2024-07-12 07:47:36,562 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 07:47:36,855 Running on GPU
2024-07-12 07:47:51,702 Found 6 citations for tools or databases
2024-07-12 07:47:51,702 Query 1/1: PIPNA_PGPI (length 479)
2024-07-12 07:47:52,127 Sleeping for 10s. Reason: PENDING
2024-07-12 07:48:02,549 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:48:12,993 Sleeping for 8s. Reason: RUNNING
2024-07-12 07:48:21,402 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:48:27,854 Sleeping for 5s. Reason: RUNNING
2024-07-12 07:48:33,284 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:48:43,712 Sleeping for 8s. Reason: RUNNING
2024-07-12 07:48:53,717 Sleeping for 10s. Reason: PENDING
2024-07-12 07:49:04,191 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:49:10,629 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:49:20,058 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:49:28,269 Setting max_seq=508, max_extra_seq=2048
2024-07-12 07:53:14,187 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=83.9 pTM=0.555 ipTM=0.128
2024-07-12 07:53:19,143 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=84.8 pTM=0.563 ipTM=0.112 tol=5.04
2024-07-12 07:53:24,084 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=85.1 pTM=0.565 ipTM=0.12 tol=0.797
2024-07-12 07:53:29,024 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=84.9 pTM=0.562 ipTM=0.117 tol=1.73
2024-07-12 07:53:33,966 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.1 pTM=0.562 ipTM=0.117 tol=1.48
2024-07-12 07:53:38,899 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=84.9 pTM=0.562 ipTM=0.116 tol=1.66
2024-07-12 07:53:43,838 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.2 pTM=0.56 ipTM=0.115 tol=1.05
2024-07-12 07:53:48,778 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=85.3 pTM=0.562 ipTM=0.117 tol=1.94
2024-07-12 07:53:53,725 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=85.7 pTM=0.562 ipTM=0.114 tol=1.15
2024-07-12 07:53:58,667 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=85.2 pTM=0.561 ipTM=0.114 tol=1.81
2024-07-12 07:54:03,616 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=85.3 pTM=0.56 ipTM=0.116 tol=1.02
2024-07-12 07:54:08,563 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=84.9 pTM=0.558 ipTM=0.117 tol=1.15
2024-07-12 07:54:13,511 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=85.2 pTM=0.56 ipTM=0.116 tol=1.47
2024-07-12 07:54:18,459 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=84.9 pTM=0.559 ipTM=0.115 tol=0.981
2024-07-12 07:54:23,409 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=85 pTM=0.558 ipTM=0.116 tol=0.941
2024-07-12 07:54:28,356 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=85.1 pTM=0.56 ipTM=0.12 tol=1.18
2024-07-12 07:54:33,311 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=85.2 pTM=0.559 ipTM=0.116 tol=1.16
2024-07-12 07:54:38,265 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=84.6 pTM=0.558 ipTM=0.116 tol=2.08
2024-07-12 07:54:43,210 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=85.1 pTM=0.56 ipTM=0.116 tol=0.922
2024-07-12 07:54:48,152 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=84.9 pTM=0.559 ipTM=0.12 tol=1.17
2024-07-12 07:54:53,118 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=85.4 pTM=0.562 ipTM=0.117 tol=1.06
2024-07-12 07:54:58,060 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=84.9 pTM=0.56 ipTM=0.122 tol=1.02
2024-07-12 07:55:03,016 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=84.8 pTM=0.558 ipTM=0.119 tol=0.932
2024-07-12 07:55:07,965 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=84.9 pTM=0.559 ipTM=0.118 tol=1.44
2024-07-12 07:55:12,927 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=85.1 pTM=0.56 ipTM=0.117 tol=0.72
2024-07-12 07:55:17,888 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=84.8 pTM=0.559 ipTM=0.121 tol=1.24
2024-07-12 07:55:22,848 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=84.9 pTM=0.558 ipTM=0.118 tol=0.812
2024-07-12 07:55:27,806 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=84.7 pTM=0.559 ipTM=0.12 tol=1.2
2024-07-12 07:55:32,758 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=84.9 pTM=0.559 ipTM=0.117 tol=0.921
2024-07-12 07:55:37,717 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=85 pTM=0.56 ipTM=0.123 tol=1.63
