2024-07-12 05:28:56,227 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 05:28:56,556 Running on GPU
2024-07-12 05:29:09,540 Found 6 citations for tools or databases
2024-07-12 05:29:09,540 Query 1/1: PCP4_PSB9 (length 281)
2024-07-12 05:29:09,980 Sleeping for 10s. Reason: PENDING
2024-07-12 05:29:20,405 Sleeping for 7s. Reason: RUNNING
2024-07-12 05:29:27,822 Sleeping for 9s. Reason: RUNNING
2024-07-12 05:29:37,243 Sleeping for 5s. Reason: RUNNING
2024-07-12 05:29:44,137 Sleeping for 9s. Reason: PENDING
2024-07-12 05:29:53,562 Sleeping for 10s. Reason: RUNNING
2024-07-12 05:30:05,343 Setting max_seq=508, max_extra_seq=2048
2024-07-12 05:33:53,423 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=68.8 pTM=0.691 ipTM=0.206
2024-07-12 05:33:55,955 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=71.4 pTM=0.711 ipTM=0.181 tol=3.08
2024-07-12 05:33:58,494 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=72.2 pTM=0.714 ipTM=0.169 tol=1.42
2024-07-12 05:34:01,033 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=73.4 pTM=0.721 ipTM=0.192 tol=1.89
2024-07-12 05:34:03,573 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.4 pTM=0.72 ipTM=0.176 tol=1.9
2024-07-12 05:34:06,113 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.2 pTM=0.729 ipTM=0.196 tol=1.18
2024-07-12 05:34:08,655 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=73.6 pTM=0.719 ipTM=0.171 tol=1.42
2024-07-12 05:34:11,193 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=73.1 pTM=0.719 ipTM=0.182 tol=0.68
2024-07-12 05:34:13,730 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=72.1 pTM=0.706 ipTM=0.143 tol=1.57
2024-07-12 05:34:16,267 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=73.4 pTM=0.717 ipTM=0.149 tol=2.81
2024-07-12 05:34:18,805 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=72.9 pTM=0.711 ipTM=0.141 tol=2.6
2024-07-12 05:34:21,349 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=74 pTM=0.72 ipTM=0.166 tol=1.5
2024-07-12 05:34:23,893 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=73.6 pTM=0.712 ipTM=0.135 tol=3.23
2024-07-12 05:34:26,440 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=74 pTM=0.719 ipTM=0.151 tol=2.73
2024-07-12 05:34:28,981 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=73.9 pTM=0.719 ipTM=0.162 tol=1.94
2024-07-12 05:34:31,522 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=73.9 pTM=0.718 ipTM=0.16 tol=1.42
2024-07-12 05:34:34,064 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=73.9 pTM=0.716 ipTM=0.152 tol=1.48
2024-07-12 05:34:36,605 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=73.9 pTM=0.717 ipTM=0.158 tol=1.53
2024-07-12 05:34:39,147 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=73.8 pTM=0.718 ipTM=0.158 tol=1.46
2024-07-12 05:34:41,689 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=73.5 pTM=0.712 ipTM=0.146 tol=1.6
2024-07-12 05:34:44,229 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=73.3 pTM=0.711 ipTM=0.138 tol=1.27
2024-07-12 05:34:46,769 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=73.5 pTM=0.714 ipTM=0.155 tol=1.82
2024-07-12 05:34:49,310 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=73.8 pTM=0.716 ipTM=0.155 tol=2.44
2024-07-12 05:34:51,852 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=73.5 pTM=0.711 ipTM=0.131 tol=5.87
2024-07-12 05:34:54,387 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=73.4 pTM=0.712 ipTM=0.152 tol=5.34
2024-07-12 05:34:56,928 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=73.1 pTM=0.709 ipTM=0.119 tol=3.01
2024-07-12 05:34:59,471 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=73.4 pTM=0.712 ipTM=0.13 tol=2.14
2024-07-12 05:35:02,012 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=73.4 pTM=0.716 ipTM=0.16 tol=2.13
2024-07-12 05:35:04,553 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=73.6 pTM=0.716 ipTM=0.153 tol=0.79
2024-07-12 05:35:07,095 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=73.7 pTM=0.715 ipTM=0.159 tol=1.5
2024-07-12 05:35:09,634 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=74 pTM=0.719 ipTM=0.163 tol=1.15
2024-07-12 05:35:09,634 alphafold2_multimer_v3_model_1_seed_000 took 242.9s (30 recycles)
2024-07-12 05:35:12,226 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=68 pTM=0.684 ipTM=0.125
