2024-07-12 07:55:14,827 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 07:55:15,139 Running on GPU
2024-07-12 07:55:25,233 Found 6 citations for tools or databases
2024-07-12 07:55:25,233 Query 1/1: PKHA1_SNR48 (length 743)
2024-07-12 07:55:25,696 Sleeping for 10s. Reason: PENDING
2024-07-12 07:55:36,114 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:55:42,530 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:55:52,957 Sleeping for 6s. Reason: RUNNING
2024-07-12 07:55:59,387 Sleeping for 7s. Reason: RUNNING
2024-07-12 07:56:06,864 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:56:16,296 Sleeping for 5s. Reason: RUNNING
2024-07-12 07:56:21,705 Sleeping for 5s. Reason: RUNNING
2024-07-12 07:56:27,106 Sleeping for 7s. Reason: RUNNING
2024-07-12 07:56:36,316 Sleeping for 6s. Reason: PENDING
2024-07-12 07:56:42,746 Sleeping for 10s. Reason: RUNNING
2024-07-12 07:56:53,189 Sleeping for 5s. Reason: RUNNING
2024-07-12 07:56:58,619 Sleeping for 9s. Reason: RUNNING
2024-07-12 07:57:08,045 Sleeping for 7s. Reason: RUNNING
2024-07-12 07:57:17,431 Setting max_seq=508, max_extra_seq=2048
2024-07-12 08:00:49,019 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=49.1 pTM=0.29 ipTM=0.206
2024-07-12 08:00:59,986 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=51.2 pTM=0.272 ipTM=0.155 tol=14.7
2024-07-12 08:01:10,954 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=52.8 pTM=0.3 ipTM=0.199 tol=9.44
2024-07-12 08:01:21,961 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=52.3 pTM=0.282 ipTM=0.167 tol=5.14
2024-07-12 08:01:32,979 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=53.2 pTM=0.266 ipTM=0.168 tol=3.85
2024-07-12 08:01:44,021 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=53.5 pTM=0.254 ipTM=0.163 tol=2.85
2024-07-12 08:01:55,089 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=53.2 pTM=0.25 ipTM=0.168 tol=4.82
2024-07-12 08:02:06,149 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=53.2 pTM=0.251 ipTM=0.168 tol=4.59
2024-07-12 08:02:17,223 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=53.4 pTM=0.249 ipTM=0.163 tol=3.12
2024-07-12 08:02:28,309 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=53.2 pTM=0.247 ipTM=0.16 tol=3.56
2024-07-12 08:02:39,406 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=53.4 pTM=0.248 ipTM=0.16 tol=4.05
2024-07-12 08:02:50,496 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=52.9 pTM=0.249 ipTM=0.152 tol=3.49
2024-07-12 08:03:01,588 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=52.7 pTM=0.248 ipTM=0.147 tol=5.7
2024-07-12 08:03:12,688 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=53.1 pTM=0.246 ipTM=0.137 tol=7.3
2024-07-12 08:03:23,788 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=53.5 pTM=0.247 ipTM=0.144 tol=3.56
2024-07-12 08:03:34,887 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=53.3 pTM=0.248 ipTM=0.141 tol=3.85
2024-07-12 08:03:45,986 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=52.8 pTM=0.247 ipTM=0.141 tol=4.57
2024-07-12 08:03:57,091 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=53.5 pTM=0.249 ipTM=0.161 tol=3.38
2024-07-12 08:04:08,195 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=53.9 pTM=0.252 ipTM=0.161 tol=2.7
2024-07-12 08:04:19,288 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=53.9 pTM=0.252 ipTM=0.172 tol=3.8
2024-07-12 08:04:30,382 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=54.2 pTM=0.252 ipTM=0.179 tol=3.41
2024-07-12 08:04:41,484 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=53.8 pTM=0.25 ipTM=0.173 tol=3.98
2024-07-12 08:04:52,580 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=54.1 pTM=0.249 ipTM=0.167 tol=5.48
2024-07-12 08:05:03,674 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=54.2 pTM=0.249 ipTM=0.172 tol=4.23
2024-07-12 08:05:14,777 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=54.6 pTM=0.25 ipTM=0.173 tol=3.06
