2024-07-12 05:40:42,105 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 05:40:42,435 Running on GPU
2024-07-12 05:40:59,739 Found 6 citations for tools or databases
2024-07-12 05:40:59,739 Query 1/1: PCSK5_S1A7A (length 1961)
2024-07-12 05:41:00,275 Sleeping for 7s. Reason: PENDING
2024-07-12 05:41:07,714 Sleeping for 6s. Reason: RUNNING
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2024-07-12 05:44:05,919 Sleeping for 10s. Reason: RUNNING
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2024-07-12 05:44:23,765 Sleeping for 9s. Reason: RUNNING
2024-07-12 05:44:33,202 Sleeping for 10s. Reason: RUNNING
2024-07-12 05:44:46,863 Sleeping for 8s. Reason: PENDING
2024-07-12 05:44:55,293 Sleeping for 8s. Reason: RUNNING
2024-07-12 05:45:03,727 Sleeping for 5s. Reason: RUNNING
2024-07-12 05:45:09,159 Sleeping for 10s. Reason: RUNNING
2024-07-12 05:45:19,584 Sleeping for 8s. Reason: RUNNING
2024-07-12 05:45:27,997 Sleeping for 10s. Reason: RUNNING
2024-07-12 05:45:38,414 Sleeping for 5s. Reason: RUNNING
2024-07-12 05:45:43,891 Sleeping for 9s. Reason: RUNNING
2024-07-12 05:45:53,325 Sleeping for 10s. Reason: RUNNING
2024-07-12 05:46:03,748 Sleeping for 6s. Reason: RUNNING
2024-07-12 05:46:10,174 Sleeping for 8s. Reason: RUNNING
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2024-07-12 05:46:27,000 Sleeping for 5s. Reason: RUNNING
2024-07-12 05:46:32,456 Sleeping for 5s. Reason: RUNNING
2024-07-12 05:46:37,889 Sleeping for 6s. Reason: RUNNING
2024-07-12 05:46:44,311 Sleeping for 10s. Reason: RUNNING
2024-07-12 05:46:54,757 Sleeping for 9s. Reason: RUNNING
2024-07-12 05:47:10,658 Setting max_seq=508, max_extra_seq=2048
2024-07-12 05:53:41,567 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=65.8 pTM=0.388 ipTM=0.219
2024-07-12 05:56:13,531 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=68.5 pTM=0.409 ipTM=0.249 tol=15
2024-07-12 05:58:45,562 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.6 pTM=0.403 ipTM=0.244 tol=7.69
2024-07-12 06:01:17,489 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.2 pTM=0.402 ipTM=0.238 tol=6.02
2024-07-12 06:03:49,388 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.1 pTM=0.4 ipTM=0.24 tol=5.95
2024-07-12 06:06:21,349 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.5 pTM=0.4 ipTM=0.244 tol=6.17
2024-07-12 06:08:53,318 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=69.8 pTM=0.4 ipTM=0.239 tol=6.67
2024-07-12 06:11:25,237 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=69.7 pTM=0.399 ipTM=0.243 tol=5.88
2024-07-12 06:13:57,113 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=69.8 pTM=0.399 ipTM=0.241 tol=5.33
2024-07-12 06:16:29,036 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=69.4 pTM=0.398 ipTM=0.238 tol=5.21
2024-07-12 06:19:00,988 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=69.5 pTM=0.398 ipTM=0.239 tol=5.64
2024-07-12 06:21:32,930 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=69.4 pTM=0.398 ipTM=0.236 tol=5.77
2024-07-12 06:24:04,899 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=69.6 pTM=0.398 ipTM=0.24 tol=6.23
2024-07-12 06:26:36,863 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=69.6 pTM=0.398 ipTM=0.237 tol=6.45
2024-07-12 06:29:08,782 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=69.9 pTM=0.397 ipTM=0.236 tol=6.29
2024-07-12 06:31:40,688 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=69.8 pTM=0.397 ipTM=0.235 tol=5.65
2024-07-12 06:34:12,625 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=70.2 pTM=0.398 ipTM=0.236 tol=7.42
2024-07-12 06:36:44,582 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=70.2 pTM=0.397 ipTM=0.236 tol=6.98
2024-07-12 06:39:16,486 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=70.2 pTM=0.398 ipTM=0.238 tol=6.94
2024-07-12 06:41:48,397 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=70.2 pTM=0.397 ipTM=0.238 tol=6.5
2024-07-12 06:44:20,365 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=70.7 pTM=0.397 ipTM=0.235 tol=6.52
2024-07-12 06:46:52,359 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=70.2 pTM=0.397 ipTM=0.236 tol=6.84
