2024-07-12 17:23:32,306 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 17:23:32,638 Running on GPU
2024-07-12 17:23:45,881 Found 6 citations for tools or databases
2024-07-12 17:23:45,881 Query 1/1: RHNO1_VPK9 (length 394)
2024-07-12 17:23:46,334 Sleeping for 9s. Reason: PENDING
2024-07-12 17:23:55,759 Sleeping for 6s. Reason: RUNNING
2024-07-12 17:24:02,222 Sleeping for 9s. Reason: RUNNING
2024-07-12 17:24:11,655 Sleeping for 7s. Reason: RUNNING
2024-07-12 17:24:20,552 Sleeping for 8s. Reason: PENDING
2024-07-12 17:24:28,971 Sleeping for 7s. Reason: RUNNING
2024-07-12 17:24:36,372 Sleeping for 5s. Reason: RUNNING
2024-07-12 17:24:43,098 Setting max_seq=508, max_extra_seq=2048
2024-07-12 17:27:52,975 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=38.9 pTM=0.327 ipTM=0.174
2024-07-12 17:27:57,008 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=39.5 pTM=0.34 ipTM=0.203 tol=8.63
2024-07-12 17:28:01,034 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=39.7 pTM=0.327 ipTM=0.146 tol=4.28
2024-07-12 17:28:05,052 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=39.2 pTM=0.336 ipTM=0.187 tol=13.7
2024-07-12 17:28:09,071 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=39 pTM=0.34 ipTM=0.177 tol=6.43
2024-07-12 17:28:13,091 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=38.9 pTM=0.342 ipTM=0.215 tol=3.77
2024-07-12 17:28:17,113 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=39.8 pTM=0.341 ipTM=0.255 tol=3.41
2024-07-12 17:28:21,139 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=40.4 pTM=0.345 ipTM=0.372 tol=3.36
2024-07-12 17:28:25,169 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=40.7 pTM=0.35 ipTM=0.459 tol=4.7
2024-07-12 17:28:29,198 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=42.8 pTM=0.35 ipTM=0.496 tol=5.6
2024-07-12 17:28:33,235 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=41.7 pTM=0.347 ipTM=0.492 tol=3.79
2024-07-12 17:28:37,272 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=42.5 pTM=0.358 ipTM=0.519 tol=3.66
2024-07-12 17:28:41,310 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=42.7 pTM=0.353 ipTM=0.519 tol=3.06
2024-07-12 17:28:45,348 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=42.1 pTM=0.352 ipTM=0.496 tol=2.82
2024-07-12 17:28:49,387 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=43.1 pTM=0.361 ipTM=0.532 tol=3.74
2024-07-12 17:28:53,424 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=43.4 pTM=0.354 ipTM=0.489 tol=3.47
2024-07-12 17:28:57,461 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=43.9 pTM=0.356 ipTM=0.523 tol=3.23
2024-07-12 17:29:01,497 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=43.2 pTM=0.354 ipTM=0.498 tol=2.09
2024-07-12 17:29:05,534 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=43.8 pTM=0.356 ipTM=0.503 tol=2.47
2024-07-12 17:29:09,574 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=43.6 pTM=0.35 ipTM=0.454 tol=3.42
2024-07-12 17:29:13,610 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=42.5 pTM=0.351 ipTM=0.483 tol=4.14
2024-07-12 17:29:17,651 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=42.5 pTM=0.348 ipTM=0.489 tol=2.07
2024-07-12 17:29:21,691 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=42.8 pTM=0.359 ipTM=0.512 tol=2.07
2024-07-12 17:29:25,725 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=42.4 pTM=0.35 ipTM=0.462 tol=1.92
2024-07-12 17:29:29,762 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=43 pTM=0.351 ipTM=0.505 tol=3.29
2024-07-12 17:29:33,799 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=43.2 pTM=0.346 ipTM=0.441 tol=2.88
2024-07-12 17:29:37,834 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=42.2 pTM=0.348 ipTM=0.477 tol=4.77
2024-07-12 17:29:41,870 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=42.4 pTM=0.348 ipTM=0.468 tol=3.26