2024-07-12 08:05:25,867 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=54.3 pTM=0.25 ipTM=0.174 tol=3.28
2024-07-12 08:05:36,964 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=54.1 pTM=0.251 ipTM=0.179 tol=4.43
2024-07-12 08:05:48,067 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=54 pTM=0.249 ipTM=0.174 tol=2.79
2024-07-12 08:05:59,169 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=53.5 pTM=0.249 ipTM=0.171 tol=3.17
2024-07-12 08:06:10,270 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=53.5 pTM=0.249 ipTM=0.169 tol=3.58
2024-07-12 08:06:21,367 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=53.8 pTM=0.251 ipTM=0.179 tol=1.79
2024-07-12 08:06:21,368 alphafold2_multimer_v3_model_1_seed_000 took 495.2s (30 recycles)
2024-07-12 08:06:35,391 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=50.2 pTM=0.273 ipTM=0.15
2024-07-12 08:06:46,495 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=51.6 pTM=0.261 ipTM=0.139 tol=12.4
2024-07-12 08:06:57,614 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=52.8 pTM=0.256 ipTM=0.133 tol=11.2
2024-07-12 08:07:08,728 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=53.2 pTM=0.256 ipTM=0.15 tol=5.24
2024-07-12 08:07:19,840 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=53.9 pTM=0.258 ipTM=0.158 tol=4.7
2024-07-12 08:07:30,956 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=53.9 pTM=0.254 ipTM=0.159 tol=2.61
2024-07-12 08:07:42,061 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=54.1 pTM=0.252 ipTM=0.161 tol=1.64
2024-07-12 08:07:53,171 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=54.1 pTM=0.252 ipTM=0.163 tol=2.04
2024-07-12 08:08:04,289 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=54.1 pTM=0.251 ipTM=0.165 tol=1.73
2024-07-12 08:08:15,412 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=54.1 pTM=0.25 ipTM=0.165 tol=3.19
2024-07-12 08:08:26,532 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=53.9 pTM=0.251 ipTM=0.163 tol=2.95
2024-07-12 08:08:37,652 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=54.2 pTM=0.252 ipTM=0.163 tol=2.45
2024-07-12 08:08:48,772 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=54.2 pTM=0.25 ipTM=0.162 tol=1.73
2024-07-12 08:08:59,896 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=54.1 pTM=0.246 ipTM=0.162 tol=2.5
2024-07-12 08:09:11,013 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=54.3 pTM=0.249 ipTM=0.162 tol=0.975
2024-07-12 08:09:22,133 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=54.1 pTM=0.248 ipTM=0.161 tol=1.52
2024-07-12 08:09:33,253 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=53.8 pTM=0.248 ipTM=0.158 tol=1.66
2024-07-12 08:09:44,370 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=53.9 pTM=0.249 ipTM=0.162 tol=2.59
2024-07-12 08:09:55,487 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=54.3 pTM=0.249 ipTM=0.161 tol=2.18
2024-07-12 08:10:06,608 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=54.1 pTM=0.249 ipTM=0.163 tol=2.04
2024-07-12 08:10:17,734 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=54.3 pTM=0.247 ipTM=0.164 tol=2.22
2024-07-12 08:10:28,861 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=54.5 pTM=0.249 ipTM=0.165 tol=3.1
2024-07-12 08:10:39,979 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=54.2 pTM=0.248 ipTM=0.159 tol=3.63
2024-07-12 08:10:51,104 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=54.6 pTM=0.249 ipTM=0.166 tol=4.15
2024-07-12 08:11:02,228 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=54.5 pTM=0.247 ipTM=0.166 tol=3.47
2024-07-12 08:11:13,357 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=54.3 pTM=0.248 ipTM=0.166 tol=3.8
2024-07-12 08:11:24,469 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=54.1 pTM=0.25 ipTM=0.169 tol=3.81
2024-07-12 08:11:35,584 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=54 pTM=0.251 ipTM=0.166 tol=4.41
2024-07-12 08:11:46,694 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=53.8 pTM=0.249 ipTM=0.161 tol=4.89
