2024-07-12 09:46:25,977 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 09:46:26,336 Running on GPU
2024-07-12 09:46:42,621 Found 6 citations for tools or databases
2024-07-12 09:46:42,621 Query 1/1: PRA22_UB2V2 (length 626)
2024-07-12 09:46:43,077 Sleeping for 10s. Reason: PENDING
2024-07-12 09:46:53,528 Sleeping for 5s. Reason: RUNNING
2024-07-12 09:46:58,988 Sleeping for 9s. Reason: RUNNING
2024-07-12 09:47:08,405 Sleeping for 8s. Reason: RUNNING
2024-07-12 09:47:16,833 Sleeping for 5s. Reason: RUNNING
2024-07-12 09:47:22,287 Sleeping for 9s. Reason: RUNNING
2024-07-12 09:47:31,744 Sleeping for 5s. Reason: RUNNING
2024-07-12 09:47:37,182 Sleeping for 7s. Reason: RUNNING
2024-07-12 09:47:44,601 Sleeping for 6s. Reason: RUNNING
2024-07-12 09:47:51,068 Sleeping for 5s. Reason: RUNNING
2024-07-12 09:47:58,010 Sleeping for 7s. Reason: PENDING
2024-07-12 09:48:05,436 Sleeping for 7s. Reason: RUNNING
2024-07-12 09:48:12,858 Sleeping for 6s. Reason: RUNNING
2024-07-12 09:48:19,280 Sleeping for 7s. Reason: RUNNING
2024-07-12 09:48:26,700 Sleeping for 9s. Reason: RUNNING
2024-07-12 09:48:37,771 Setting max_seq=508, max_extra_seq=2048
2024-07-12 09:51:56,673 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=74.9 pTM=0.664 ipTM=0.169
2024-07-12 09:52:04,664 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.1 pTM=0.664 ipTM=0.156 tol=5.42
2024-07-12 09:52:12,654 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=77.2 pTM=0.652 ipTM=0.13 tol=12
2024-07-12 09:52:20,644 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=77.6 pTM=0.655 ipTM=0.117 tol=7.95
2024-07-12 09:52:28,633 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=78.4 pTM=0.672 ipTM=0.167 tol=9.07
2024-07-12 09:52:36,618 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=78.4 pTM=0.671 ipTM=0.165 tol=0.403
2024-07-12 09:52:36,619 alphafold2_multimer_v3_model_1_seed_000 took 191.9s (5 recycles)
2024-07-12 09:52:44,945 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=75.8 pTM=0.687 ipTM=0.238
2024-07-12 09:52:53,006 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=78.9 pTM=0.745 ipTM=0.468 tol=3.05
2024-07-12 09:53:01,058 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=78.4 pTM=0.721 ipTM=0.383 tol=1.48
2024-07-12 09:53:09,104 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=78.1 pTM=0.709 ipTM=0.322 tol=1.27
2024-07-12 09:53:17,179 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=78.1 pTM=0.715 ipTM=0.32 tol=1.09
2024-07-12 09:53:25,231 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78.1 pTM=0.71 ipTM=0.303 tol=0.915
2024-07-12 09:53:33,296 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=78.2 pTM=0.713 ipTM=0.306 tol=0.728
2024-07-12 09:53:41,360 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78.3 pTM=0.712 ipTM=0.324 tol=1.13
2024-07-12 09:53:49,439 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78.2 pTM=0.714 ipTM=0.311 tol=0.763
2024-07-12 09:53:57,507 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.1 pTM=0.71 ipTM=0.306 tol=0.422
2024-07-12 09:53:57,508 alphafold2_multimer_v3_model_2_seed_000 took 80.6s (9 recycles)
2024-07-12 09:54:05,825 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.1 pTM=0.671 ipTM=0.148
2024-07-12 09:54:13,876 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.6 pTM=0.672 ipTM=0.136 tol=5.64
2024-07-12 09:54:21,928 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=77.7 pTM=0.686 ipTM=0.184 tol=4.8
2024-07-12 09:54:29,980 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=79.1 pTM=0.684 ipTM=0.169 tol=2.61
2024-07-12 09:54:38,037 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.6 pTM=0.691 ipTM=0.192 tol=2.18