2024-07-12 05:35:14,756 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=70.3 pTM=0.696 ipTM=0.13 tol=3.71
2024-07-12 05:35:17,284 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=72.5 pTM=0.712 ipTM=0.167 tol=2.39
2024-07-12 05:35:19,808 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.9 pTM=0.714 ipTM=0.185 tol=1.11
2024-07-12 05:35:22,331 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73.7 pTM=0.721 ipTM=0.21 tol=0.892
2024-07-12 05:35:24,854 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.3 pTM=0.718 ipTM=0.197 tol=0.618
2024-07-12 05:35:27,383 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.4 pTM=0.726 ipTM=0.211 tol=0.435
2024-07-12 05:35:27,383 alphafold2_multimer_v3_model_2_seed_000 took 17.7s (6 recycles)
2024-07-12 05:35:29,944 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=65.8 pTM=0.663 ipTM=0.186
2024-07-12 05:35:32,452 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=64.6 pTM=0.661 ipTM=0.22 tol=3.23
2024-07-12 05:35:34,952 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=65.2 pTM=0.669 ipTM=0.216 tol=2.01
2024-07-12 05:35:37,465 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=65.6 pTM=0.675 ipTM=0.222 tol=1.69
2024-07-12 05:35:39,968 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=66.6 pTM=0.68 ipTM=0.26 tol=2.39
2024-07-12 05:35:42,480 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=66.7 pTM=0.678 ipTM=0.228 tol=1.76
2024-07-12 05:35:44,986 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=67.6 pTM=0.689 ipTM=0.274 tol=0.777
2024-07-12 05:35:47,496 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=66.3 pTM=0.676 ipTM=0.245 tol=1.44
2024-07-12 05:35:49,996 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=66.2 pTM=0.677 ipTM=0.243 tol=1.36
2024-07-12 05:35:52,503 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=66.2 pTM=0.676 ipTM=0.235 tol=0.608
2024-07-12 05:35:55,004 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=66.6 pTM=0.68 ipTM=0.243 tol=1.12
2024-07-12 05:35:57,515 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=66.6 pTM=0.678 ipTM=0.233 tol=0.998
2024-07-12 05:36:00,020 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=67.1 pTM=0.685 ipTM=0.253 tol=0.704
2024-07-12 05:36:02,530 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=65.9 pTM=0.674 ipTM=0.213 tol=1.08
2024-07-12 05:36:05,036 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=67.3 pTM=0.688 ipTM=0.26 tol=0.853
2024-07-12 05:36:07,550 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=67.1 pTM=0.686 ipTM=0.248 tol=0.628
2024-07-12 05:36:10,057 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=68.1 pTM=0.695 ipTM=0.287 tol=0.469
2024-07-12 05:36:10,058 alphafold2_multimer_v3_model_3_seed_000 took 42.6s (16 recycles)
2024-07-12 05:36:12,624 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=63.6 pTM=0.652 ipTM=0.178
2024-07-12 05:36:15,138 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=65.4 pTM=0.667 ipTM=0.143 tol=6.26
2024-07-12 05:36:17,646 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=64.4 pTM=0.661 ipTM=0.128 tol=3.66
2024-07-12 05:36:20,153 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=64.6 pTM=0.66 ipTM=0.125 tol=2.36
2024-07-12 05:36:22,666 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=64.8 pTM=0.659 ipTM=0.116 tol=2.19
2024-07-12 05:36:25,175 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=65.1 pTM=0.665 ipTM=0.139 tol=2.15
2024-07-12 05:36:27,684 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=66.6 pTM=0.676 ipTM=0.169 tol=1.04
2024-07-12 05:36:30,195 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=67.8 pTM=0.688 ipTM=0.208 tol=1.02
2024-07-12 05:36:32,707 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=67.7 pTM=0.689 ipTM=0.203 tol=0.64
2024-07-12 05:36:35,217 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=67.3 pTM=0.683 ipTM=0.191 tol=0.638
2024-07-12 05:36:37,729 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=68.1 pTM=0.69 ipTM=0.198 tol=0.454
2024-07-12 05:36:37,730 alphafold2_multimer_v3_model_4_seed_000 took 27.6s (10 recycles)
2024-07-12 05:36:40,295 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=64.5 pTM=0.663 ipTM=0.177
2024-07-12 05:36:42,805 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=63 pTM=0.653 ipTM=0.123 tol=7.67
