2024-07-12 08:13:16,420 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 08:13:16,757 Running on GPU
2024-07-12 08:13:34,729 Found 6 citations for tools or databases
2024-07-12 08:13:34,730 Query 1/1: PKNX1_ERCC2 (length 1196)
2024-07-12 08:13:35,179 Sleeping for 10s. Reason: PENDING
2024-07-12 08:13:45,654 Sleeping for 10s. Reason: RUNNING
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2024-07-12 08:14:17,335 Sleeping for 5s. Reason: RUNNING
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2024-07-12 08:14:51,066 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:14:57,494 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:15:02,931 Sleeping for 9s. Reason: RUNNING
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2024-07-12 08:15:41,657 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:15:49,085 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:15:58,503 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:16:10,074 Sleeping for 8s. Reason: PENDING
2024-07-12 08:16:18,518 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:16:27,946 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:16:33,360 Sleeping for 6s. Reason: RUNNING
2024-07-12 08:16:39,794 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:16:47,220 Sleeping for 7s. Reason: RUNNING
2024-07-12 08:16:54,642 Sleeping for 9s. Reason: RUNNING
2024-07-12 08:17:04,067 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:17:09,487 Sleeping for 8s. Reason: RUNNING
2024-07-12 08:17:17,912 Sleeping for 5s. Reason: RUNNING
2024-07-12 08:17:28,531 Setting max_seq=508, max_extra_seq=2048
2024-07-12 08:21:24,211 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=68.4 pTM=0.661 ipTM=0.508
2024-07-12 08:21:58,875 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.2 pTM=0.647 ipTM=0.412 tol=8.58
2024-07-12 08:22:33,737 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=69.4 pTM=0.639 ipTM=0.282 tol=5.85
2024-07-12 08:23:08,649 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=69.2 pTM=0.634 ipTM=0.249 tol=3.16
2024-07-12 08:23:43,662 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69 pTM=0.635 ipTM=0.257 tol=2.1
2024-07-12 08:24:18,712 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.2 pTM=0.636 ipTM=0.232 tol=2.51
2024-07-12 08:24:53,795 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.9 pTM=0.636 ipTM=0.242 tol=2.01
2024-07-12 08:25:28,848 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=69.2 pTM=0.645 ipTM=0.328 tol=2.91
2024-07-12 08:26:03,887 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=69.4 pTM=0.651 ipTM=0.38 tol=6.92
2024-07-12 08:26:38,920 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=69.4 pTM=0.652 ipTM=0.371 tol=1.39
2024-07-12 08:27:13,931 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=69.5 pTM=0.649 ipTM=0.372 tol=2.21
2024-07-12 08:27:48,878 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=69.4 pTM=0.649 ipTM=0.38 tol=1.22
2024-07-12 08:28:23,824 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=69.2 pTM=0.645 ipTM=0.382 tol=1.36
2024-07-12 08:28:58,785 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=69.3 pTM=0.642 ipTM=0.385 tol=1.61
2024-07-12 08:29:33,786 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=69.2 pTM=0.643 ipTM=0.383 tol=1.02
2024-07-12 08:30:08,763 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=69.1 pTM=0.643 ipTM=0.374 tol=1.89
2024-07-12 08:30:43,759 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=69.1 pTM=0.641 ipTM=0.365 tol=2.54
2024-07-12 08:31:18,755 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=69 pTM=0.642 ipTM=0.381 tol=1.66
2024-07-12 08:31:53,745 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=69.2 pTM=0.648 ipTM=0.396 tol=1.57
2024-07-12 08:32:28,770 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=69.3 pTM=0.651 ipTM=0.398 tol=1.47
2024-07-12 08:33:03,795 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=69.6 pTM=0.647 ipTM=0.393 tol=2.46
2024-07-12 08:33:38,798 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=69.4 pTM=0.643 ipTM=0.382 tol=1.25