2024-07-12 17:29:45,908 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=42.4 pTM=0.349 ipTM=0.494 tol=3.42
2024-07-12 17:29:49,948 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=42.5 pTM=0.354 ipTM=0.488 tol=2.43
2024-07-12 17:29:53,984 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=43.1 pTM=0.353 ipTM=0.516 tol=4.24
2024-07-12 17:29:53,984 alphafold2_multimer_v3_model_1_seed_000 took 268.8s (30 recycles)
2024-07-12 17:29:58,124 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=39.7 pTM=0.351 ipTM=0.44
2024-07-12 17:30:02,157 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=40.2 pTM=0.342 ipTM=0.211 tol=9.79
2024-07-12 17:30:06,196 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=41 pTM=0.332 ipTM=0.159 tol=8.1
2024-07-12 17:30:10,237 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=42.2 pTM=0.335 ipTM=0.125 tol=7.44
2024-07-12 17:30:14,280 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=42.1 pTM=0.336 ipTM=0.129 tol=4.96
2024-07-12 17:30:18,322 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=41.3 pTM=0.338 ipTM=0.144 tol=7.02
2024-07-12 17:30:22,362 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=42.1 pTM=0.34 ipTM=0.139 tol=4.07
2024-07-12 17:30:26,404 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=42.3 pTM=0.344 ipTM=0.134 tol=3.77
2024-07-12 17:30:30,444 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=41.9 pTM=0.348 ipTM=0.142 tol=5.08
2024-07-12 17:30:34,485 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=42.9 pTM=0.344 ipTM=0.134 tol=5.02
2024-07-12 17:30:38,527 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=42.7 pTM=0.359 ipTM=0.39 tol=11.9
2024-07-12 17:30:42,576 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=43.9 pTM=0.37 ipTM=0.362 tol=13.6
2024-07-12 17:30:46,621 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=44.2 pTM=0.364 ipTM=0.329 tol=5.64
2024-07-12 17:30:50,666 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=43.5 pTM=0.363 ipTM=0.306 tol=3.72
2024-07-12 17:30:54,712 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=43.2 pTM=0.362 ipTM=0.308 tol=5.97
2024-07-12 17:30:58,757 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=43.9 pTM=0.362 ipTM=0.293 tol=3.39
2024-07-12 17:31:02,803 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=45.3 pTM=0.373 ipTM=0.392 tol=3.32
2024-07-12 17:31:06,854 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=43.8 pTM=0.365 ipTM=0.308 tol=3.77
2024-07-12 17:31:10,895 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=44.7 pTM=0.37 ipTM=0.377 tol=2.69
2024-07-12 17:31:14,938 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=43.9 pTM=0.363 ipTM=0.28 tol=3.42
2024-07-12 17:31:18,978 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=45.4 pTM=0.379 ipTM=0.453 tol=2.28
2024-07-12 17:31:23,021 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=44.6 pTM=0.366 ipTM=0.309 tol=2.62
2024-07-12 17:31:27,063 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=44.7 pTM=0.373 ipTM=0.343 tol=2.76
2024-07-12 17:31:31,104 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=44.7 pTM=0.373 ipTM=0.34 tol=2.14
2024-07-12 17:31:35,145 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=44.5 pTM=0.369 ipTM=0.331 tol=1.27
2024-07-12 17:31:39,185 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=44.1 pTM=0.365 ipTM=0.321 tol=1.47
2024-07-12 17:31:43,226 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=44.5 pTM=0.368 ipTM=0.357 tol=2.02
2024-07-12 17:31:47,268 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=43.7 pTM=0.367 ipTM=0.317 tol=3.17
2024-07-12 17:31:51,309 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=43.9 pTM=0.37 ipTM=0.36 tol=3.26
2024-07-12 17:31:55,349 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=43.6 pTM=0.369 ipTM=0.321 tol=1.97
2024-07-12 17:31:59,391 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=43.6 pTM=0.366 ipTM=0.329 tol=2.24