2024-07-12 05:36:45,303 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=62.7 pTM=0.653 ipTM=0.153 tol=7
2024-07-12 05:36:47,816 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=62.8 pTM=0.655 ipTM=0.136 tol=2.28
2024-07-12 05:36:50,318 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=63.3 pTM=0.659 ipTM=0.159 tol=3.59
2024-07-12 05:36:52,832 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=63.6 pTM=0.664 ipTM=0.164 tol=1.1
2024-07-12 05:36:55,339 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=63.6 pTM=0.661 ipTM=0.176 tol=1.26
2024-07-12 05:36:57,854 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=63.6 pTM=0.661 ipTM=0.173 tol=0.908
2024-07-12 05:37:00,362 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=64.4 pTM=0.667 ipTM=0.189 tol=1.14
2024-07-12 05:37:02,878 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=63.9 pTM=0.663 ipTM=0.182 tol=1.24
2024-07-12 05:37:05,387 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=64.1 pTM=0.665 ipTM=0.199 tol=0.659
2024-07-12 05:37:07,907 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=63.7 pTM=0.66 ipTM=0.158 tol=1.58
2024-07-12 05:37:10,417 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=64.6 pTM=0.669 ipTM=0.197 tol=0.805
2024-07-12 05:37:12,934 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=63.6 pTM=0.663 ipTM=0.167 tol=1.26
2024-07-12 05:37:15,443 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=63.7 pTM=0.663 ipTM=0.176 tol=0.637
2024-07-12 05:37:17,963 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=64.4 pTM=0.665 ipTM=0.156 tol=0.96
2024-07-12 05:37:20,472 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=64.5 pTM=0.667 ipTM=0.176 tol=1.11
2024-07-12 05:37:22,990 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=63.2 pTM=0.657 ipTM=0.155 tol=1.4
2024-07-12 05:37:25,499 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=64.2 pTM=0.665 ipTM=0.198 tol=1.67
2024-07-12 05:37:28,012 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=62.8 pTM=0.653 ipTM=0.151 tol=1.62
2024-07-12 05:37:30,522 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=64.2 pTM=0.667 ipTM=0.181 tol=1.47
2024-07-12 05:37:33,039 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=63.5 pTM=0.66 ipTM=0.164 tol=1.07
2024-07-12 05:37:35,549 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=64.2 pTM=0.667 ipTM=0.195 tol=0.824
2024-07-12 05:37:38,066 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=63.4 pTM=0.659 ipTM=0.165 tol=1.73
2024-07-12 05:37:40,576 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=64.2 pTM=0.667 ipTM=0.177 tol=0.709
2024-07-12 05:37:43,093 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=64 pTM=0.664 ipTM=0.178 tol=1.49
2024-07-12 05:37:45,602 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=64.1 pTM=0.664 ipTM=0.186 tol=1.48
2024-07-12 05:37:48,119 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=63.4 pTM=0.658 ipTM=0.179 tol=1.15
2024-07-12 05:37:50,625 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=64 pTM=0.666 ipTM=0.179 tol=1.4
2024-07-12 05:37:53,143 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=63.8 pTM=0.662 ipTM=0.178 tol=0.917
2024-07-12 05:37:55,655 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=64.9 pTM=0.67 ipTM=0.194 tol=1.07
2024-07-12 05:37:55,655 alphafold2_multimer_v3_model_5_seed_000 took 77.9s (30 recycles)
2024-07-12 05:37:57,670 reranking models by 'multimer' metric
2024-07-12 05:38:17,119 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 05:38:34,481 Relaxation took 36.8s
2024-07-12 05:38:34,481 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=68.1 pTM=0.695 ipTM=0.287
2024-07-12 05:38:39,835 Relaxation took 5.4s
2024-07-12 05:38:39,835 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.4 pTM=0.726 ipTM=0.211
2024-07-12 05:38:46,256 Relaxation took 6.4s
2024-07-12 05:38:46,256 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=68.1 pTM=0.69 ipTM=0.198
2024-07-12 05:38:52,222 Relaxation took 6.0s
2024-07-12 05:38:52,222 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=64.9 pTM=0.67 ipTM=0.194
2024-07-12 05:38:57,142 Relaxation took 4.9s
2024-07-12 05:38:57,142 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74 pTM=0.719 ipTM=0.163
2024-07-12 05:38:57,977 Done