2024-07-12 08:34:13,811 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=68.9 pTM=0.64 ipTM=0.372 tol=1.59
2024-07-12 08:34:48,807 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=69.2 pTM=0.646 ipTM=0.371 tol=1.25
2024-07-12 08:35:23,767 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=69.1 pTM=0.646 ipTM=0.381 tol=1.16
2024-07-12 08:35:58,762 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=69.6 pTM=0.653 ipTM=0.385 tol=1.08
2024-07-12 08:36:33,749 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=69.4 pTM=0.65 ipTM=0.375 tol=1.37
2024-07-12 08:37:08,768 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=69.4 pTM=0.646 ipTM=0.382 tol=2.33
2024-07-12 08:37:43,772 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=69.6 pTM=0.642 ipTM=0.384 tol=2.16
2024-07-12 08:38:18,813 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=69.6 pTM=0.643 ipTM=0.383 tol=2.69
2024-07-12 08:38:53,858 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=69.4 pTM=0.642 ipTM=0.383 tol=1.73
2024-07-12 08:38:53,859 alphafold2_multimer_v3_model_1_seed_000 took 1211.9s (30 recycles)
2024-07-12 08:39:29,786 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=66.4 pTM=0.624 ipTM=0.218
2024-07-12 08:40:04,861 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=68.1 pTM=0.639 ipTM=0.408 tol=14
2024-07-12 08:40:39,957 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=69.4 pTM=0.648 ipTM=0.448 tol=6.43
2024-07-12 08:41:15,048 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=70 pTM=0.648 ipTM=0.416 tol=3.74
2024-07-12 08:41:50,120 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=69.9 pTM=0.639 ipTM=0.307 tol=4.41
2024-07-12 08:42:25,207 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=69.8 pTM=0.636 ipTM=0.259 tol=3.07
2024-07-12 08:43:00,308 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=69.8 pTM=0.637 ipTM=0.27 tol=2.62
2024-07-12 08:43:35,435 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=70 pTM=0.636 ipTM=0.25 tol=4.75
2024-07-12 08:44:10,583 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=69.7 pTM=0.634 ipTM=0.222 tol=5.51
2024-07-12 08:44:45,750 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=69.6 pTM=0.634 ipTM=0.233 tol=2.9
2024-07-12 08:45:20,923 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=69.6 pTM=0.634 ipTM=0.229 tol=3.15
2024-07-12 08:45:56,067 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=69.4 pTM=0.632 ipTM=0.218 tol=1.98
2024-07-12 08:46:31,222 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=69.2 pTM=0.632 ipTM=0.232 tol=2.41
2024-07-12 08:47:06,383 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=69.5 pTM=0.633 ipTM=0.232 tol=2.8
2024-07-12 08:47:41,554 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=69.8 pTM=0.637 ipTM=0.228 tol=2.35
2024-07-12 08:48:16,716 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=69.6 pTM=0.634 ipTM=0.248 tol=3.03
2024-07-12 08:48:51,863 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=69.2 pTM=0.63 ipTM=0.234 tol=2.61
2024-07-12 08:49:26,987 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=69.2 pTM=0.631 ipTM=0.24 tol=2.45
2024-07-12 08:50:02,141 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=69.4 pTM=0.634 ipTM=0.256 tol=2.89
2024-07-12 08:50:37,278 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=69.2 pTM=0.632 ipTM=0.249 tol=2.44
2024-07-12 08:51:12,431 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=69.6 pTM=0.634 ipTM=0.254 tol=2.78
2024-07-12 08:51:47,560 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=69.4 pTM=0.633 ipTM=0.244 tol=3.3
2024-07-12 08:52:22,664 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=69.2 pTM=0.631 ipTM=0.249 tol=3.9
2024-07-12 08:52:57,801 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=69.5 pTM=0.633 ipTM=0.247 tol=2.57
2024-07-12 08:53:32,914 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=69.3 pTM=0.631 ipTM=0.218 tol=2.85
2024-07-12 08:54:08,052 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=69.8 pTM=0.637 ipTM=0.244 tol=3.03
2024-07-12 08:54:43,188 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=69.6 pTM=0.637 ipTM=0.262 tol=2.78