2024-07-12 07:55:42,688 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=85.2 pTM=0.562 ipTM=0.12 tol=1.17
2024-07-12 07:55:42,688 alphafold2_multimer_v3_model_1_seed_000 took 313.3s (30 recycles)
2024-07-12 07:55:47,829 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=85.2 pTM=0.596 ipTM=0.204
2024-07-12 07:55:52,821 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=84.9 pTM=0.578 ipTM=0.159 tol=1.7
2024-07-12 07:55:57,817 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=85.1 pTM=0.585 ipTM=0.164 tol=0.619
2024-07-12 07:56:02,810 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=85.4 pTM=0.579 ipTM=0.154 tol=1.27
2024-07-12 07:56:07,803 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=85.6 pTM=0.578 ipTM=0.152 tol=0.586
2024-07-12 07:56:12,794 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=86 pTM=0.582 ipTM=0.153 tol=0.347
2024-07-12 07:56:12,795 alphafold2_multimer_v3_model_2_seed_000 took 29.9s (5 recycles)
2024-07-12 07:56:17,930 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=86.4 pTM=0.568 ipTM=0.131
2024-07-12 07:56:22,930 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=86.2 pTM=0.569 ipTM=0.117 tol=3.06
2024-07-12 07:56:27,919 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.6 pTM=0.56 ipTM=0.107 tol=1.86
2024-07-12 07:56:32,897 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=86 pTM=0.566 ipTM=0.119 tol=1.04
2024-07-12 07:56:37,876 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=86 pTM=0.564 ipTM=0.117 tol=1.04
2024-07-12 07:56:42,851 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=86.1 pTM=0.562 ipTM=0.111 tol=0.911
2024-07-12 07:56:47,825 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.7 pTM=0.565 ipTM=0.122 tol=0.481
2024-07-12 07:56:47,826 alphafold2_multimer_v3_model_3_seed_000 took 34.9s (6 recycles)
2024-07-12 07:56:52,979 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.6 pTM=0.562 ipTM=0.146
2024-07-12 07:56:57,976 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=88 pTM=0.622 ipTM=0.246 tol=5.3
2024-07-12 07:57:02,952 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=88.2 pTM=0.611 ipTM=0.231 tol=1.32
2024-07-12 07:57:07,941 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=88.4 pTM=0.612 ipTM=0.224 tol=0.336
2024-07-12 07:57:07,942 alphafold2_multimer_v3_model_4_seed_000 took 20.0s (3 recycles)
2024-07-12 07:57:13,080 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=85.2 pTM=0.565 ipTM=0.127
2024-07-12 07:57:18,086 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=86.1 pTM=0.57 ipTM=0.126 tol=4.07
2024-07-12 07:57:23,090 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=86 pTM=0.567 ipTM=0.132 tol=1.67
2024-07-12 07:57:28,096 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=87 pTM=0.565 ipTM=0.114 tol=4.02
2024-07-12 07:57:33,091 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=86.4 pTM=0.564 ipTM=0.117 tol=1.47
2024-07-12 07:57:38,077 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=85.7 pTM=0.565 ipTM=0.127 tol=1.94
2024-07-12 07:57:43,068 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=86.1 pTM=0.563 ipTM=0.119 tol=1.51
2024-07-12 07:57:48,061 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=85.9 pTM=0.564 ipTM=0.12 tol=1.65
2024-07-12 07:57:53,052 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=85.9 pTM=0.566 ipTM=0.124 tol=0.426
2024-07-12 07:57:53,052 alphafold2_multimer_v3_model_5_seed_000 took 45.0s (8 recycles)
2024-07-12 07:57:53,213 reranking models by 'multimer' metric
2024-07-12 07:58:16,210 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 07:58:31,192 Relaxation took 38.0s
2024-07-12 07:58:31,192 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=88.4 pTM=0.612 ipTM=0.224
2024-07-12 07:58:48,298 Relaxation took 17.1s
2024-07-12 07:58:48,298 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=86 pTM=0.582 ipTM=0.153
2024-07-12 07:59:19,405 Relaxation took 31.1s
2024-07-12 07:59:19,405 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=85.9 pTM=0.566 ipTM=0.124
2024-07-12 07:59:52,164 Relaxation took 32.8s
2024-07-12 07:59:52,164 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.7 pTM=0.565 ipTM=0.122
2024-07-12 08:00:20,450 Relaxation took 28.3s
2024-07-12 08:00:20,450 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=85.2 pTM=0.562 ipTM=0.12
2024-07-12 08:00:21,458 Done