2024-07-12 19:07:47,403 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 19:07:47,723 Running on GPU
2024-07-12 19:07:58,260 Found 6 citations for tools or databases
2024-07-12 19:07:58,260 Query 1/1: RNAS7_ORN4C (length 472)
2024-07-12 19:08:01,498 Sleeping for 9s. Reason: PENDING
2024-07-12 19:08:10,919 Sleeping for 5s. Reason: RUNNING
2024-07-12 19:08:16,352 Sleeping for 7s. Reason: RUNNING
2024-07-12 19:08:23,780 Sleeping for 10s. Reason: RUNNING
2024-07-12 19:08:34,216 Sleeping for 5s. Reason: RUNNING
2024-07-12 19:08:39,633 Sleeping for 5s. Reason: RUNNING
2024-07-12 19:08:45,088 Sleeping for 9s. Reason: RUNNING
2024-07-12 19:08:54,522 Sleeping for 5s. Reason: RUNNING
2024-07-12 19:08:59,946 Sleeping for 9s. Reason: RUNNING
2024-07-12 19:09:09,376 Sleeping for 9s. Reason: RUNNING
2024-07-12 19:09:18,799 Sleeping for 8s. Reason: RUNNING
2024-07-12 19:09:30,752 Sleeping for 8s. Reason: PENDING
2024-07-12 19:09:39,171 Sleeping for 7s. Reason: RUNNING
2024-07-12 19:09:46,589 Sleeping for 8s. Reason: RUNNING
2024-07-12 19:09:55,033 Sleeping for 9s. Reason: RUNNING
2024-07-12 19:10:04,465 Sleeping for 10s. Reason: RUNNING
2024-07-12 19:10:14,899 Sleeping for 5s. Reason: RUNNING
2024-07-12 19:10:20,321 Sleeping for 7s. Reason: RUNNING
2024-07-12 19:10:27,733 Sleeping for 10s. Reason: RUNNING
2024-07-12 19:10:38,166 Sleeping for 10s. Reason: RUNNING
2024-07-12 19:10:48,593 Sleeping for 6s. Reason: RUNNING
2024-07-12 19:10:55,007 Sleeping for 10s. Reason: RUNNING
2024-07-12 19:11:07,344 Setting max_seq=508, max_extra_seq=2048
2024-07-12 19:13:44,654 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.4 pTM=0.578 ipTM=0.173
2024-07-12 19:13:49,487 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=71.7 pTM=0.576 ipTM=0.184 tol=1.84
2024-07-12 19:13:54,317 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=73.7 pTM=0.602 ipTM=0.383 tol=1.23
2024-07-12 19:13:59,147 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.5 pTM=0.606 ipTM=0.387 tol=0.436
2024-07-12 19:13:59,147 alphafold2_multimer_v3_model_1_seed_000 took 131.0s (3 recycles)
2024-07-12 19:14:04,136 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73.4 pTM=0.593 ipTM=0.167
2024-07-12 19:14:08,971 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=71.2 pTM=0.573 ipTM=0.177 tol=2.73
2024-07-12 19:14:13,800 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.7 pTM=0.571 ipTM=0.171 tol=1.62
2024-07-12 19:14:18,631 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.6 pTM=0.575 ipTM=0.16 tol=3.36
2024-07-12 19:14:23,463 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73 pTM=0.578 ipTM=0.155 tol=1.35
2024-07-12 19:14:28,294 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=73.4 pTM=0.58 ipTM=0.157 tol=0.409
2024-07-12 19:14:28,295 alphafold2_multimer_v3_model_2_seed_000 took 29.0s (5 recycles)
2024-07-12 19:14:33,296 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75.6 pTM=0.618 ipTM=0.208
2024-07-12 19:14:38,135 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=73.2 pTM=0.583 ipTM=0.177 tol=1.47
2024-07-12 19:14:42,970 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.2 pTM=0.569 ipTM=0.15 tol=2.92
2024-07-12 19:14:47,807 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.6 pTM=0.571 ipTM=0.143 tol=0.625
2024-07-12 19:14:52,643 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=72.3 pTM=0.572 ipTM=0.151 tol=1.42
2024-07-12 19:14:57,481 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.6 pTM=0.573 ipTM=0.149 tol=1.16
2024-07-12 19:15:02,320 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.3 pTM=0.57 ipTM=0.146 tol=0.713
2024-07-12 19:15:07,157 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=72.7 pTM=0.571 ipTM=0.146 tol=0.995
2024-07-12 19:15:11,999 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=73.1 pTM=0.578 ipTM=0.155 tol=0.471
2024-07-12 19:15:11,999 alphafold2_multimer_v3_model_3_seed_000 took 43.6s (8 recycles)
2024-07-12 19:15:17,030 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.1 pTM=0.625 ipTM=0.181
2024-07-12 19:15:21,890 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=75.4 pTM=0.615 ipTM=0.166 tol=1.88
2024-07-12 19:15:26,743 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.2 pTM=0.601 ipTM=0.147 tol=1.25
2024-07-12 19:15:31,599 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.5 pTM=0.61 ipTM=0.156 tol=0.697
2024-07-12 19:15:36,445 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.8 pTM=0.605 ipTM=0.146 tol=1.56
2024-07-12 19:15:41,304 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.8 pTM=0.612 ipTM=0.15 tol=0.583
