2024-07-12 11:15:09,445 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 11:15:09,780 Running on GPU
2024-07-12 11:15:13,892 Found 6 citations for tools or databases
2024-07-12 11:15:13,893 Query 1/1: PSA4_BIRC1 (length 1664)
2024-07-12 11:15:14,348 Sleeping for 6s. Reason: PENDING
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2024-07-12 11:20:28,575 Setting max_seq=508, max_extra_seq=2048
2024-07-12 11:23:59,291 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=75.4 pTM=0.68 ipTM=0.275
2024-07-12 11:25:22,648 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=76.6 pTM=0.688 ipTM=0.242 tol=3.56
2024-07-12 11:26:46,097 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=76.6 pTM=0.675 ipTM=0.241 tol=2.72
2024-07-12 11:28:09,555 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=76.8 pTM=0.679 ipTM=0.245 tol=1.45
2024-07-12 11:29:33,007 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=77.1 pTM=0.676 ipTM=0.248 tol=2.01
2024-07-12 11:30:56,459 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=77.7 pTM=0.678 ipTM=0.252 tol=1.42
2024-07-12 11:32:19,925 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=77.7 pTM=0.668 ipTM=0.252 tol=1.79
2024-07-12 11:33:43,391 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=77.8 pTM=0.669 ipTM=0.262 tol=1.61
2024-07-12 11:35:06,840 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=78.2 pTM=0.674 ipTM=0.268 tol=1.4
2024-07-12 11:36:30,282 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=78.4 pTM=0.678 ipTM=0.266 tol=0.611
2024-07-12 11:37:53,734 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=78.6 pTM=0.675 ipTM=0.276 tol=0.769
2024-07-12 11:39:17,170 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=78.6 pTM=0.678 ipTM=0.277 tol=0.603
2024-07-12 11:40:40,605 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=78.6 pTM=0.675 ipTM=0.282 tol=0.796
2024-07-12 11:42:04,031 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=78.8 pTM=0.672 ipTM=0.273 tol=0.549
2024-07-12 11:43:27,426 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=78.8 pTM=0.676 ipTM=0.281 tol=0.413
2024-07-12 11:43:27,427 alphafold2_multimer_v3_model_1_seed_000 took 1359.8s (14 recycles)
2024-07-12 11:44:52,605 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=74.4 pTM=0.685 ipTM=0.264
2024-07-12 11:46:16,124 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=76.1 pTM=0.695 ipTM=0.268 tol=4.74
2024-07-12 11:47:39,620 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=76.6 pTM=0.691 ipTM=0.285 tol=1.2
2024-07-12 11:49:03,135 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=77.3 pTM=0.704 ipTM=0.257 tol=3.6
2024-07-12 11:50:26,661 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=77.9 pTM=0.703 ipTM=0.237 tol=1.14
2024-07-12 11:51:50,167 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=78 pTM=0.71 ipTM=0.242 tol=1.24
2024-07-12 11:53:13,673 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77.8 pTM=0.699 ipTM=0.24 tol=2.38
2024-07-12 11:54:37,185 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=78 pTM=0.709 ipTM=0.238 tol=1.2
2024-07-12 11:56:00,700 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=78 pTM=0.705 ipTM=0.239 tol=1.41
2024-07-12 11:57:24,215 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=78.4 pTM=0.715 ipTM=0.243 tol=1.68
2024-07-12 11:58:47,687 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=78.3 pTM=0.711 ipTM=0.247 tol=0.981
2024-07-12 12:00:11,175 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=78.5 pTM=0.715 ipTM=0.246 tol=1.85
2024-07-12 12:01:34,663 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=78.4 pTM=0.711 ipTM=0.246 tol=1.65
2024-07-12 12:02:58,188 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=78.6 pTM=0.715 ipTM=0.246 tol=0.664
2024-07-12 12:04:21,727 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=78.2 pTM=0.708 ipTM=0.24 tol=0.784
2024-07-12 12:05:45,264 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=78.6 pTM=0.715 ipTM=0.246 tol=1.23
2024-07-12 12:07:08,801 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=78.6 pTM=0.715 ipTM=0.251 tol=0.804
2024-07-12 12:08:32,323 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=78.2 pTM=0.711 ipTM=0.248 tol=1.08
2024-07-12 12:09:55,803 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=78.4 pTM=0.716 ipTM=0.289 tol=2.82
2024-07-12 12:11:19,290 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=78.4 pTM=0.716 ipTM=0.277 tol=1.67