2024-07-12 08:55:18,355 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=69.7 pTM=0.636 ipTM=0.237 tol=2.28
2024-07-12 08:55:53,522 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=69.5 pTM=0.633 ipTM=0.212 tol=3.12
2024-07-12 08:56:28,683 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=69.6 pTM=0.632 ipTM=0.209 tol=2.92
2024-07-12 08:57:03,832 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=69.5 pTM=0.633 ipTM=0.219 tol=2.16
2024-07-12 08:57:03,833 alphafold2_multimer_v3_model_2_seed_000 took 1089.1s (30 recycles)
2024-07-12 08:57:39,810 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.8 pTM=0.628 ipTM=0.158
2024-07-12 08:58:14,947 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=68.7 pTM=0.632 ipTM=0.17 tol=12.3
2024-07-12 08:58:50,065 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=68.7 pTM=0.631 ipTM=0.17 tol=8.22
2024-07-12 08:59:25,184 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=68.7 pTM=0.635 ipTM=0.174 tol=5.59
2024-07-12 09:00:00,304 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=68.9 pTM=0.637 ipTM=0.174 tol=5.71
2024-07-12 09:00:35,447 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=68.9 pTM=0.637 ipTM=0.172 tol=3.3
2024-07-12 09:01:10,580 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=68.8 pTM=0.637 ipTM=0.172 tol=4.02
2024-07-12 09:01:45,710 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=68.7 pTM=0.638 ipTM=0.182 tol=3.52
2024-07-12 09:02:20,820 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=68.9 pTM=0.639 ipTM=0.175 tol=3.96
2024-07-12 09:02:55,923 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=68.7 pTM=0.638 ipTM=0.177 tol=3.57
2024-07-12 09:03:31,025 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=68.8 pTM=0.638 ipTM=0.173 tol=3.85
2024-07-12 09:04:06,132 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=68.8 pTM=0.638 ipTM=0.17 tol=3.92
2024-07-12 09:04:41,240 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=68.9 pTM=0.637 ipTM=0.17 tol=3.35
2024-07-12 09:05:16,370 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=68.8 pTM=0.638 ipTM=0.179 tol=2.99
2024-07-12 09:05:51,469 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=68.9 pTM=0.638 ipTM=0.174 tol=3.52
2024-07-12 09:06:26,582 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=68.7 pTM=0.637 ipTM=0.185 tol=3.12
2024-07-12 09:07:01,692 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=68.9 pTM=0.639 ipTM=0.18 tol=2.41
2024-07-12 09:07:36,808 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=68.6 pTM=0.638 ipTM=0.182 tol=2.64
2024-07-12 09:08:11,941 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=68.9 pTM=0.638 ipTM=0.182 tol=1.98
2024-07-12 09:08:47,054 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=68.6 pTM=0.637 ipTM=0.182 tol=1.52
2024-07-12 09:09:22,169 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=68.8 pTM=0.637 ipTM=0.176 tol=2.66
2024-07-12 09:09:57,277 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=68.8 pTM=0.638 ipTM=0.182 tol=1.54
2024-07-12 09:10:32,371 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=68.7 pTM=0.637 ipTM=0.175 tol=2.56
2024-07-12 09:11:07,502 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=69 pTM=0.641 ipTM=0.181 tol=1.99
2024-07-12 09:11:42,616 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=69.4 pTM=0.643 ipTM=0.18 tol=2.74
2024-07-12 09:12:17,719 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=69.2 pTM=0.64 ipTM=0.174 tol=2.86
2024-07-12 09:12:52,818 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=69.2 pTM=0.641 ipTM=0.176 tol=1.86
2024-07-12 09:13:27,927 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=69.3 pTM=0.642 ipTM=0.178 tol=3.22
2024-07-12 09:14:03,044 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=69.3 pTM=0.641 ipTM=0.178 tol=3.58
2024-07-12 09:14:38,164 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=69.1 pTM=0.641 ipTM=0.186 tol=3.68
2024-07-12 09:15:13,280 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=69.4 pTM=0.642 ipTM=0.18 tol=2.76