2024-07-12 17:31:59,392 alphafold2_multimer_v3_model_2_seed_000 took 125.3s (30 recycles)
2024-07-12 17:32:03,550 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=39.9 pTM=0.339 ipTM=0.191
2024-07-12 17:32:07,588 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=39.2 pTM=0.335 ipTM=0.168 tol=16.7
2024-07-12 17:32:11,629 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=38.8 pTM=0.329 ipTM=0.127 tol=7.44
2024-07-12 17:32:15,666 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=39 pTM=0.328 ipTM=0.137 tol=7.34
2024-07-12 17:32:19,701 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=38.4 pTM=0.334 ipTM=0.167 tol=10.2
2024-07-12 17:32:23,737 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=38.5 pTM=0.333 ipTM=0.18 tol=6.37
2024-07-12 17:32:27,776 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=38.6 pTM=0.326 ipTM=0.153 tol=7.83
2024-07-12 17:32:31,814 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=39.2 pTM=0.338 ipTM=0.199 tol=4.51
2024-07-12 17:32:35,861 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=39.4 pTM=0.34 ipTM=0.197 tol=3.76
2024-07-12 17:32:39,902 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=40 pTM=0.333 ipTM=0.158 tol=6.61
2024-07-12 17:32:43,943 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=39.4 pTM=0.339 ipTM=0.198 tol=3.72
2024-07-12 17:32:47,986 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=39.5 pTM=0.333 ipTM=0.157 tol=4.33
2024-07-12 17:32:52,029 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=39.8 pTM=0.338 ipTM=0.208 tol=3.31
2024-07-12 17:32:56,072 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=39.3 pTM=0.338 ipTM=0.177 tol=4.09
2024-07-12 17:33:00,116 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=39 pTM=0.335 ipTM=0.187 tol=2.83
2024-07-12 17:33:04,156 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=39.3 pTM=0.336 ipTM=0.218 tol=3
2024-07-12 17:33:08,200 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=39.1 pTM=0.335 ipTM=0.152 tol=3.16
2024-07-12 17:33:12,239 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=39.6 pTM=0.344 ipTM=0.22 tol=2.91
2024-07-12 17:33:16,284 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=39.9 pTM=0.336 ipTM=0.157 tol=5.41
2024-07-12 17:33:20,328 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=39.6 pTM=0.339 ipTM=0.197 tol=3.81
2024-07-12 17:33:24,378 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=39.3 pTM=0.333 ipTM=0.144 tol=4.35
2024-07-12 17:33:28,420 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=39.5 pTM=0.343 ipTM=0.293 tol=4.36
2024-07-12 17:33:32,469 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=39.8 pTM=0.344 ipTM=0.164 tol=3.76
2024-07-12 17:33:36,513 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=39.3 pTM=0.338 ipTM=0.228 tol=4.18
2024-07-12 17:33:40,557 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=39.5 pTM=0.34 ipTM=0.16 tol=3.04
2024-07-12 17:33:44,600 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=39.7 pTM=0.341 ipTM=0.225 tol=3.23
2024-07-12 17:33:48,643 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=39.5 pTM=0.337 ipTM=0.186 tol=5.17
2024-07-12 17:33:52,690 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=39 pTM=0.338 ipTM=0.188 tol=4.59
2024-07-12 17:33:56,736 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=38.7 pTM=0.333 ipTM=0.17 tol=3.32
2024-07-12 17:34:00,779 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=39.5 pTM=0.332 ipTM=0.162 tol=4.16
2024-07-12 17:34:04,825 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=39.6 pTM=0.342 ipTM=0.178 tol=3.58
2024-07-12 17:34:04,825 alphafold2_multimer_v3_model_3_seed_000 took 125.3s (30 recycles)
2024-07-12 17:34:08,973 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=38.8 pTM=0.327 ipTM=0.202
2024-07-12 17:34:13,003 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=37.8 pTM=0.322 ipTM=0.169 tol=15.1