2024-07-12 06:49:24,333 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=70.4 pTM=0.398 ipTM=0.236 tol=6.54
2024-07-12 06:51:56,300 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=69.9 pTM=0.398 ipTM=0.235 tol=6.39
2024-07-12 06:54:28,246 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=70.3 pTM=0.4 ipTM=0.236 tol=6.71
2024-07-12 06:57:00,261 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=69.8 pTM=0.397 ipTM=0.234 tol=6.33
2024-07-12 06:59:32,259 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=70.1 pTM=0.397 ipTM=0.229 tol=8.38
2024-07-12 07:02:04,245 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=70.3 pTM=0.396 ipTM=0.233 tol=6.54
2024-07-12 07:04:36,245 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=70.4 pTM=0.397 ipTM=0.24 tol=5.66
2024-07-12 07:07:08,245 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=70.6 pTM=0.396 ipTM=0.231 tol=5.12
2024-07-12 07:09:40,293 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=70.2 pTM=0.396 ipTM=0.226 tol=6.46
2024-07-12 07:09:40,295 alphafold2_multimer_v3_model_1_seed_000 took 4889.7s (30 recycles)
2024-07-12 07:12:17,406 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=65.4 pTM=0.383 ipTM=0.284
2024-07-12 07:14:49,634 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=69.6 pTM=0.407 ipTM=0.29 tol=13.4
2024-07-12 07:17:21,740 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=70.9 pTM=0.404 ipTM=0.293 tol=8.81
2024-07-12 07:19:53,766 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.2 pTM=0.402 ipTM=0.281 tol=8.45
2024-07-12 07:22:25,813 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=71.1 pTM=0.393 ipTM=0.282 tol=5.44
2024-07-12 07:24:57,819 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=71.8 pTM=0.411 ipTM=0.29 tol=5.19
2024-07-12 07:27:29,888 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.9 pTM=0.402 ipTM=0.282 tol=3.33
2024-07-12 07:30:01,919 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=72 pTM=0.404 ipTM=0.284 tol=2.2
2024-07-12 07:32:33,941 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=72.1 pTM=0.404 ipTM=0.284 tol=1.65
2024-07-12 07:35:05,958 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=72.1 pTM=0.404 ipTM=0.275 tol=1.74
2024-07-12 07:37:38,001 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=72 pTM=0.403 ipTM=0.278 tol=2.09
2024-07-12 07:40:09,950 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=71.9 pTM=0.401 ipTM=0.282 tol=1.75
2024-07-12 07:42:41,930 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=72.1 pTM=0.405 ipTM=0.28 tol=1.84
2024-07-12 07:45:13,916 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=72.2 pTM=0.403 ipTM=0.276 tol=1.78
2024-07-12 07:47:45,828 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=72.2 pTM=0.402 ipTM=0.278 tol=1.23
2024-07-12 07:50:17,697 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=71.8 pTM=0.402 ipTM=0.279 tol=1.36
2024-07-12 07:52:49,638 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=71.9 pTM=0.404 ipTM=0.279 tol=1.52
2024-07-12 07:55:21,599 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=72.2 pTM=0.404 ipTM=0.282 tol=1.51
2024-07-12 07:57:53,568 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=72.1 pTM=0.404 ipTM=0.282 tol=1.36
2024-07-12 08:00:25,511 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=72 pTM=0.404 ipTM=0.286 tol=1.32
2024-07-12 08:02:57,417 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=72.1 pTM=0.404 ipTM=0.29 tol=1.15
2024-07-12 08:05:29,337 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=72.1 pTM=0.403 ipTM=0.287 tol=1.09
2024-07-12 08:08:01,261 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=71.9 pTM=0.401 ipTM=0.284 tol=1.01
2024-07-12 08:10:33,238 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=72.1 pTM=0.406 ipTM=0.284 tol=1.23
2024-07-12 08:13:05,203 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=72.2 pTM=0.405 ipTM=0.286 tol=0.885
2024-07-12 08:15:37,127 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=71.9 pTM=0.404 ipTM=0.286 tol=0.677