2024-07-12 09:15:13,281 alphafold2_multimer_v3_model_3_seed_000 took 1088.6s (30 recycles)
2024-07-12 09:15:49,176 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=68.7 pTM=0.675 ipTM=0.609
2024-07-12 09:16:24,244 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=69.7 pTM=0.659 ipTM=0.527 tol=14.2
2024-07-12 09:16:59,313 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=68.3 pTM=0.631 ipTM=0.303 tol=11.9
2024-07-12 09:17:34,432 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=68.5 pTM=0.628 ipTM=0.226 tol=6.2
2024-07-12 09:18:09,561 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68.4 pTM=0.627 ipTM=0.2 tol=6.06
2024-07-12 09:18:44,679 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=68.2 pTM=0.627 ipTM=0.201 tol=3.88
2024-07-12 09:19:19,777 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=68.4 pTM=0.636 ipTM=0.311 tol=4.24
2024-07-12 09:19:54,876 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=68.4 pTM=0.635 ipTM=0.299 tol=3.52
2024-07-12 09:20:29,985 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=68.2 pTM=0.627 ipTM=0.216 tol=4.25
2024-07-12 09:21:05,116 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=68.2 pTM=0.626 ipTM=0.208 tol=3.17
2024-07-12 09:21:40,251 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=67.5 pTM=0.626 ipTM=0.205 tol=7.52
2024-07-12 09:22:15,367 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=67.9 pTM=0.625 ipTM=0.196 tol=7.08
2024-07-12 09:22:50,484 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=67.9 pTM=0.625 ipTM=0.195 tol=6.12
2024-07-12 09:23:25,579 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=67.9 pTM=0.625 ipTM=0.182 tol=3.24
2024-07-12 09:24:00,701 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=68 pTM=0.625 ipTM=0.184 tol=2.03
2024-07-12 09:24:35,822 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=68 pTM=0.627 ipTM=0.228 tol=6.91
2024-07-12 09:25:10,936 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=67.8 pTM=0.625 ipTM=0.202 tol=2.97
2024-07-12 09:25:46,067 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=67.6 pTM=0.626 ipTM=0.222 tol=2.71
2024-07-12 09:26:21,207 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=67.8 pTM=0.624 ipTM=0.201 tol=4.22
2024-07-12 09:26:56,330 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=67.7 pTM=0.628 ipTM=0.219 tol=2.41
2024-07-12 09:27:31,489 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=67.8 pTM=0.626 ipTM=0.204 tol=3.64
2024-07-12 09:28:06,648 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=67.8 pTM=0.625 ipTM=0.199 tol=3.58
2024-07-12 09:28:41,803 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=67.5 pTM=0.625 ipTM=0.213 tol=3.71
2024-07-12 09:29:16,988 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=68.1 pTM=0.626 ipTM=0.196 tol=5.13
2024-07-12 09:29:52,136 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=67.8 pTM=0.626 ipTM=0.191 tol=5.79
2024-07-12 09:30:27,297 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=67.8 pTM=0.625 ipTM=0.198 tol=4.8
2024-07-12 09:31:02,477 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=67.8 pTM=0.625 ipTM=0.193 tol=4.3
2024-07-12 09:31:37,657 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=67.8 pTM=0.626 ipTM=0.199 tol=2.99
2024-07-12 09:32:12,837 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=67.8 pTM=0.625 ipTM=0.187 tol=2.42
2024-07-12 09:32:48,038 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=67.7 pTM=0.625 ipTM=0.198 tol=1.7
2024-07-12 09:33:23,214 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=67.9 pTM=0.625 ipTM=0.191 tol=1.79
2024-07-12 09:33:23,215 alphafold2_multimer_v3_model_4_seed_000 took 1089.1s (30 recycles)
2024-07-12 09:34:04,496 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.7 pTM=0.633 ipTM=0.255
2024-07-12 09:34:39,616 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=68.7 pTM=0.643 ipTM=0.262 tol=12.4
2024-07-12 09:35:14,773 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.9 pTM=0.635 ipTM=0.208 tol=5.39
2024-07-12 09:35:49,950 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=68.9 pTM=0.635 ipTM=0.192 tol=3.64