2024-07-12 08:11:57,780 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=53.8 pTM=0.249 ipTM=0.164 tol=2.11
2024-07-12 08:12:08,886 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=54 pTM=0.249 ipTM=0.168 tol=2.45
2024-07-12 08:12:08,887 alphafold2_multimer_v3_model_2_seed_000 took 344.6s (30 recycles)
2024-07-12 08:12:20,430 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=49.8 pTM=0.264 ipTM=0.156
2024-07-12 08:12:31,612 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=50.9 pTM=0.273 ipTM=0.174 tol=19.8
2024-07-12 08:12:42,779 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=51.5 pTM=0.266 ipTM=0.16 tol=9.79
2024-07-12 08:12:53,953 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=50.4 pTM=0.272 ipTM=0.146 tol=10.3
2024-07-12 08:13:05,128 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=51.7 pTM=0.268 ipTM=0.165 tol=11.1
2024-07-12 08:13:16,275 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=52.2 pTM=0.269 ipTM=0.158 tol=3.09
2024-07-12 08:13:27,458 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=52 pTM=0.278 ipTM=0.179 tol=6.55
2024-07-12 08:13:38,622 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=52.5 pTM=0.277 ipTM=0.175 tol=6.83
2024-07-12 08:13:49,798 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=52.5 pTM=0.282 ipTM=0.17 tol=3.99
2024-07-12 08:14:00,968 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=52.1 pTM=0.277 ipTM=0.167 tol=8.48
2024-07-12 08:14:12,133 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=52.4 pTM=0.297 ipTM=0.189 tol=7.79
2024-07-12 08:14:23,303 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=52.2 pTM=0.278 ipTM=0.178 tol=4.16
2024-07-12 08:14:34,483 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=50.9 pTM=0.273 ipTM=0.154 tol=19.1
2024-07-12 08:14:45,659 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=52.4 pTM=0.257 ipTM=0.141 tol=15.9
2024-07-12 08:14:56,815 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=52.6 pTM=0.278 ipTM=0.176 tol=5.57
2024-07-12 08:15:07,983 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=52.3 pTM=0.277 ipTM=0.172 tol=11.6
2024-07-12 08:15:19,133 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=53.2 pTM=0.295 ipTM=0.191 tol=10.9
2024-07-12 08:15:30,288 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=52.9 pTM=0.276 ipTM=0.175 tol=6.15
2024-07-12 08:15:41,443 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=53 pTM=0.282 ipTM=0.189 tol=8.38
2024-07-12 08:15:52,590 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=54 pTM=0.293 ipTM=0.205 tol=9.8
2024-07-12 08:16:03,731 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=54 pTM=0.294 ipTM=0.213 tol=3.26
2024-07-12 08:16:14,877 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=53.8 pTM=0.296 ipTM=0.215 tol=5.49
2024-07-12 08:16:26,013 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=54.3 pTM=0.302 ipTM=0.225 tol=4.34
2024-07-12 08:16:37,156 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=54.3 pTM=0.309 ipTM=0.234 tol=4.55
2024-07-12 08:16:48,293 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=54.5 pTM=0.305 ipTM=0.234 tol=4.11
2024-07-12 08:16:59,433 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=54.4 pTM=0.31 ipTM=0.235 tol=3.24
2024-07-12 08:17:10,559 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=55.6 pTM=0.36 ipTM=0.293 tol=7.37
2024-07-12 08:17:21,675 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=56.1 pTM=0.371 ipTM=0.326 tol=4.36
2024-07-12 08:17:32,784 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=56.8 pTM=0.42 ipTM=0.386 tol=2.34
2024-07-12 08:17:43,892 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=56.2 pTM=0.385 ipTM=0.35 tol=2.17
2024-07-12 08:17:54,991 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=57 pTM=0.415 ipTM=0.384 tol=1.73
2024-07-12 08:17:54,992 alphafold2_multimer_v3_model_3_seed_000 took 345.7s (30 recycles)
2024-07-12 08:18:06,477 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=47.7 pTM=0.265 ipTM=0.168
