2024-07-12 07:50:33,908 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 07:50:34,224 Running on GPU
2024-07-12 07:50:50,441 Found 6 citations for tools or databases
2024-07-12 07:50:50,441 Query 1/1: PITC1_ABCA5 (length 1974)
2024-07-12 07:50:50,920 Sleeping for 7s. Reason: PENDING
2024-07-12 07:50:58,348 Sleeping for 7s. Reason: RUNNING
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2024-07-12 07:51:38,450 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:51:44,861 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:51:51,287 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:52:01,741 Sleeping for 5s. Reason: RUNNING
2024-07-12 07:52:07,192 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:52:17,630 Sleeping for 7s. Reason: RUNNING
2024-07-12 07:52:25,051 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:52:34,457 Sleeping for 5s. Reason: RUNNING
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2024-07-12 07:53:51,908 Sleeping for 6s. Reason: RUNNING
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2024-07-12 07:55:00,751 Sleeping for 7s. Reason: RUNNING
2024-07-12 07:55:08,181 Sleeping for 9s. Reason: RUNNING
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2024-07-12 07:55:26,027 Sleeping for 5s. Reason: RUNNING
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2024-07-12 07:56:36,370 Sleeping for 10s. Reason: RUNNING
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2024-07-12 07:57:04,642 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:57:11,070 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:57:17,502 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:57:23,935 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:57:33,366 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:57:43,821 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:57:53,239 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:58:02,703 Sleeping for 8s. Reason: RUNNING
2024-07-12 07:58:11,121 Sleeping for 7s. Reason: RUNNING
2024-07-12 07:58:18,544 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:58:24,973 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:58:35,402 Sleeping for 7s. Reason: RUNNING
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2024-07-12 07:59:14,511 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:59:20,935 Sleeping for 10s. Reason: RUNNING
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2024-07-12 07:59:44,284 Sleeping for 9s. Reason: RUNNING
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2024-07-12 08:00:05,569 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:00:15,010 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:00:24,430 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:00:33,878 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:00:45,194 Sleeping for 8s. Reason: PENDING
2024-07-12 08:00:53,619 Sleeping for 10s. Reason: RUNNING
2024-07-12 08:01:04,088 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:01:13,514 Sleeping for 10s. Reason: RUNNING
2024-07-12 08:01:23,934 Sleeping for 9s. Reason: RUNNING
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2024-07-12 08:01:47,219 Sleeping for 5s. Reason: RUNNING
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2024-07-12 08:02:00,104 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:02:06,557 Sleeping for 9s. Reason: RUNNING
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2024-07-12 08:02:46,694 Sleeping for 8s. Reason: RUNNING
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2024-07-12 08:03:02,564 Sleeping for 10s. Reason: RUNNING
2024-07-12 08:03:12,990 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:03:21,412 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:03:28,846 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:03:38,267 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:03:43,702 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:03:49,119 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:03:58,556 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:04:06,986 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:04:16,420 Sleeping for 8s. Reason: RUNNING
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2024-07-12 08:04:32,257 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:04:39,669 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:04:45,093 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:04:51,512 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:04:56,920 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:05:05,336 Sleeping for 6s. Reason: RUNNING
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2024-07-12 08:05:20,188 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:05:28,601 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:05:38,037 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:05:44,482 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:05:50,895 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:05:58,317 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:06:05,744 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:06:13,183 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:06:22,610 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:06:32,034 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:06:37,474 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:06:44,953 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:06:51,371 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:07:00,803 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:07:08,225 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:07:15,702 Sleeping for 10s. Reason: RUNNING