2024-07-12 08:18:08,951 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=72.4 pTM=0.404 ipTM=0.287 tol=1.27
2024-07-12 08:20:40,741 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=72.2 pTM=0.402 ipTM=0.286 tol=1.35
2024-07-12 08:23:12,640 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=72.1 pTM=0.403 ipTM=0.279 tol=1.01
2024-07-12 08:25:44,568 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=72 pTM=0.403 ipTM=0.281 tol=1.05
2024-07-12 08:28:16,460 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=71.9 pTM=0.403 ipTM=0.277 tol=0.948
2024-07-12 08:28:16,462 alphafold2_multimer_v3_model_2_seed_000 took 4711.5s (30 recycles)
2024-07-12 08:30:51,305 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.5 pTM=0.379 ipTM=0.332
2024-07-12 08:33:23,614 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=68.9 pTM=0.383 ipTM=0.323 tol=17.5
2024-07-12 08:35:55,812 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.9 pTM=0.401 ipTM=0.304 tol=11.2
2024-07-12 08:38:27,829 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=69.3 pTM=0.399 ipTM=0.291 tol=8.62
2024-07-12 08:40:59,913 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=69.4 pTM=0.402 ipTM=0.292 tol=4.47
2024-07-12 08:43:32,004 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=69.6 pTM=0.403 ipTM=0.294 tol=3
2024-07-12 08:46:04,064 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=69.6 pTM=0.403 ipTM=0.289 tol=2.37
2024-07-12 08:48:36,085 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=69.6 pTM=0.406 ipTM=0.292 tol=1.54
2024-07-12 08:51:08,050 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=69.6 pTM=0.403 ipTM=0.291 tol=2.07
2024-07-12 08:53:40,042 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=70.1 pTM=0.403 ipTM=0.287 tol=1.57
2024-07-12 08:56:11,964 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=70.3 pTM=0.405 ipTM=0.285 tol=1.3
2024-07-12 08:58:43,881 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=70.3 pTM=0.404 ipTM=0.288 tol=1.46
2024-07-12 09:01:15,771 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=70.1 pTM=0.404 ipTM=0.285 tol=1.05
2024-07-12 09:03:47,673 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=70.1 pTM=0.403 ipTM=0.287 tol=1.22
2024-07-12 09:06:19,596 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=70.2 pTM=0.405 ipTM=0.289 tol=1.45
2024-07-12 09:08:51,538 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=70 pTM=0.403 ipTM=0.289 tol=1.12
2024-07-12 09:11:23,492 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=69.9 pTM=0.403 ipTM=0.281 tol=0.937
2024-07-12 09:13:55,463 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=70.1 pTM=0.403 ipTM=0.284 tol=0.794
2024-07-12 09:16:27,426 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=70.1 pTM=0.406 ipTM=0.288 tol=1.01
2024-07-12 09:18:59,416 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=70.1 pTM=0.406 ipTM=0.292 tol=0.976
2024-07-12 09:21:31,371 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=70.2 pTM=0.406 ipTM=0.288 tol=0.716
2024-07-12 09:24:03,327 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=70.4 pTM=0.405 ipTM=0.293 tol=0.628
2024-07-12 09:26:35,257 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=70.3 pTM=0.404 ipTM=0.29 tol=0.985
2024-07-12 09:29:07,150 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=70.2 pTM=0.407 ipTM=0.29 tol=0.972
2024-07-12 09:31:39,030 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=70.4 pTM=0.407 ipTM=0.292 tol=0.846
2024-07-12 09:34:10,914 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=70.2 pTM=0.405 ipTM=0.292 tol=0.81
2024-07-12 09:36:42,805 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=70.5 pTM=0.406 ipTM=0.291 tol=0.983
2024-07-12 09:39:14,696 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=70.8 pTM=0.407 ipTM=0.289 tol=1.21
2024-07-12 09:41:46,538 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=70.5 pTM=0.406 ipTM=0.29 tol=0.842
2024-07-12 09:44:18,388 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=70.5 pTM=0.406 ipTM=0.288 tol=1.08
2024-07-12 09:46:50,235 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=70.4 pTM=0.404 ipTM=0.291 tol=0.971