2024-07-12 08:18:17,637 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=47.7 pTM=0.326 ipTM=0.275 tol=17.5
2024-07-12 08:18:28,802 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=48.8 pTM=0.278 ipTM=0.177 tol=11
2024-07-12 08:18:39,961 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=48.7 pTM=0.264 ipTM=0.156 tol=9.89
2024-07-12 08:18:51,108 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=49.2 pTM=0.288 ipTM=0.196 tol=8.34
2024-07-12 08:19:02,264 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=51.3 pTM=0.333 ipTM=0.318 tol=5.92
2024-07-12 08:19:13,425 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=52.3 pTM=0.344 ipTM=0.345 tol=6.98
2024-07-12 08:19:24,598 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=53 pTM=0.355 ipTM=0.366 tol=3.73
2024-07-12 08:19:35,772 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=52.9 pTM=0.36 ipTM=0.375 tol=3.38
2024-07-12 08:19:46,951 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=52.9 pTM=0.362 ipTM=0.378 tol=2.99
2024-07-12 08:19:58,118 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=52.8 pTM=0.363 ipTM=0.379 tol=3.53
2024-07-12 08:20:09,286 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=53 pTM=0.365 ipTM=0.384 tol=3.05
2024-07-12 08:20:20,461 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=52.8 pTM=0.364 ipTM=0.382 tol=2.17
2024-07-12 08:20:31,635 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=52.8 pTM=0.362 ipTM=0.378 tol=2.09
2024-07-12 08:20:42,805 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=52.9 pTM=0.364 ipTM=0.383 tol=3.24
2024-07-12 08:20:53,966 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=52.4 pTM=0.356 ipTM=0.37 tol=2.85
2024-07-12 08:21:05,133 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=52.5 pTM=0.354 ipTM=0.363 tol=3.7
2024-07-12 08:21:16,300 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=52.1 pTM=0.353 ipTM=0.36 tol=1.85
2024-07-12 08:21:27,469 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=52.2 pTM=0.356 ipTM=0.365 tol=2.25
2024-07-12 08:21:38,636 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=52.7 pTM=0.357 ipTM=0.368 tol=2.45
2024-07-12 08:21:49,803 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=52.1 pTM=0.356 ipTM=0.365 tol=2.72
2024-07-12 08:22:00,968 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=52.8 pTM=0.364 ipTM=0.382 tol=3.12
2024-07-12 08:22:12,137 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=52.8 pTM=0.364 ipTM=0.384 tol=2.75
2024-07-12 08:22:23,294 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=52.7 pTM=0.361 ipTM=0.376 tol=2.29
2024-07-12 08:22:34,456 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=52.7 pTM=0.358 ipTM=0.371 tol=2.34
2024-07-12 08:22:45,623 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=52.7 pTM=0.357 ipTM=0.368 tol=1.65
2024-07-12 08:22:56,785 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=52.3 pTM=0.357 ipTM=0.368 tol=4.05
2024-07-12 08:23:07,957 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=52.8 pTM=0.36 ipTM=0.375 tol=4.02
2024-07-12 08:23:19,121 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=52.4 pTM=0.36 ipTM=0.375 tol=3.61
2024-07-12 08:23:30,286 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=52.2 pTM=0.361 ipTM=0.376 tol=4.99
2024-07-12 08:23:41,450 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=52.3 pTM=0.36 ipTM=0.376 tol=5.77
2024-07-12 08:23:41,451 alphafold2_multimer_v3_model_4_seed_000 took 346.1s (30 recycles)
2024-07-12 08:23:54,882 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=49.2 pTM=0.26 ipTM=0.141
2024-07-12 08:24:06,091 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=51 pTM=0.289 ipTM=0.178 tol=20
2024-07-12 08:24:17,322 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=50.8 pTM=0.273 ipTM=0.129 tol=14.3
2024-07-12 08:24:28,537 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=50.5 pTM=0.251 ipTM=0.128 tol=12.5
2024-07-12 08:24:39,736 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=49.9 pTM=0.255 ipTM=0.135 tol=16.2
