2024-07-12 17:31:55,017 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 17:31:55,370 Running on GPU
2024-07-12 17:32:08,182 Found 6 citations for tools or databases
2024-07-12 17:32:08,183 Query 1/1: RHOD_ENTP8 (length 705)
2024-07-12 17:32:08,643 Sleeping for 7s. Reason: PENDING
2024-07-12 17:32:16,054 Sleeping for 5s. Reason: RUNNING
2024-07-12 17:32:21,469 Sleeping for 8s. Reason: RUNNING
2024-07-12 17:32:29,896 Sleeping for 7s. Reason: RUNNING
2024-07-12 17:32:37,335 Sleeping for 7s. Reason: RUNNING
2024-07-12 17:32:44,766 Sleeping for 10s. Reason: RUNNING
2024-07-12 17:32:55,199 Sleeping for 7s. Reason: RUNNING
2024-07-12 17:33:02,632 Sleeping for 8s. Reason: RUNNING
2024-07-12 17:33:11,045 Sleeping for 8s. Reason: RUNNING
2024-07-12 17:33:22,924 Sleeping for 9s. Reason: PENDING
2024-07-12 17:33:32,345 Sleeping for 8s. Reason: RUNNING
2024-07-12 17:33:40,760 Sleeping for 8s. Reason: RUNNING
2024-07-12 17:33:49,179 Sleeping for 10s. Reason: RUNNING
2024-07-12 17:33:59,599 Sleeping for 5s. Reason: RUNNING
2024-07-12 17:34:05,040 Sleeping for 7s. Reason: RUNNING
2024-07-12 17:34:17,483 Setting max_seq=508, max_extra_seq=2048
2024-07-12 17:37:52,763 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=82.6 pTM=0.653 ipTM=0.248
2024-07-12 17:38:02,769 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=82.9 pTM=0.645 ipTM=0.254 tol=1.61
2024-07-12 17:38:12,795 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.9 pTM=0.655 ipTM=0.292 tol=2.59
2024-07-12 17:38:22,854 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=84.5 pTM=0.675 ipTM=0.342 tol=1.08
2024-07-12 17:38:32,913 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=84.2 pTM=0.666 ipTM=0.326 tol=0.843
2024-07-12 17:38:42,996 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=84.4 pTM=0.677 ipTM=0.36 tol=1.09
2024-07-12 17:38:53,094 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=84.1 pTM=0.673 ipTM=0.356 tol=1.02
2024-07-12 17:39:03,201 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=84.6 pTM=0.687 ipTM=0.398 tol=1.34
2024-07-12 17:39:13,321 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=84.2 pTM=0.677 ipTM=0.363 tol=0.841
2024-07-12 17:39:23,446 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=83.9 pTM=0.674 ipTM=0.364 tol=0.614
2024-07-12 17:39:33,580 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=84.2 pTM=0.675 ipTM=0.354 tol=0.519
2024-07-12 17:39:43,702 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=83.8 pTM=0.666 ipTM=0.336 tol=0.38
2024-07-12 17:39:43,702 alphafold2_multimer_v3_model_1_seed_000 took 282.2s (11 recycles)
2024-07-12 17:39:54,168 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=81.6 pTM=0.66 ipTM=0.261
2024-07-12 17:40:04,316 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=85.1 pTM=0.712 ipTM=0.483 tol=6.28
2024-07-12 17:40:14,455 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.7 pTM=0.688 ipTM=0.397 tol=1.5
2024-07-12 17:40:24,599 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=83.6 pTM=0.655 ipTM=0.297 tol=2.55
2024-07-12 17:40:34,736 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.1 pTM=0.677 ipTM=0.371 tol=2.62
2024-07-12 17:40:44,889 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.8 pTM=0.687 ipTM=0.398 tol=0.664
2024-07-12 17:40:55,033 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84 pTM=0.668 ipTM=0.347 tol=0.711
2024-07-12 17:41:05,198 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.8 pTM=0.68 ipTM=0.376 tol=0.64
2024-07-12 17:41:15,341 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.3 pTM=0.676 ipTM=0.371 tol=0.258
2024-07-12 17:41:15,342 alphafold2_multimer_v3_model_2_seed_000 took 91.3s (8 recycles)