2024-07-12 12:12:42,737 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=77.6 pTM=0.71 ipTM=0.272 tol=5.28
2024-07-12 12:14:06,273 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=78.6 pTM=0.708 ipTM=0.233 tol=1.95
2024-07-12 12:15:29,811 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=78 pTM=0.704 ipTM=0.236 tol=1.57
2024-07-12 12:16:53,354 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=78.3 pTM=0.712 ipTM=0.242 tol=1.71
2024-07-12 12:18:16,879 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=77.9 pTM=0.709 ipTM=0.241 tol=1.11
2024-07-12 12:19:40,415 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=78.2 pTM=0.708 ipTM=0.24 tol=2.07
2024-07-12 12:21:03,964 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=78.4 pTM=0.712 ipTM=0.25 tol=1.27
2024-07-12 12:22:27,494 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=78.2 pTM=0.708 ipTM=0.247 tol=0.741
2024-07-12 12:23:51,046 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=78.1 pTM=0.708 ipTM=0.242 tol=0.864
2024-07-12 12:25:14,595 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=78.6 pTM=0.712 ipTM=0.246 tol=1.27
2024-07-12 12:26:38,112 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=78.1 pTM=0.71 ipTM=0.25 tol=0.859
2024-07-12 12:26:38,114 alphafold2_multimer_v3_model_2_seed_000 took 2589.1s (30 recycles)
2024-07-12 12:28:03,194 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=74.9 pTM=0.673 ipTM=0.274
2024-07-12 12:29:26,644 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.6 pTM=0.673 ipTM=0.265 tol=6.66
2024-07-12 12:30:50,082 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75 pTM=0.67 ipTM=0.252 tol=7.28
2024-07-12 12:32:13,527 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.8 pTM=0.684 ipTM=0.246 tol=6.62
2024-07-12 12:33:36,931 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=76.4 pTM=0.69 ipTM=0.253 tol=2.16
2024-07-12 12:35:00,345 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.8 pTM=0.699 ipTM=0.257 tol=1.17
2024-07-12 12:36:23,744 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.9 pTM=0.699 ipTM=0.259 tol=1.02
2024-07-12 12:37:47,171 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76.6 pTM=0.697 ipTM=0.247 tol=1.5
2024-07-12 12:39:10,586 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=76.6 pTM=0.695 ipTM=0.258 tol=1.77
2024-07-12 12:40:33,994 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=76.6 pTM=0.695 ipTM=0.25 tol=0.978
2024-07-12 12:41:57,417 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=77.1 pTM=0.697 ipTM=0.252 tol=1.1
2024-07-12 12:43:20,852 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=76.9 pTM=0.697 ipTM=0.244 tol=0.753
2024-07-12 12:44:44,268 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=77.1 pTM=0.695 ipTM=0.249 tol=0.488
2024-07-12 12:44:44,269 alphafold2_multimer_v3_model_3_seed_000 took 1084.5s (12 recycles)
2024-07-12 12:46:09,337 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.4 pTM=0.716 ipTM=0.373
2024-07-12 12:47:32,800 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.6 pTM=0.676 ipTM=0.247 tol=11.5
2024-07-12 12:48:56,204 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=76 pTM=0.692 ipTM=0.244 tol=2.45
2024-07-12 12:50:19,640 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=76.2 pTM=0.701 ipTM=0.247 tol=1.93
2024-07-12 12:51:43,051 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=76.3 pTM=0.707 ipTM=0.24 tol=1.23
2024-07-12 12:53:06,456 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=76.3 pTM=0.71 ipTM=0.256 tol=2.89
2024-07-12 12:54:29,841 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.1 pTM=0.713 ipTM=0.269 tol=2.61
2024-07-12 12:55:53,241 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76.6 pTM=0.713 ipTM=0.249 tol=2.74
2024-07-12 12:57:16,631 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=76.3 pTM=0.71 ipTM=0.252 tol=1.63
2024-07-12 12:58:40,014 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=76.1 pTM=0.719 ipTM=0.27 tol=4.07
2024-07-12 13:00:03,430 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=76.6 pTM=0.71 ipTM=0.24 tol=5.7
2024-07-12 13:01:26,835 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=76.6 pTM=0.708 ipTM=0.236 tol=2.51
2024-07-12 13:02:50,231 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.6 pTM=0.714 ipTM=0.268 tol=7.12
2024-07-12 13:04:13,661 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=76.6 pTM=0.709 ipTM=0.236 tol=9.03