2024-07-12 08:07:26,125 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:07:32,570 Sleeping for 9s. Reason: RUNNING
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2024-07-12 08:07:51,435 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:08:09,430 Setting max_seq=508, max_extra_seq=2048
2024-07-12 08:13:17,242 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.3 pTM=0.663 ipTM=0.194
2024-07-12 08:15:47,668 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=77.2 pTM=0.683 ipTM=0.208 tol=11.3
2024-07-12 08:18:17,993 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.2 pTM=0.688 ipTM=0.214 tol=10.6
2024-07-12 08:20:48,258 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.4 pTM=0.694 ipTM=0.247 tol=2.78
2024-07-12 08:23:18,567 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.4 pTM=0.7 ipTM=0.259 tol=1.78
2024-07-12 08:25:48,887 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.6 pTM=0.701 ipTM=0.265 tol=1.07
2024-07-12 08:28:19,198 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=77.9 pTM=0.705 ipTM=0.271 tol=0.869
2024-07-12 08:30:49,524 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.9 pTM=0.705 ipTM=0.278 tol=0.388
2024-07-12 08:30:49,527 alphafold2_multimer_v3_model_1_seed_000 took 1356.6s (7 recycles)
2024-07-12 08:33:22,094 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.6 pTM=0.671 ipTM=0.318
2024-07-12 08:35:52,401 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.4 pTM=0.7 ipTM=0.337 tol=2.88
2024-07-12 08:38:22,678 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=76.7 pTM=0.693 ipTM=0.342 tol=2.41
2024-07-12 08:40:53,004 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=76.8 pTM=0.689 ipTM=0.332 tol=1.06
2024-07-12 08:43:23,328 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.8 pTM=0.69 ipTM=0.325 tol=0.93
2024-07-12 08:45:53,619 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=77 pTM=0.689 ipTM=0.326 tol=0.759
2024-07-12 08:48:23,865 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77 pTM=0.691 ipTM=0.326 tol=0.465
2024-07-12 08:48:23,867 alphafold2_multimer_v3_model_2_seed_000 took 1052.1s (6 recycles)
2024-07-12 08:50:56,541 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.8 pTM=0.66 ipTM=0.202
2024-07-12 08:53:26,796 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=76.9 pTM=0.68 ipTM=0.257 tol=5.55
2024-07-12 08:55:56,976 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.9 pTM=0.677 ipTM=0.285 tol=2.19
2024-07-12 08:58:27,193 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=77.1 pTM=0.678 ipTM=0.295 tol=1.49
2024-07-12 09:00:57,375 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=77.4 pTM=0.688 ipTM=0.301 tol=1.07
2024-07-12 09:03:27,571 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.2 pTM=0.685 ipTM=0.306 tol=0.913
2024-07-12 09:05:57,785 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=77.4 pTM=0.686 ipTM=0.31 tol=0.696
2024-07-12 09:08:27,986 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=77.4 pTM=0.688 ipTM=0.312 tol=0.842
2024-07-12 09:10:58,210 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=77.5 pTM=0.686 ipTM=0.317 tol=0.541
2024-07-12 09:13:28,446 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=77.6 pTM=0.688 ipTM=0.317 tol=0.683
2024-07-12 09:15:58,725 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=77.6 pTM=0.689 ipTM=0.32 tol=0.599
2024-07-12 09:18:28,972 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=77.6 pTM=0.691 ipTM=0.325 tol=0.769
2024-07-12 09:20:59,196 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=77.3 pTM=0.687 ipTM=0.324 tol=0.458
2024-07-12 09:20:59,198 alphafold2_multimer_v3_model_3_seed_000 took 1953.0s (12 recycles)
2024-07-12 09:23:31,741 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.5 pTM=0.669 ipTM=0.269
2024-07-12 09:26:02,004 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.6 pTM=0.701 ipTM=0.317 tol=6.87
2024-07-12 09:28:32,249 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=76.2 pTM=0.697 ipTM=0.315 tol=5.12
2024-07-12 09:31:02,474 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76.8 pTM=0.702 ipTM=0.319 tol=2.88
2024-07-12 09:33:32,636 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77 pTM=0.704 ipTM=0.317 tol=4.35
2024-07-12 09:36:02,861 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77 pTM=0.706 ipTM=0.315 tol=3.61
2024-07-12 09:38:33,104 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.1 pTM=0.705 ipTM=0.318 tol=0.641
2024-07-12 09:41:03,291 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=77.4 pTM=0.708 ipTM=0.325 tol=0.613
2024-07-12 09:43:33,459 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=77.2 pTM=0.707 ipTM=0.329 tol=0.71
2024-07-12 09:46:03,655 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=77.3 pTM=0.709 ipTM=0.325 tol=1.26
2024-07-12 09:48:33,901 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=77.4 pTM=0.709 ipTM=0.329 tol=2.09
2024-07-12 09:51:04,163 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=77.2 pTM=0.707 ipTM=0.326 tol=2.35
2024-07-12 09:53:34,425 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=77.1 pTM=0.707 ipTM=0.33 tol=2.44
2024-07-12 09:56:04,699 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=77.2 pTM=0.709 ipTM=0.327 tol=1.69