2024-07-12 17:41:25,809 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=82.8 pTM=0.685 ipTM=0.379
2024-07-12 17:41:35,992 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=83.8 pTM=0.663 ipTM=0.292 tol=5.74
2024-07-12 17:41:46,146 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=83.9 pTM=0.67 ipTM=0.337 tol=1.9
2024-07-12 17:41:56,283 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=83.4 pTM=0.661 ipTM=0.322 tol=0.521
2024-07-12 17:42:06,438 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=83.8 pTM=0.667 ipTM=0.34 tol=1.06
2024-07-12 17:42:16,588 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=83.6 pTM=0.67 ipTM=0.348 tol=0.378
2024-07-12 17:42:16,588 alphafold2_multimer_v3_model_3_seed_000 took 60.9s (5 recycles)
2024-07-12 17:42:27,087 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=81.6 pTM=0.667 ipTM=0.327
2024-07-12 17:42:37,303 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=83.3 pTM=0.645 ipTM=0.251 tol=3.74
2024-07-12 17:42:47,504 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=86.1 pTM=0.754 ipTM=0.614 tol=3.59
2024-07-12 17:42:57,714 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=85.5 pTM=0.718 ipTM=0.521 tol=1.3
2024-07-12 17:43:07,928 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=85.1 pTM=0.707 ipTM=0.476 tol=0.854
2024-07-12 17:43:18,139 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.3 pTM=0.679 ipTM=0.399 tol=0.516
2024-07-12 17:43:28,359 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=85.1 pTM=0.72 ipTM=0.507 tol=0.752
2024-07-12 17:43:38,569 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.9 pTM=0.689 ipTM=0.427 tol=1.04
2024-07-12 17:43:48,786 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=84.4 pTM=0.691 ipTM=0.422 tol=0.626
2024-07-12 17:43:59,007 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=84 pTM=0.675 ipTM=0.38 tol=0.604
2024-07-12 17:44:09,220 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=84 pTM=0.691 ipTM=0.422 tol=0.801
2024-07-12 17:44:19,431 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=83.9 pTM=0.677 ipTM=0.389 tol=0.812
2024-07-12 17:44:29,645 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=83.8 pTM=0.679 ipTM=0.375 tol=0.881
2024-07-12 17:44:39,863 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=83.8 pTM=0.67 ipTM=0.361 tol=0.567
2024-07-12 17:44:50,089 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=84.6 pTM=0.7 ipTM=0.44 tol=0.664
2024-07-12 17:45:00,307 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=84.2 pTM=0.674 ipTM=0.38 tol=0.886
2024-07-12 17:45:10,526 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=83.1 pTM=0.672 ipTM=0.368 tol=0.936
2024-07-12 17:45:20,727 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=84.1 pTM=0.676 ipTM=0.385 tol=0.692
2024-07-12 17:45:30,925 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=83.7 pTM=0.685 ipTM=0.405 tol=0.342
2024-07-12 17:45:30,926 alphafold2_multimer_v3_model_4_seed_000 took 194.0s (18 recycles)
2024-07-12 17:45:41,407 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=81.6 pTM=0.691 ipTM=0.397
2024-07-12 17:45:51,594 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=82.9 pTM=0.669 ipTM=0.314 tol=1.02
2024-07-12 17:46:01,783 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=82.1 pTM=0.66 ipTM=0.291 tol=2.32
2024-07-12 17:46:11,961 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=82.5 pTM=0.665 ipTM=0.295 tol=0.649
2024-07-12 17:46:22,146 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=82.1 pTM=0.661 ipTM=0.293 tol=0.956
2024-07-12 17:46:32,331 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=82 pTM=0.658 ipTM=0.291 tol=1.02
2024-07-12 17:46:42,499 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=81.8 pTM=0.661 ipTM=0.295 tol=1.66