2024-07-12 19:15:46,158 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.6 pTM=0.607 ipTM=0.145 tol=1.04
2024-07-12 19:15:51,012 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=75.2 pTM=0.615 ipTM=0.165 tol=0.994
2024-07-12 19:15:55,858 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.9 pTM=0.606 ipTM=0.147 tol=1.38
2024-07-12 19:16:00,716 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.8 pTM=0.619 ipTM=0.167 tol=1.55
2024-07-12 19:16:05,573 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=75.8 pTM=0.604 ipTM=0.145 tol=1.49
2024-07-12 19:16:10,428 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=74.8 pTM=0.612 ipTM=0.165 tol=1.5
2024-07-12 19:16:15,279 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.5 pTM=0.604 ipTM=0.146 tol=1.25
2024-07-12 19:16:20,130 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=74.9 pTM=0.615 ipTM=0.168 tol=1.45
2024-07-12 19:16:24,988 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=75.6 pTM=0.604 ipTM=0.143 tol=1.48
2024-07-12 19:16:29,843 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=74.6 pTM=0.613 ipTM=0.172 tol=1.84
2024-07-12 19:16:34,698 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=75.6 pTM=0.606 ipTM=0.146 tol=1.6
2024-07-12 19:16:39,549 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=74.9 pTM=0.621 ipTM=0.184 tol=1.93
2024-07-12 19:16:44,402 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.4 pTM=0.6 ipTM=0.141 tol=2.05
2024-07-12 19:16:49,258 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=74.6 pTM=0.613 ipTM=0.172 tol=2.09
2024-07-12 19:16:54,119 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.7 pTM=0.6 ipTM=0.138 tol=2.54
2024-07-12 19:16:58,974 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=74.6 pTM=0.614 ipTM=0.177 tol=2.78
2024-07-12 19:17:03,831 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=75.7 pTM=0.604 ipTM=0.147 tol=1.97
2024-07-12 19:17:08,676 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=74.4 pTM=0.605 ipTM=0.162 tol=2.17
2024-07-12 19:17:13,529 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=74.9 pTM=0.605 ipTM=0.148 tol=1.12
2024-07-12 19:17:18,383 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=74.7 pTM=0.61 ipTM=0.162 tol=1.06
2024-07-12 19:17:23,226 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=75.4 pTM=0.607 ipTM=0.152 tol=1.27
2024-07-12 19:17:28,076 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=74.8 pTM=0.609 ipTM=0.159 tol=1.52
2024-07-12 19:17:32,926 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.2 pTM=0.606 ipTM=0.15 tol=0.603
2024-07-12 19:17:37,783 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75.2 pTM=0.614 ipTM=0.16 tol=0.616
2024-07-12 19:17:42,637 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=75 pTM=0.603 ipTM=0.149 tol=0.962
2024-07-12 19:17:42,638 alphafold2_multimer_v3_model_4_seed_000 took 150.5s (30 recycles)
2024-07-12 19:17:47,655 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.2 pTM=0.644 ipTM=0.249
2024-07-12 19:17:52,503 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.2 pTM=0.63 ipTM=0.253 tol=1.46
2024-07-12 19:17:57,361 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=74.8 pTM=0.623 ipTM=0.205 tol=0.944
2024-07-12 19:18:02,218 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.6 pTM=0.625 ipTM=0.196 tol=1.59
2024-07-12 19:18:07,077 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.1 pTM=0.633 ipTM=0.211 tol=0.616
2024-07-12 19:18:11,933 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76.2 pTM=0.635 ipTM=0.217 tol=0.404
2024-07-12 19:18:11,933 alphafold2_multimer_v3_model_5_seed_000 took 29.1s (5 recycles)
2024-07-12 19:18:12,089 reranking models by 'multimer' metric
2024-07-12 19:18:18,318 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 19:18:51,464 Relaxation took 39.4s
2024-07-12 19:18:51,464 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=74.5 pTM=0.606 ipTM=0.387
2024-07-12 19:19:17,265 Relaxation took 25.8s
2024-07-12 19:19:17,265 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.2 pTM=0.635 ipTM=0.217
2024-07-12 19:19:27,781 Relaxation took 10.5s
2024-07-12 19:19:27,781 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=73.4 pTM=0.58 ipTM=0.157
2024-07-12 19:19:38,661 Relaxation took 10.9s
2024-07-12 19:19:38,661 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75 pTM=0.603 ipTM=0.149
2024-07-12 19:19:53,684 Relaxation took 15.0s
2024-07-12 19:19:53,684 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.1 pTM=0.578 ipTM=0.155
2024-07-12 19:19:54,713 Done