2024-07-12 09:58:18,991 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 09:58:19,324 Running on GPU
2024-07-12 09:58:25,130 Found 6 citations for tools or databases
2024-07-12 09:58:25,130 Query 1/1: PRAME_KCC2A (length 987)
2024-07-12 09:58:25,582 Sleeping for 5s. Reason: PENDING
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2024-07-12 10:02:20,722 Sleeping for 10s. Reason: RUNNING
2024-07-12 10:02:33,646 Sleeping for 8s. Reason: PENDING
2024-07-12 10:02:42,077 Sleeping for 7s. Reason: RUNNING
2024-07-12 10:02:49,482 Sleeping for 6s. Reason: RUNNING
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2024-07-12 10:04:31,557 Sleeping for 5s. Reason: RUNNING
2024-07-12 10:04:36,977 Sleeping for 5s. Reason: RUNNING
2024-07-12 10:04:46,156 Setting max_seq=508, max_extra_seq=2048
2024-07-12 10:08:25,092 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=70.7 pTM=0.53 ipTM=0.239
2024-07-12 10:08:45,513 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=73.9 pTM=0.579 ipTM=0.33 tol=9.93
2024-07-12 10:09:05,994 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.2 pTM=0.595 ipTM=0.384 tol=2.04
2024-07-12 10:09:26,509 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.7 pTM=0.589 ipTM=0.374 tol=1.3
2024-07-12 10:09:47,056 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=74.6 pTM=0.581 ipTM=0.362 tol=0.875
2024-07-12 10:10:07,620 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=74.3 pTM=0.571 ipTM=0.339 tol=0.861
2024-07-12 10:10:28,200 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=74.9 pTM=0.59 ipTM=0.386 tol=0.964
2024-07-12 10:10:48,767 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=74.2 pTM=0.579 ipTM=0.357 tol=0.69
2024-07-12 10:11:09,341 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=74.7 pTM=0.577 ipTM=0.345 tol=0.65
2024-07-12 10:11:29,911 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75 pTM=0.593 ipTM=0.384 tol=0.667
2024-07-12 10:11:50,481 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=74.8 pTM=0.583 ipTM=0.364 tol=0.633
2024-07-12 10:12:11,059 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=74.8 pTM=0.593 ipTM=0.393 tol=0.563
2024-07-12 10:12:31,632 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=75.1 pTM=0.599 ipTM=0.413 tol=0.57
2024-07-12 10:12:52,207 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=74.6 pTM=0.583 ipTM=0.369 tol=1.89
2024-07-12 10:13:12,780 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=74.8 pTM=0.585 ipTM=0.371 tol=1.02
2024-07-12 10:13:33,349 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=74.7 pTM=0.594 ipTM=0.397 tol=0.656
2024-07-12 10:13:53,930 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=75.1 pTM=0.594 ipTM=0.402 tol=0.563
2024-07-12 10:14:14,498 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=74.9 pTM=0.6 ipTM=0.417 tol=0.505
2024-07-12 10:14:35,074 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=74.8 pTM=0.593 ipTM=0.405 tol=0.448
2024-07-12 10:14:35,075 alphafold2_multimer_v3_model_1_seed_000 took 541.2s (18 recycles)
2024-07-12 10:14:56,312 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.4 pTM=0.535 ipTM=0.235
2024-07-12 10:15:16,965 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.5 pTM=0.534 ipTM=0.226 tol=2.5
2024-07-12 10:15:37,612 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.4 pTM=0.527 ipTM=0.225 tol=2.18
2024-07-12 10:15:58,250 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.1 pTM=0.542 ipTM=0.247 tol=2.23
2024-07-12 10:16:18,886 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.9 pTM=0.533 ipTM=0.227 tol=1.06
2024-07-12 10:16:39,534 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75 pTM=0.537 ipTM=0.242 tol=1.08
2024-07-12 10:17:00,174 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=75 pTM=0.535 ipTM=0.239 tol=1.12
2024-07-12 10:17:20,820 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75 pTM=0.535 ipTM=0.243 tol=0.559
2024-07-12 10:17:41,456 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.1 pTM=0.534 ipTM=0.234 tol=0.413
2024-07-12 10:17:41,457 alphafold2_multimer_v3_model_2_seed_000 took 185.8s (8 recycles)
2024-07-12 10:18:03,219 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.1 pTM=0.482 ipTM=0.162
2024-07-12 10:18:23,860 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.1 pTM=0.503 ipTM=0.174 tol=14.2
2024-07-12 10:18:44,482 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.5 pTM=0.503 ipTM=0.185 tol=6.14
2024-07-12 10:19:05,089 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.6 pTM=0.503 ipTM=0.186 tol=2.62
2024-07-12 10:19:25,689 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=73.6 pTM=0.509 ipTM=0.194 tol=2.35
2024-07-12 10:19:46,306 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.1 pTM=0.519 ipTM=0.212 tol=2.21
2024-07-12 10:20:06,921 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=73.8 pTM=0.511 ipTM=0.204 tol=1.01
2024-07-12 10:20:27,524 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=73.4 pTM=0.521 ipTM=0.224 tol=1.32