2024-07-12 17:46:52,687 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=81.8 pTM=0.657 ipTM=0.289 tol=1.81
2024-07-12 17:47:02,873 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=81.5 pTM=0.66 ipTM=0.293 tol=1.79
2024-07-12 17:47:13,056 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=81.6 pTM=0.661 ipTM=0.299 tol=1.43
2024-07-12 17:47:23,233 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=81.4 pTM=0.657 ipTM=0.29 tol=1.39
2024-07-12 17:47:33,430 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=81.7 pTM=0.664 ipTM=0.308 tol=1.6
2024-07-12 17:47:43,605 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=81.6 pTM=0.659 ipTM=0.292 tol=1.88
2024-07-12 17:47:53,801 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=81.4 pTM=0.658 ipTM=0.291 tol=1.02
2024-07-12 17:48:03,988 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=81.4 pTM=0.655 ipTM=0.277 tol=1.01
2024-07-12 17:48:14,191 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=81.4 pTM=0.654 ipTM=0.28 tol=1.18
2024-07-12 17:48:24,388 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=81.1 pTM=0.653 ipTM=0.275 tol=1.43
2024-07-12 17:48:34,592 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=81.6 pTM=0.666 ipTM=0.307 tol=2.11
2024-07-12 17:48:44,765 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=81.3 pTM=0.657 ipTM=0.29 tol=1.82
2024-07-12 17:48:54,954 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=81.2 pTM=0.653 ipTM=0.282 tol=1.48
2024-07-12 17:49:05,126 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=81.2 pTM=0.657 ipTM=0.294 tol=1.2
2024-07-12 17:49:15,304 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=81.2 pTM=0.657 ipTM=0.295 tol=1.21
2024-07-12 17:49:25,480 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=81.2 pTM=0.658 ipTM=0.291 tol=1.69
2024-07-12 17:49:35,676 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=81.4 pTM=0.662 ipTM=0.307 tol=1.55
2024-07-12 17:49:45,857 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=81.2 pTM=0.655 ipTM=0.289 tol=1.25
2024-07-12 17:49:56,045 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=81.6 pTM=0.665 ipTM=0.313 tol=1.51
2024-07-12 17:50:06,228 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=81.4 pTM=0.661 ipTM=0.295 tol=1.93
2024-07-12 17:50:16,417 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=81.3 pTM=0.66 ipTM=0.302 tol=1.94
2024-07-12 17:50:26,601 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=80.9 pTM=0.655 ipTM=0.291 tol=1.64
2024-07-12 17:50:36,796 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=81.6 pTM=0.669 ipTM=0.324 tol=1.72
2024-07-12 17:50:46,978 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=81.3 pTM=0.656 ipTM=0.291 tol=1.9
2024-07-12 17:50:46,978 alphafold2_multimer_v3_model_5_seed_000 took 315.7s (30 recycles)
2024-07-12 17:50:47,292 reranking models by 'multimer' metric
2024-07-12 17:51:03,847 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 17:51:53,869 Relaxation took 66.6s
2024-07-12 17:51:53,869 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.7 pTM=0.685 ipTM=0.405
2024-07-12 17:52:12,718 Relaxation took 18.8s
2024-07-12 17:52:12,718 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=84.3 pTM=0.676 ipTM=0.371
2024-07-12 17:52:48,069 Relaxation took 35.3s
2024-07-12 17:52:48,069 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=83.6 pTM=0.67 ipTM=0.348
2024-07-12 17:53:12,548 Relaxation took 24.5s
2024-07-12 17:53:12,548 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=83.8 pTM=0.666 ipTM=0.336
2024-07-12 17:53:53,476 Relaxation took 40.9s
2024-07-12 17:53:53,476 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=81.3 pTM=0.656 ipTM=0.291
2024-07-12 17:53:54,769 Done