2024-07-12 09:46:50,237 alphafold2_multimer_v3_model_3_seed_000 took 4711.5s (30 recycles)
2024-07-12 09:49:24,961 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=64.6 pTM=0.379 ipTM=0.41
2024-07-12 09:51:57,033 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=65.8 pTM=0.398 ipTM=0.35 tol=21.7
2024-07-12 09:54:29,021 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.4 pTM=0.407 ipTM=0.345 tol=8.63
2024-07-12 09:57:00,944 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=67.2 pTM=0.4 ipTM=0.341 tol=5.63
2024-07-12 09:59:32,860 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=67.4 pTM=0.399 ipTM=0.345 tol=3.6
2024-07-12 10:02:04,743 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=67.6 pTM=0.398 ipTM=0.329 tol=2.86
2024-07-12 10:04:36,660 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=67.2 pTM=0.397 ipTM=0.33 tol=3.19
2024-07-12 10:07:08,599 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=67.2 pTM=0.4 ipTM=0.323 tol=2.38
2024-07-12 10:09:40,543 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=66.9 pTM=0.393 ipTM=0.323 tol=2.39
2024-07-12 10:12:12,516 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=66.7 pTM=0.394 ipTM=0.325 tol=2.8
2024-07-12 10:14:44,523 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=66.9 pTM=0.398 ipTM=0.323 tol=3.37
2024-07-12 10:17:16,536 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=66.4 pTM=0.391 ipTM=0.313 tol=3.96
2024-07-12 10:19:48,504 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=66.8 pTM=0.395 ipTM=0.313 tol=2.49
2024-07-12 10:22:20,484 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=66.6 pTM=0.397 ipTM=0.31 tol=3.64
2024-07-12 10:24:52,430 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=66.9 pTM=0.398 ipTM=0.309 tol=3.09
2024-07-12 10:27:24,388 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=66.6 pTM=0.388 ipTM=0.313 tol=2.76
2024-07-12 10:29:56,400 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=66.6 pTM=0.391 ipTM=0.313 tol=2.71
2024-07-12 10:32:28,370 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=66.2 pTM=0.384 ipTM=0.319 tol=2.9
2024-07-12 10:35:00,374 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=66 pTM=0.393 ipTM=0.326 tol=3.17
2024-07-12 10:37:32,291 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=66.6 pTM=0.403 ipTM=0.327 tol=3.85
2024-07-12 10:40:04,252 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=66.5 pTM=0.4 ipTM=0.33 tol=3.01
2024-07-12 10:42:36,215 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=66.9 pTM=0.396 ipTM=0.324 tol=3.12
2024-07-12 10:45:08,255 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=66.4 pTM=0.386 ipTM=0.33 tol=2.75
2024-07-12 10:47:40,264 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=66.8 pTM=0.397 ipTM=0.337 tol=2.71
2024-07-12 10:50:12,285 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=66.6 pTM=0.401 ipTM=0.329 tol=3.26
2024-07-12 10:52:44,216 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=66.4 pTM=0.395 ipTM=0.321 tol=2.23
2024-07-12 10:55:16,132 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=67 pTM=0.398 ipTM=0.324 tol=3.06
2024-07-12 10:57:48,090 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=66.9 pTM=0.383 ipTM=0.321 tol=2.53
2024-07-12 11:00:19,996 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=67.2 pTM=0.399 ipTM=0.329 tol=2.88
2024-07-12 11:02:51,907 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=66.9 pTM=0.395 ipTM=0.326 tol=2.4
2024-07-12 11:05:23,819 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=66.9 pTM=0.394 ipTM=0.324 tol=1.89
2024-07-12 11:05:23,821 alphafold2_multimer_v3_model_4_seed_000 took 4711.3s (30 recycles)
2024-07-12 11:07:58,144 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65 pTM=0.393 ipTM=0.35
2024-07-12 11:10:30,151 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=67.1 pTM=0.416 ipTM=0.342 tol=13.5
2024-07-12 11:13:02,130 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=67.4 pTM=0.414 ipTM=0.334 tol=8.07
2024-07-12 11:15:33,985 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=67.4 pTM=0.414 ipTM=0.318 tol=5.97
