7s
2024-07-12 05:23:15,813 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.6 pTM=0.571 ipTM=0.205
2024-07-12 05:23:38,716 Relaxation took 22.9s
2024-07-12 05:23:38,716 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=79.2 pTM=0.562 ipTM=0.189
2024-07-12 05:23:44,376 Done