2024-07-12 09:58:34,939 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77.1 pTM=0.707 ipTM=0.331 tol=1.28
2024-07-12 10:01:05,150 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=77.1 pTM=0.707 ipTM=0.329 tol=1.59
2024-07-12 10:03:35,334 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=77.2 pTM=0.706 ipTM=0.326 tol=1.53
2024-07-12 10:06:05,567 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=77.2 pTM=0.707 ipTM=0.329 tol=1.67
2024-07-12 10:08:35,808 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=77 pTM=0.703 ipTM=0.331 tol=1.35
2024-07-12 10:11:06,068 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=77.1 pTM=0.704 ipTM=0.328 tol=0.785
2024-07-12 10:13:36,357 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=77.1 pTM=0.704 ipTM=0.326 tol=1.49
2024-07-12 10:16:06,647 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=77.2 pTM=0.706 ipTM=0.326 tol=0.398
2024-07-12 10:16:06,649 alphafold2_multimer_v3_model_4_seed_000 took 3305.2s (21 recycles)
2024-07-12 10:18:39,136 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.4 pTM=0.651 ipTM=0.294
2024-07-12 10:21:09,303 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.1 pTM=0.684 ipTM=0.357 tol=3.26
2024-07-12 10:23:39,469 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.4 pTM=0.683 ipTM=0.336 tol=2.37
2024-07-12 10:26:09,634 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.8 pTM=0.686 ipTM=0.344 tol=1.29
2024-07-12 10:28:39,833 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.8 pTM=0.693 ipTM=0.336 tol=1.49
2024-07-12 10:31:09,995 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77 pTM=0.689 ipTM=0.328 tol=2.6
2024-07-12 10:33:40,201 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.1 pTM=0.691 ipTM=0.332 tol=1.69
2024-07-12 10:36:10,388 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=77.4 pTM=0.697 ipTM=0.334 tol=2.4
2024-07-12 10:38:40,551 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.2 pTM=0.697 ipTM=0.337 tol=2.06
2024-07-12 10:41:10,739 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.4 pTM=0.699 ipTM=0.334 tol=1.9
2024-07-12 10:43:40,966 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=77.5 pTM=0.7 ipTM=0.337 tol=1.28
2024-07-12 10:46:11,192 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=77.2 pTM=0.7 ipTM=0.336 tol=2.48
2024-07-12 10:48:41,446 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=77.1 pTM=0.697 ipTM=0.338 tol=2.05
2024-07-12 10:51:11,649 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=77.3 pTM=0.698 ipTM=0.342 tol=0.968
2024-07-12 10:53:41,796 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=77.2 pTM=0.696 ipTM=0.344 tol=1.22
2024-07-12 10:56:11,931 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=77.2 pTM=0.697 ipTM=0.34 tol=1.17
2024-07-12 10:58:42,087 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=77.2 pTM=0.7 ipTM=0.337 tol=1.18
2024-07-12 11:01:12,222 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=77.2 pTM=0.7 ipTM=0.336 tol=0.587
2024-07-12 11:03:42,385 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=77.1 pTM=0.696 ipTM=0.342 tol=1.29
2024-07-12 11:06:12,504 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=77 pTM=0.696 ipTM=0.344 tol=2.41
2024-07-12 11:08:42,650 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=77.2 pTM=0.696 ipTM=0.341 tol=1.99
2024-07-12 11:11:12,825 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=77.2 pTM=0.698 ipTM=0.341 tol=0.783
2024-07-12 11:13:43,048 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=77.1 pTM=0.696 ipTM=0.34 tol=0.655
2024-07-12 11:16:13,245 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=77 pTM=0.697 ipTM=0.346 tol=1.43
2024-07-12 11:18:43,413 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=77.1 pTM=0.699 ipTM=0.345 tol=1.64
2024-07-12 11:21:13,613 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=77.1 pTM=0.699 ipTM=0.342 tol=1.02
2024-07-12 11:23:43,818 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=77.2 pTM=0.7 ipTM=0.34 tol=1.97
2024-07-12 11:26:14,001 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=77.2 pTM=0.698 ipTM=0.34 tol=1.64
2024-07-12 11:28:44,178 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=77.1 pTM=0.698 ipTM=0.347 tol=1.66
2024-07-12 11:31:14,390 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=77.1 pTM=0.698 ipTM=0.347 tol=1.41
2024-07-12 11:33:44,564 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=77 pTM=0.697 ipTM=0.347 tol=2.14
2024-07-12 11:33:44,567 alphafold2_multimer_v3_model_5_seed_000 took 4655.7s (30 recycles)
2024-07-12 11:33:46,804 reranking models by 'multimer' metric
2024-07-12 11:33:50,267 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 11:36:43,616 Relaxation took 176.8s
2024-07-12 11:36:43,616 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77 pTM=0.697 ipTM=0.347
2024-07-12 11:41:52,919 Relaxation took 309.3s
2024-07-12 11:41:52,919 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=77.2 pTM=0.706 ipTM=0.326
2024-07-12 11:45:09,981 Relaxation took 197.1s
2024-07-12 11:45:09,981 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=77 pTM=0.691 ipTM=0.326
2024-07-12 11:52:27,068 Relaxation took 437.1s
2024-07-12 11:52:27,068 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.3 pTM=0.687 ipTM=0.324
2024-07-12 11:54:51,425 Relaxation took 144.4s
2024-07-12 11:54:51,425 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=77.9 pTM=0.705 ipTM=0.278
2024-07-12 11:55:02,457 Done