2024-07-12 09:36:25,171 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=69.1 pTM=0.635 ipTM=0.179 tol=3.99
2024-07-12 09:37:00,379 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=69.4 pTM=0.637 ipTM=0.184 tol=4.03
2024-07-12 09:37:35,612 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=69.4 pTM=0.636 ipTM=0.174 tol=4.06
2024-07-12 09:38:10,864 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=69.4 pTM=0.637 ipTM=0.17 tol=3.96
2024-07-12 09:38:46,105 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=69.3 pTM=0.636 ipTM=0.168 tol=4.52
2024-07-12 09:39:21,343 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=69.2 pTM=0.636 ipTM=0.174 tol=2.6
2024-07-12 09:39:56,609 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=69.2 pTM=0.636 ipTM=0.168 tol=2.61
2024-07-12 09:40:31,826 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=69.1 pTM=0.635 ipTM=0.168 tol=2.35
2024-07-12 09:41:07,044 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=69.2 pTM=0.635 ipTM=0.175 tol=2.61
2024-07-12 09:41:42,250 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=69.3 pTM=0.636 ipTM=0.166 tol=3.1
2024-07-12 09:42:17,463 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=69.1 pTM=0.635 ipTM=0.164 tol=3.24
2024-07-12 09:42:52,679 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=69.1 pTM=0.635 ipTM=0.162 tol=2.22
2024-07-12 09:43:27,848 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=68.9 pTM=0.634 ipTM=0.167 tol=2.13
2024-07-12 09:44:03,001 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=69.1 pTM=0.634 ipTM=0.165 tol=2.81
2024-07-12 09:44:38,204 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=69.3 pTM=0.636 ipTM=0.166 tol=2.62
2024-07-12 09:45:13,402 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=69.1 pTM=0.635 ipTM=0.169 tol=2.63
2024-07-12 09:45:48,600 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=69.2 pTM=0.636 ipTM=0.167 tol=2.28
2024-07-12 09:46:23,759 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=69.1 pTM=0.632 ipTM=0.165 tol=2.34
2024-07-12 09:46:58,962 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=69.1 pTM=0.635 ipTM=0.165 tol=2.68
2024-07-12 09:47:34,185 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=69.3 pTM=0.636 ipTM=0.165 tol=2.73
2024-07-12 09:48:09,380 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=69.1 pTM=0.636 ipTM=0.166 tol=2.25
2024-07-12 09:48:44,589 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=69.1 pTM=0.635 ipTM=0.163 tol=2.44
2024-07-12 09:49:19,826 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=69.2 pTM=0.636 ipTM=0.164 tol=1.8
2024-07-12 09:49:55,069 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=69.2 pTM=0.634 ipTM=0.165 tol=2.76
2024-07-12 09:50:30,327 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=69.3 pTM=0.635 ipTM=0.166 tol=4.68
2024-07-12 09:51:05,591 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=69.4 pTM=0.636 ipTM=0.166 tol=3.58
2024-07-12 09:51:40,843 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=69.4 pTM=0.638 ipTM=0.166 tol=6.77
2024-07-12 09:51:40,844 alphafold2_multimer_v3_model_5_seed_000 took 1091.4s (30 recycles)
2024-07-12 09:51:41,692 reranking models by 'multimer' metric
2024-07-12 09:52:01,304 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 09:53:39,262 Relaxation took 117.6s
2024-07-12 09:53:39,262 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=69.4 pTM=0.642 ipTM=0.383
2024-07-12 09:55:03,266 Relaxation took 84.0s
2024-07-12 09:55:03,266 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=69.5 pTM=0.633 ipTM=0.219
2024-07-12 09:56:43,647 Relaxation took 100.4s
2024-07-12 09:56:43,647 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=67.9 pTM=0.625 ipTM=0.191
2024-07-12 09:58:26,721 Relaxation took 103.1s
2024-07-12 09:58:26,721 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=69.4 pTM=0.642 ipTM=0.18
2024-07-12 10:00:29,866 Relaxation took 123.1s
2024-07-12 10:00:29,866 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=69.4 pTM=0.638 ipTM=0.166
2024-07-12 10:00:38,532 Done