2024-07-12 13:05:37,086 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=77 pTM=0.703 ipTM=0.232 tol=1.3
2024-07-12 13:07:00,442 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=75.8 pTM=0.716 ipTM=0.267 tol=8.62
2024-07-12 13:08:23,877 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=76.6 pTM=0.714 ipTM=0.246 tol=7.02
2024-07-12 13:09:47,297 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=76.7 pTM=0.713 ipTM=0.241 tol=1.12
2024-07-12 13:11:10,700 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.6 pTM=0.716 ipTM=0.266 tol=7.03
2024-07-12 13:12:34,124 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=76.3 pTM=0.714 ipTM=0.245 tol=7.34
2024-07-12 13:13:57,514 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=76.4 pTM=0.713 ipTM=0.237 tol=2.21
2024-07-12 13:15:20,926 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=75.5 pTM=0.716 ipTM=0.267 tol=7.27
2024-07-12 13:16:44,390 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=76.4 pTM=0.708 ipTM=0.237 tol=8.36
2024-07-12 13:18:07,810 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=76.9 pTM=0.712 ipTM=0.233 tol=1.13
2024-07-12 13:19:31,217 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=75.4 pTM=0.714 ipTM=0.257 tol=7.68
2024-07-12 13:20:54,643 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=76.3 pTM=0.723 ipTM=0.259 tol=3.09
2024-07-12 13:22:18,080 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=76.6 pTM=0.713 ipTM=0.245 tol=7.13
2024-07-12 13:23:41,518 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=76.8 pTM=0.712 ipTM=0.233 tol=2.41
2024-07-12 13:25:04,930 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.4 pTM=0.72 ipTM=0.27 tol=7.38
2024-07-12 13:26:28,376 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=76.5 pTM=0.719 ipTM=0.257 tol=3.81
2024-07-12 13:27:51,814 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=76.2 pTM=0.713 ipTM=0.243 tol=4.77
2024-07-12 13:27:51,816 alphafold2_multimer_v3_model_4_seed_000 took 2585.9s (30 recycles)
2024-07-12 13:29:17,586 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=74.4 pTM=0.678 ipTM=0.249
2024-07-12 13:30:41,071 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.9 pTM=0.652 ipTM=0.244 tol=6.93
2024-07-12 13:32:04,516 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.9 pTM=0.673 ipTM=0.248 tol=2.99
2024-07-12 13:33:27,966 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.3 pTM=0.677 ipTM=0.244 tol=1.98
2024-07-12 13:34:51,396 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.4 pTM=0.676 ipTM=0.245 tol=1.71
2024-07-12 13:36:14,800 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76.4 pTM=0.683 ipTM=0.243 tol=1.71
2024-07-12 13:37:38,238 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.2 pTM=0.671 ipTM=0.245 tol=1.53
2024-07-12 13:39:01,674 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.4 pTM=0.683 ipTM=0.244 tol=1.38
2024-07-12 13:40:25,099 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=76.3 pTM=0.673 ipTM=0.242 tol=0.837
2024-07-12 13:41:48,538 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=76.5 pTM=0.682 ipTM=0.237 tol=0.638
2024-07-12 13:43:11,978 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=76.3 pTM=0.673 ipTM=0.238 tol=0.59
2024-07-12 13:44:35,424 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=76.6 pTM=0.681 ipTM=0.237 tol=0.681
2024-07-12 13:45:58,858 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=76.4 pTM=0.67 ipTM=0.24 tol=0.494
2024-07-12 13:45:58,860 alphafold2_multimer_v3_model_5_seed_000 took 1084.7s (12 recycles)
2024-07-12 13:46:00,474 reranking models by 'multimer' metric
2024-07-12 13:46:02,298 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 13:47:18,324 Relaxation took 77.8s
2024-07-12 13:47:18,324 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=78.8 pTM=0.676 ipTM=0.281
2024-07-12 13:53:19,636 Relaxation took 361.3s
2024-07-12 13:53:19,636 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=78.1 pTM=0.71 ipTM=0.25
2024-07-12 13:54:50,274 Relaxation took 90.6s
2024-07-12 13:54:50,274 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.1 pTM=0.695 ipTM=0.249
2024-07-12 14:00:02,277 Relaxation took 312.0s
2024-07-12 14:00:02,278 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.2 pTM=0.713 ipTM=0.243
2024-07-12 14:03:18,734 Relaxation took 196.5s
2024-07-12 14:03:18,734 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.4 pTM=0.67 ipTM=0.24
2024-07-12 14:03:25,101 Done