2024-07-12 09:54:46,090 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=78.9 pTM=0.691 ipTM=0.198 tol=1.12
2024-07-12 09:54:54,159 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=78.6 pTM=0.694 ipTM=0.206 tol=1.07
2024-07-12 09:55:02,205 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=78.5 pTM=0.689 ipTM=0.202 tol=0.773
2024-07-12 09:55:10,271 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.8 pTM=0.697 ipTM=0.209 tol=0.895
2024-07-12 09:55:18,324 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=78.9 pTM=0.691 ipTM=0.212 tol=1.07
2024-07-12 09:55:26,390 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78.8 pTM=0.695 ipTM=0.213 tol=0.729
2024-07-12 09:55:34,450 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=78.8 pTM=0.693 ipTM=0.206 tol=0.909
2024-07-12 09:55:42,501 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=78.6 pTM=0.693 ipTM=0.213 tol=1.47
2024-07-12 09:55:50,554 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.4 pTM=0.695 ipTM=0.209 tol=1.99
2024-07-12 09:55:58,617 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.7 pTM=0.695 ipTM=0.207 tol=1.3
2024-07-12 09:56:06,668 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78 pTM=0.688 ipTM=0.203 tol=0.938
2024-07-12 09:56:14,738 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=79.1 pTM=0.696 ipTM=0.21 tol=1.19
2024-07-12 09:56:22,801 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.1 pTM=0.694 ipTM=0.207 tol=1.19
2024-07-12 09:56:30,861 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=79.3 pTM=0.693 ipTM=0.222 tol=2.21
2024-07-12 09:56:38,906 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=79.4 pTM=0.696 ipTM=0.223 tol=0.459
2024-07-12 09:56:38,906 alphafold2_multimer_v3_model_3_seed_000 took 161.1s (19 recycles)
2024-07-12 09:56:47,230 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.6 pTM=0.694 ipTM=0.27
2024-07-12 09:56:55,301 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.1 pTM=0.689 ipTM=0.23 tol=2.78
2024-07-12 09:57:03,343 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=73.6 pTM=0.676 ipTM=0.232 tol=1.83
2024-07-12 09:57:11,404 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=73.8 pTM=0.684 ipTM=0.239 tol=1.67
2024-07-12 09:57:19,460 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=74.2 pTM=0.684 ipTM=0.254 tol=1.27
2024-07-12 09:57:27,514 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=74.1 pTM=0.687 ipTM=0.256 tol=1.03
2024-07-12 09:57:35,559 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=74.2 pTM=0.679 ipTM=0.256 tol=0.736
2024-07-12 09:57:43,607 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=74.2 pTM=0.685 ipTM=0.26 tol=0.802
2024-07-12 09:57:51,641 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=74.3 pTM=0.676 ipTM=0.259 tol=1.29
2024-07-12 09:57:59,684 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=74.4 pTM=0.684 ipTM=0.265 tol=1.23
2024-07-12 09:58:07,734 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=74.9 pTM=0.68 ipTM=0.254 tol=1.56
2024-07-12 09:58:15,788 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=74.8 pTM=0.689 ipTM=0.277 tol=1.66
2024-07-12 09:58:23,839 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=74.6 pTM=0.682 ipTM=0.264 tol=2.48
2024-07-12 09:58:31,898 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=74.8 pTM=0.687 ipTM=0.253 tol=2.54
2024-07-12 09:58:39,954 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75 pTM=0.686 ipTM=0.254 tol=2.08
2024-07-12 09:58:48,028 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=74.7 pTM=0.688 ipTM=0.248 tol=1.81
2024-07-12 09:58:56,075 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=75.4 pTM=0.688 ipTM=0.264 tol=0.934
2024-07-12 09:59:04,125 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=74.7 pTM=0.685 ipTM=0.247 tol=0.754