2024-07-12 11:18:05,752 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=68.1 pTM=0.413 ipTM=0.307 tol=5.66
2024-07-12 11:20:37,514 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=68.3 pTM=0.415 ipTM=0.308 tol=6.4
2024-07-12 11:23:09,248 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=68.7 pTM=0.414 ipTM=0.309 tol=5.05
2024-07-12 11:25:41,032 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=68.6 pTM=0.413 ipTM=0.31 tol=1.91
2024-07-12 11:28:12,790 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=68.7 pTM=0.412 ipTM=0.304 tol=2.15
2024-07-12 11:30:44,580 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=69 pTM=0.41 ipTM=0.305 tol=2.98
2024-07-12 11:33:16,344 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=69 pTM=0.41 ipTM=0.303 tol=3.73
2024-07-12 11:35:48,101 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=69.3 pTM=0.411 ipTM=0.305 tol=2.76
2024-07-12 11:38:19,801 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=69.1 pTM=0.411 ipTM=0.31 tol=4.24
2024-07-12 11:40:51,505 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=69.4 pTM=0.412 ipTM=0.315 tol=3.05
2024-07-12 11:43:23,181 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=69.8 pTM=0.412 ipTM=0.314 tol=1.67
2024-07-12 11:45:54,819 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=69.8 pTM=0.411 ipTM=0.312 tol=1.5
2024-07-12 11:48:26,505 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=69.8 pTM=0.409 ipTM=0.314 tol=1.25
2024-07-12 11:50:58,231 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=69.9 pTM=0.408 ipTM=0.322 tol=1.78
2024-07-12 11:53:29,927 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=69.9 pTM=0.411 ipTM=0.332 tol=1.48
2024-07-12 11:56:01,650 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=70 pTM=0.411 ipTM=0.324 tol=1.36
2024-07-12 11:58:33,362 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=70.1 pTM=0.41 ipTM=0.329 tol=1.05
2024-07-12 12:01:05,056 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=70.1 pTM=0.409 ipTM=0.323 tol=0.954
2024-07-12 12:03:36,725 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=70.1 pTM=0.408 ipTM=0.328 tol=1
2024-07-12 12:06:08,425 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=70.1 pTM=0.412 ipTM=0.326 tol=1.14
2024-07-12 12:08:40,137 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=70 pTM=0.412 ipTM=0.326 tol=1.18
2024-07-12 12:11:11,842 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=69.9 pTM=0.41 ipTM=0.319 tol=1.08
2024-07-12 12:13:43,564 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=70.1 pTM=0.412 ipTM=0.324 tol=0.956
2024-07-12 12:16:15,311 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=70.2 pTM=0.41 ipTM=0.332 tol=1.12
2024-07-12 12:18:47,037 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=70.2 pTM=0.41 ipTM=0.328 tol=0.974
2024-07-12 12:21:18,772 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=70 pTM=0.411 ipTM=0.329 tol=1.26
2024-07-12 12:23:50,516 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=69.9 pTM=0.41 ipTM=0.323 tol=1
2024-07-12 12:23:50,518 alphafold2_multimer_v3_model_5_seed_000 took 4704.5s (30 recycles)
2024-07-12 12:23:52,736 reranking models by 'multimer' metric
2024-07-12 12:24:16,681 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 12:30:39,659 Relaxation took 406.9s
2024-07-12 12:30:39,659 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=69.9 pTM=0.41 ipTM=0.323
2024-07-12 12:35:36,926 Relaxation took 297.3s
2024-07-12 12:35:36,926 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=66.9 pTM=0.394 ipTM=0.324
2024-07-12 12:40:26,477 Relaxation took 289.5s
2024-07-12 12:40:26,477 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=70.4 pTM=0.404 ipTM=0.291
2024-07-12 12:50:13,205 Relaxation took 586.7s
2024-07-12 12:50:13,205 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=71.9 pTM=0.403 ipTM=0.277
2024-07-12 12:54:59,286 Relaxation took 286.1s
2024-07-12 12:54:59,287 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=70.2 pTM=0.396 ipTM=0.226
2024-07-12 12:55:11,102 Done