2024-07-12 17:34:17,029 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=38.1 pTM=0.333 ipTM=0.182 tol=9.4
2024-07-12 17:34:21,055 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=38.8 pTM=0.329 ipTM=0.176 tol=10.1
2024-07-12 17:34:25,085 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=38.5 pTM=0.328 ipTM=0.186 tol=6.64
2024-07-12 17:34:29,117 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=39 pTM=0.322 ipTM=0.138 tol=7.86
2024-07-12 17:34:33,157 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=40.6 pTM=0.325 ipTM=0.116 tol=7.03
2024-07-12 17:34:37,197 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=41.5 pTM=0.334 ipTM=0.124 tol=7.31
2024-07-12 17:34:41,238 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=41.5 pTM=0.342 ipTM=0.148 tol=8.19
2024-07-12 17:34:45,278 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=42.8 pTM=0.346 ipTM=0.136 tol=11.7
2024-07-12 17:34:49,313 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=41.9 pTM=0.346 ipTM=0.145 tol=3.89
2024-07-12 17:34:53,351 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=42 pTM=0.35 ipTM=0.152 tol=3.33
2024-07-12 17:34:57,390 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=42.1 pTM=0.351 ipTM=0.153 tol=1.94
2024-07-12 17:35:01,427 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=41.6 pTM=0.35 ipTM=0.195 tol=4.43
2024-07-12 17:35:05,468 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=42 pTM=0.35 ipTM=0.176 tol=4.78
2024-07-12 17:35:09,506 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=42 pTM=0.353 ipTM=0.152 tol=3.51
2024-07-12 17:35:13,541 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=42.2 pTM=0.352 ipTM=0.312 tol=3.36
2024-07-12 17:35:17,578 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=41.9 pTM=0.352 ipTM=0.216 tol=3.2
2024-07-12 17:35:21,614 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=42.3 pTM=0.352 ipTM=0.19 tol=2.76
2024-07-12 17:35:25,648 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=42 pTM=0.354 ipTM=0.264 tol=3.29
2024-07-12 17:35:29,685 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=42.6 pTM=0.36 ipTM=0.292 tol=2.88
2024-07-12 17:35:33,721 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=42.2 pTM=0.354 ipTM=0.245 tol=4.34
2024-07-12 17:35:37,761 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=42.6 pTM=0.356 ipTM=0.245 tol=4.54
2024-07-12 17:35:41,798 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=41.9 pTM=0.356 ipTM=0.239 tol=3.91
2024-07-12 17:35:45,835 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=42.4 pTM=0.357 ipTM=0.289 tol=2.84
2024-07-12 17:35:49,869 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=41.9 pTM=0.353 ipTM=0.19 tol=3.75
2024-07-12 17:35:53,904 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=42.4 pTM=0.355 ipTM=0.246 tol=3.22
2024-07-12 17:35:57,938 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=41.8 pTM=0.357 ipTM=0.332 tol=3
2024-07-12 17:36:01,975 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=41.9 pTM=0.351 ipTM=0.216 tol=3.22
2024-07-12 17:36:06,009 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=42 pTM=0.359 ipTM=0.308 tol=3.1
2024-07-12 17:36:10,047 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=42 pTM=0.352 ipTM=0.252 tol=2.66
2024-07-12 17:36:10,048 alphafold2_multimer_v3_model_4_seed_000 took 125.1s (30 recycles)
2024-07-12 17:36:14,212 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=38.4 pTM=0.33 ipTM=0.256
2024-07-12 17:36:18,257 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=37.1 pTM=0.317 ipTM=0.17 tol=8.03
2024-07-12 17:36:22,304 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=38 pTM=0.317 ipTM=0.165 tol=4.66
2024-07-12 17:36:26,345 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=37.6 pTM=0.309 ipTM=0.141 tol=3.65
2024-07-12 17:36:30,389 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=37 pTM=0.306 ipTM=0.151 tol=3.41