2024-07-12 08:24:50,905 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=51.1 pTM=0.259 ipTM=0.149 tol=8.64
2024-07-12 08:25:02,098 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=50.8 pTM=0.254 ipTM=0.132 tol=4.7
2024-07-12 08:25:13,291 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=51.1 pTM=0.255 ipTM=0.134 tol=6.41
2024-07-12 08:25:24,487 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=50.2 pTM=0.265 ipTM=0.133 tol=5.93
2024-07-12 08:25:35,676 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=51 pTM=0.254 ipTM=0.135 tol=4.5
2024-07-12 08:25:46,869 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=50.2 pTM=0.253 ipTM=0.131 tol=4.74
2024-07-12 08:25:58,061 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=50.8 pTM=0.254 ipTM=0.132 tol=4.85
2024-07-12 08:26:09,259 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=50.3 pTM=0.252 ipTM=0.132 tol=5.16
2024-07-12 08:26:20,448 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=51 pTM=0.254 ipTM=0.134 tol=5.15
2024-07-12 08:26:31,651 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=50.2 pTM=0.279 ipTM=0.135 tol=5.91
2024-07-12 08:26:42,847 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=50.9 pTM=0.255 ipTM=0.137 tol=6.31
2024-07-12 08:26:54,033 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=50.4 pTM=0.257 ipTM=0.137 tol=6.55
2024-07-12 08:27:05,221 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=50.8 pTM=0.254 ipTM=0.134 tol=6.37
2024-07-12 08:27:16,414 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=50.4 pTM=0.255 ipTM=0.133 tol=7.27
2024-07-12 08:27:27,610 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=51.3 pTM=0.254 ipTM=0.131 tol=5.84
2024-07-12 08:27:38,804 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=50.7 pTM=0.261 ipTM=0.136 tol=4.57
2024-07-12 08:27:49,995 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=50.7 pTM=0.256 ipTM=0.136 tol=4.88
2024-07-12 08:28:01,199 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=50.6 pTM=0.257 ipTM=0.136 tol=4.39
2024-07-12 08:28:12,389 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=51 pTM=0.254 ipTM=0.134 tol=5.9
2024-07-12 08:28:23,598 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=50.2 pTM=0.254 ipTM=0.129 tol=11.2
2024-07-12 08:28:34,789 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=51.4 pTM=0.251 ipTM=0.129 tol=6.29
2024-07-12 08:28:45,982 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=51 pTM=0.249 ipTM=0.127 tol=7.09
2024-07-12 08:28:57,187 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=51.4 pTM=0.254 ipTM=0.132 tol=5.44
2024-07-12 08:29:08,380 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=50.9 pTM=0.254 ipTM=0.131 tol=5.33
2024-07-12 08:29:19,575 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=51.2 pTM=0.251 ipTM=0.127 tol=5.34
2024-07-12 08:29:30,764 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=50.7 pTM=0.254 ipTM=0.131 tol=9.23
2024-07-12 08:29:30,764 alphafold2_multimer_v3_model_5_seed_000 took 347.1s (30 recycles)
2024-07-12 08:29:31,118 reranking models by 'multimer' metric
2024-07-12 08:29:47,782 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 08:30:35,384 Relaxation took 64.3s
2024-07-12 08:30:35,384 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=57 pTM=0.415 ipTM=0.384
2024-07-12 08:31:43,832 Relaxation took 68.4s
2024-07-12 08:31:43,833 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=52.3 pTM=0.36 ipTM=0.376
2024-07-12 08:33:00,797 Relaxation took 77.0s
2024-07-12 08:33:00,797 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=53.8 pTM=0.251 ipTM=0.179
2024-07-12 08:33:46,427 Relaxation took 45.6s
2024-07-12 08:33:46,428 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=54 pTM=0.249 ipTM=0.168
2024-07-12 08:34:42,593 Relaxation took 56.2s
2024-07-12 08:34:42,593 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=50.7 pTM=0.254 ipTM=0.131
2024-07-12 08:34:46,700 Done