2024-07-12 10:20:48,141 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.8 pTM=0.51 ipTM=0.201 tol=2.66
2024-07-12 10:21:08,766 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=73.6 pTM=0.516 ipTM=0.21 tol=1.67
2024-07-12 10:21:29,379 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=73.7 pTM=0.508 ipTM=0.198 tol=0.607
2024-07-12 10:21:49,998 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=73.6 pTM=0.516 ipTM=0.213 tol=0.818
2024-07-12 10:22:10,600 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=73.4 pTM=0.506 ipTM=0.198 tol=0.875
2024-07-12 10:22:31,210 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=73.3 pTM=0.514 ipTM=0.209 tol=1.03
2024-07-12 10:22:51,850 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=73.2 pTM=0.501 ipTM=0.189 tol=1.08
2024-07-12 10:23:12,470 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=73.3 pTM=0.512 ipTM=0.208 tol=0.656
2024-07-12 10:23:33,082 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.6 pTM=0.512 ipTM=0.21 tol=1.65
2024-07-12 10:23:53,686 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.5 pTM=0.521 ipTM=0.225 tol=1.06
2024-07-12 10:24:14,305 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.2 pTM=0.509 ipTM=0.207 tol=0.738
2024-07-12 10:24:34,919 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=73.1 pTM=0.51 ipTM=0.205 tol=0.881
2024-07-12 10:24:55,540 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=73.1 pTM=0.506 ipTM=0.198 tol=0.842
2024-07-12 10:25:16,138 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=73.1 pTM=0.506 ipTM=0.198 tol=0.99
2024-07-12 10:25:36,741 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=73 pTM=0.507 ipTM=0.199 tol=0.833
2024-07-12 10:25:57,358 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=73.4 pTM=0.514 ipTM=0.209 tol=0.78
2024-07-12 10:26:17,962 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=73.4 pTM=0.514 ipTM=0.214 tol=1.26
2024-07-12 10:26:38,575 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=73.2 pTM=0.516 ipTM=0.214 tol=1.44
2024-07-12 10:26:59,192 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=73.3 pTM=0.507 ipTM=0.198 tol=0.82
2024-07-12 10:27:19,807 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=72.9 pTM=0.507 ipTM=0.2 tol=1.16
2024-07-12 10:27:40,418 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=72.8 pTM=0.502 ipTM=0.191 tol=0.656
2024-07-12 10:28:01,034 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=73.1 pTM=0.507 ipTM=0.198 tol=0.655
2024-07-12 10:28:21,654 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=73.2 pTM=0.505 ipTM=0.195 tol=0.925
2024-07-12 10:28:21,655 alphafold2_multimer_v3_model_3_seed_000 took 639.1s (30 recycles)
2024-07-12 10:28:42,890 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=74.2 pTM=0.675 ipTM=0.567
2024-07-12 10:29:03,505 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.5 pTM=0.674 ipTM=0.587 tol=5.05
2024-07-12 10:29:24,087 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=76.4 pTM=0.62 ipTM=0.435 tol=3.87
2024-07-12 10:29:44,665 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.1 pTM=0.601 ipTM=0.386 tol=1.74
2024-07-12 10:30:05,243 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=73.9 pTM=0.564 ipTM=0.295 tol=1.54
2024-07-12 10:30:25,827 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=74.3 pTM=0.553 ipTM=0.269 tol=1.13
2024-07-12 10:30:46,437 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.3 pTM=0.533 ipTM=0.229 tol=1.68
2024-07-12 10:31:07,058 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.6 pTM=0.534 ipTM=0.221 tol=1.37
2024-07-12 10:31:27,679 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=73.3 pTM=0.525 ipTM=0.207 tol=3.25
2024-07-12 10:31:48,294 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.1 pTM=0.528 ipTM=0.216 tol=3.24
2024-07-12 10:32:08,922 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.1 pTM=0.533 ipTM=0.225 tol=1.33
2024-07-12 10:32:29,551 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=72.9 pTM=0.531 ipTM=0.218 tol=1.79
2024-07-12 10:32:50,190 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.6 pTM=0.532 ipTM=0.22 tol=1.62
2024-07-12 10:33:10,805 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=72.8 pTM=0.53 ipTM=0.217 tol=0.561
2024-07-12 10:33:31,428 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=72.8 pTM=0.525 ipTM=0.208 tol=0.852
2024-07-12 10:33:52,067 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73 pTM=0.527 ipTM=0.212 tol=0.853
2024-07-12 10:34:12,684 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.3 pTM=0.532 ipTM=0.224 tol=1.13
2024-07-12 10:34:33,295 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=72.8 pTM=0.534 ipTM=0.227 tol=0.548
2024-07-12 10:34:53,906 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.6 pTM=0.53 ipTM=0.221 tol=0.542
2024-07-12 10:35:14,549 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=72.8 pTM=0.532 ipTM=0.221 tol=0.519