2024-07-12 17:36:34,438 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=37 pTM=0.308 ipTM=0.136 tol=2.89
2024-07-12 17:36:38,490 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=36.9 pTM=0.311 ipTM=0.159 tol=4.32
2024-07-12 17:36:42,540 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=38.5 pTM=0.333 ipTM=0.368 tol=5.21
2024-07-12 17:36:46,590 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=39.5 pTM=0.344 ipTM=0.498 tol=4.4
2024-07-12 17:36:50,637 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=41.1 pTM=0.345 ipTM=0.457 tol=4.71
2024-07-12 17:36:54,683 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=39.2 pTM=0.332 ipTM=0.399 tol=3.81
2024-07-12 17:36:58,733 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=40 pTM=0.344 ipTM=0.463 tol=7.33
2024-07-12 17:37:02,789 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=40 pTM=0.336 ipTM=0.385 tol=6.3
2024-07-12 17:37:06,846 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=39.3 pTM=0.336 ipTM=0.371 tol=4.94
2024-07-12 17:37:10,905 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=39.4 pTM=0.335 ipTM=0.374 tol=3.43
2024-07-12 17:37:14,964 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=42.7 pTM=0.37 ipTM=0.55 tol=5.16
2024-07-12 17:37:19,024 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=42.4 pTM=0.355 ipTM=0.466 tol=4.9
2024-07-12 17:37:23,092 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=44.2 pTM=0.376 ipTM=0.57 tol=4.96
2024-07-12 17:37:27,154 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=43.8 pTM=0.367 ipTM=0.539 tol=5.1
2024-07-12 17:37:31,218 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=43.4 pTM=0.365 ipTM=0.535 tol=5.76
2024-07-12 17:37:35,284 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=43.2 pTM=0.365 ipTM=0.521 tol=5.06
2024-07-12 17:37:39,341 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=42.8 pTM=0.359 ipTM=0.52 tol=3.14
2024-07-12 17:37:43,403 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=42 pTM=0.352 ipTM=0.466 tol=4.32
2024-07-12 17:37:47,464 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=43.2 pTM=0.367 ipTM=0.545 tol=3.34
2024-07-12 17:37:51,525 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=41.8 pTM=0.348 ipTM=0.447 tol=3.64
2024-07-12 17:37:55,583 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=42.7 pTM=0.358 ipTM=0.508 tol=2.65
2024-07-12 17:37:59,645 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=41.7 pTM=0.35 ipTM=0.445 tol=3.7
2024-07-12 17:38:03,708 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=43.2 pTM=0.369 ipTM=0.542 tol=3.59
2024-07-12 17:38:07,766 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=41.1 pTM=0.345 ipTM=0.415 tol=6.9
2024-07-12 17:38:11,825 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=42.5 pTM=0.366 ipTM=0.539 tol=3.72
2024-07-12 17:38:15,886 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=41.6 pTM=0.352 ipTM=0.443 tol=4.89
2024-07-12 17:38:15,887 alphafold2_multimer_v3_model_5_seed_000 took 125.7s (30 recycles)
2024-07-12 17:38:16,007 reranking models by 'multimer' metric
2024-07-12 17:38:16,422 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 17:38:54,257 Relaxation took 38.2s
2024-07-12 17:38:54,257 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=43.1 pTM=0.353 ipTM=0.516
2024-07-12 17:39:12,447 Relaxation took 18.2s
2024-07-12 17:39:12,447 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=41.6 pTM=0.352 ipTM=0.443
2024-07-12 17:39:31,887 Relaxation took 19.4s
2024-07-12 17:39:31,887 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=43.6 pTM=0.366 ipTM=0.329
2024-07-12 17:39:55,134 Relaxation took 23.2s
2024-07-12 17:39:55,134 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=42 pTM=0.352 ipTM=0.252
2024-07-12 17:40:14,486 Relaxation took 19.4s
2024-07-12 17:40:14,486 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=39.6 pTM=0.342 ipTM=0.178
2024-07-12 17:40:15,427 Done