2024-07-12 09:59:12,176 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=74.7 pTM=0.685 ipTM=0.266 tol=0.807
2024-07-12 09:59:20,229 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=75.2 pTM=0.693 ipTM=0.272 tol=0.851
2024-07-12 09:59:28,276 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=74.7 pTM=0.679 ipTM=0.252 tol=0.648
2024-07-12 09:59:36,324 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=74.4 pTM=0.687 ipTM=0.266 tol=0.739
2024-07-12 09:59:44,372 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=74.6 pTM=0.679 ipTM=0.254 tol=1.62
2024-07-12 09:59:52,419 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=74.9 pTM=0.682 ipTM=0.241 tol=1.07
2024-07-12 10:00:00,481 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=74.7 pTM=0.68 ipTM=0.248 tol=0.851
2024-07-12 10:00:08,520 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=74.4 pTM=0.681 ipTM=0.239 tol=1.04
2024-07-12 10:00:16,587 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=74.6 pTM=0.682 ipTM=0.246 tol=0.75
2024-07-12 10:00:24,652 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=74.2 pTM=0.678 ipTM=0.24 tol=0.757
2024-07-12 10:00:32,692 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=74.2 pTM=0.679 ipTM=0.245 tol=0.715
2024-07-12 10:00:40,747 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75 pTM=0.685 ipTM=0.236 tol=0.543
2024-07-12 10:00:48,804 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=74.8 pTM=0.682 ipTM=0.238 tol=0.539
2024-07-12 10:00:48,804 alphafold2_multimer_v3_model_4_seed_000 took 249.6s (30 recycles)
2024-07-12 10:00:57,121 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.8 pTM=0.692 ipTM=0.268
2024-07-12 10:01:05,186 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.4 pTM=0.668 ipTM=0.164 tol=3.98
2024-07-12 10:01:13,255 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=76.8 pTM=0.668 ipTM=0.151 tol=1.82
2024-07-12 10:01:21,329 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=76.9 pTM=0.666 ipTM=0.152 tol=2.4
2024-07-12 10:01:29,412 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.6 pTM=0.664 ipTM=0.143 tol=1.16
2024-07-12 10:01:37,480 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.2 pTM=0.663 ipTM=0.14 tol=2.23
2024-07-12 10:01:45,554 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.1 pTM=0.666 ipTM=0.138 tol=1.58
2024-07-12 10:01:53,613 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.9 pTM=0.665 ipTM=0.143 tol=2.82
2024-07-12 10:02:01,682 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.3 pTM=0.674 ipTM=0.143 tol=1.71
2024-07-12 10:02:09,730 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=77.8 pTM=0.671 ipTM=0.146 tol=0.448
2024-07-12 10:02:09,731 alphafold2_multimer_v3_model_5_seed_000 took 80.7s (9 recycles)
2024-07-12 10:02:09,984 reranking models by 'multimer' metric
2024-07-12 10:02:18,415 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 10:02:37,117 Relaxation took 27.1s
2024-07-12 10:02:37,117 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.1 pTM=0.71 ipTM=0.306
2024-07-12 10:02:52,215 Relaxation took 15.1s
2024-07-12 10:02:52,215 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=74.8 pTM=0.682 ipTM=0.238
2024-07-12 10:03:38,482 Relaxation took 46.3s
2024-07-12 10:03:38,482 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.4 pTM=0.696 ipTM=0.223
2024-07-12 10:03:57,534 Relaxation took 19.1s
2024-07-12 10:03:57,534 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.4 pTM=0.671 ipTM=0.165
2024-07-12 10:04:42,395 Relaxation took 44.9s
2024-07-12 10:04:42,395 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.8 pTM=0.671 ipTM=0.146
2024-07-12 10:04:43,584 Done