2024-07-12 10:35:35,194 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=73 pTM=0.528 ipTM=0.213 tol=0.916
2024-07-12 10:35:55,846 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72.9 pTM=0.529 ipTM=0.213 tol=0.893
2024-07-12 10:36:16,494 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=72.8 pTM=0.526 ipTM=0.215 tol=1.35
2024-07-12 10:36:37,143 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=73 pTM=0.534 ipTM=0.226 tol=0.491
2024-07-12 10:36:37,144 alphafold2_multimer_v3_model_4_seed_000 took 494.9s (23 recycles)
2024-07-12 10:36:58,356 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=68.8 pTM=0.504 ipTM=0.193
2024-07-12 10:37:19,025 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71 pTM=0.508 ipTM=0.183 tol=6.14
2024-07-12 10:37:39,686 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=70.7 pTM=0.509 ipTM=0.191 tol=4.56
2024-07-12 10:38:00,379 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=70.6 pTM=0.514 ipTM=0.193 tol=1.96
2024-07-12 10:38:21,058 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.1 pTM=0.513 ipTM=0.198 tol=3.24
2024-07-12 10:38:41,737 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.4 pTM=0.514 ipTM=0.198 tol=4.91
2024-07-12 10:39:02,402 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.1 pTM=0.51 ipTM=0.194 tol=2.74
2024-07-12 10:39:23,080 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72.3 pTM=0.513 ipTM=0.196 tol=2.96
2024-07-12 10:39:43,748 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=71.9 pTM=0.511 ipTM=0.195 tol=2.42
2024-07-12 10:40:04,423 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.4 pTM=0.511 ipTM=0.191 tol=1.58
2024-07-12 10:40:25,103 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.1 pTM=0.509 ipTM=0.194 tol=2.06
2024-07-12 10:40:45,790 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=72.2 pTM=0.512 ipTM=0.193 tol=2.78
2024-07-12 10:41:06,489 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.9 pTM=0.508 ipTM=0.194 tol=3.03
2024-07-12 10:41:27,167 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=72.2 pTM=0.511 ipTM=0.193 tol=3.85
2024-07-12 10:41:47,839 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.9 pTM=0.507 ipTM=0.191 tol=2.94
2024-07-12 10:42:08,523 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=72.6 pTM=0.508 ipTM=0.19 tol=3.4
2024-07-12 10:42:29,210 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=72.7 pTM=0.506 ipTM=0.191 tol=4.45
2024-07-12 10:42:49,858 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=72.6 pTM=0.511 ipTM=0.2 tol=3
2024-07-12 10:43:10,511 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=72.4 pTM=0.51 ipTM=0.202 tol=0.923
2024-07-12 10:43:31,157 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=72.4 pTM=0.513 ipTM=0.208 tol=0.84
2024-07-12 10:43:51,814 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=72.3 pTM=0.512 ipTM=0.201 tol=1.54
2024-07-12 10:44:12,464 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=72.5 pTM=0.512 ipTM=0.204 tol=1.71
2024-07-12 10:44:33,111 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=72.2 pTM=0.512 ipTM=0.202 tol=1.15
2024-07-12 10:44:53,745 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=72.5 pTM=0.515 ipTM=0.207 tol=1.39
2024-07-12 10:45:14,389 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=72.1 pTM=0.509 ipTM=0.199 tol=1.71
2024-07-12 10:45:35,033 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=72.3 pTM=0.516 ipTM=0.21 tol=1.84
2024-07-12 10:45:55,679 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=72.2 pTM=0.507 ipTM=0.194 tol=1.53
2024-07-12 10:46:16,324 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=72.3 pTM=0.513 ipTM=0.207 tol=1.09
2024-07-12 10:46:36,953 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=72 pTM=0.506 ipTM=0.19 tol=1.31
2024-07-12 10:46:57,588 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=72.4 pTM=0.509 ipTM=0.199 tol=1.12
2024-07-12 10:47:18,223 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=72.1 pTM=0.509 ipTM=0.196 tol=1.13
2024-07-12 10:47:18,224 alphafold2_multimer_v3_model_5_seed_000 took 640.5s (30 recycles)
2024-07-12 10:47:18,824 reranking models by 'multimer' metric
2024-07-12 10:47:20,808 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 10:48:32,271 Relaxation took 73.4s
2024-07-12 10:48:32,271 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.8 pTM=0.593 ipTM=0.405
2024-07-12 10:49:44,967 Relaxation took 72.7s
2024-07-12 10:49:44,967 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.1 pTM=0.534 ipTM=0.234
2024-07-12 10:51:23,663 Relaxation took 98.7s
2024-07-12 10:51:23,664 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73 pTM=0.534 ipTM=0.226
2024-07-12 10:52:27,449 Relaxation took 63.8s
2024-07-12 10:52:27,449 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.1 pTM=0.509 ipTM=0.196
2024-07-12 10:53:52,363 Relaxation took 84.9s
2024-07-12 10:53:52,363 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.2 pTM=0.505 ipTM=0.195
2024-07-12 10:53:56,897 Done