2024-07-12 19:34:59,650 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 19:34:59,994 Running on GPU
2024-07-12 19:35:12,923 Found 6 citations for tools or databases
2024-07-12 19:35:12,923 Query 1/1: RPAB1_SIML1 (length 278)
2024-07-12 19:35:13,385 Sleeping for 6s. Reason: PENDING
2024-07-12 19:35:19,815 Sleeping for 8s. Reason: RUNNING
2024-07-12 19:35:28,246 Sleeping for 5s. Reason: RUNNING
2024-07-12 19:35:35,130 Sleeping for 5s. Reason: PENDING
2024-07-12 19:35:40,547 Sleeping for 9s. Reason: RUNNING
2024-07-12 19:35:51,069 Setting max_seq=508, max_extra_seq=1956
2024-07-12 19:39:08,439 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=55.9 pTM=0.491 ipTM=0.103
2024-07-12 19:39:11,050 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=55.8 pTM=0.491 ipTM=0.16 tol=5.38
2024-07-12 19:39:13,660 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=56.2 pTM=0.493 ipTM=0.153 tol=1.88
2024-07-12 19:39:16,267 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=55.8 pTM=0.494 ipTM=0.166 tol=1.39
2024-07-12 19:39:18,879 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=57.6 pTM=0.506 ipTM=0.18 tol=0.824
2024-07-12 19:39:21,492 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=58.7 pTM=0.511 ipTM=0.186 tol=0.462
2024-07-12 19:39:21,492 alphafold2_multimer_v3_model_1_seed_000 took 162.6s (5 recycles)
2024-07-12 19:39:24,175 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=59 pTM=0.5 ipTM=0.122
2024-07-12 19:39:26,784 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=56.6 pTM=0.474 ipTM=0.131 tol=3.2
2024-07-12 19:39:29,389 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=58.6 pTM=0.491 ipTM=0.139 tol=1.75
2024-07-12 19:39:31,996 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=59.1 pTM=0.498 ipTM=0.152 tol=1.49
2024-07-12 19:39:34,604 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60.9 pTM=0.517 ipTM=0.166 tol=1.62
2024-07-12 19:39:37,209 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=62.3 pTM=0.527 ipTM=0.172 tol=1.44
2024-07-12 19:39:39,814 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=62.4 pTM=0.529 ipTM=0.171 tol=1.21
2024-07-12 19:39:42,421 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=61.7 pTM=0.525 ipTM=0.165 tol=1.01
2024-07-12 19:39:45,030 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=62.5 pTM=0.534 ipTM=0.184 tol=0.807
2024-07-12 19:39:47,641 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=61.2 pTM=0.524 ipTM=0.172 tol=0.66
2024-07-12 19:39:50,249 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=62.3 pTM=0.536 ipTM=0.183 tol=0.771
2024-07-12 19:39:52,855 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=61.2 pTM=0.523 ipTM=0.177 tol=0.626
2024-07-12 19:39:55,461 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=62.1 pTM=0.526 ipTM=0.186 tol=0.792
2024-07-12 19:39:58,067 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=62.1 pTM=0.525 ipTM=0.178 tol=0.83
2024-07-12 19:40:00,675 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=61 pTM=0.519 ipTM=0.181 tol=0.752
2024-07-12 19:40:03,283 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.5 pTM=0.515 ipTM=0.18 tol=1.34
2024-07-12 19:40:05,891 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=61.2 pTM=0.521 ipTM=0.188 tol=1.02
2024-07-12 19:40:08,499 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=62.2 pTM=0.527 ipTM=0.179 tol=0.715
2024-07-12 19:40:11,106 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=61.8 pTM=0.526 ipTM=0.189 tol=0.693
2024-07-12 19:40:13,715 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=63.3 pTM=0.542 ipTM=0.19 tol=0.925
2024-07-12 19:40:16,330 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=63 pTM=0.536 ipTM=0.178 tol=0.635
2024-07-12 19:40:18,941 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=61.3 pTM=0.521 ipTM=0.179 tol=1.06
2024-07-12 19:40:21,550 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=62.4 pTM=0.527 ipTM=0.184 tol=1.33
2024-07-12 19:40:24,158 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=62 pTM=0.525 ipTM=0.18 tol=1.06
2024-07-12 19:40:26,767 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=61 pTM=0.524 ipTM=0.186 tol=1.45
2024-07-12 19:40:29,377 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=65.1 pTM=0.552 ipTM=0.194 tol=2.54
2024-07-12 19:40:31,986 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=61.6 pTM=0.522 ipTM=0.174 tol=0.841
2024-07-12 19:40:34,593 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=62.1 pTM=0.526 ipTM=0.186 tol=0.619
2024-07-12 19:40:37,203 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=63.1 pTM=0.533 ipTM=0.182 tol=0.513
2024-07-12 19:40:39,811 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=62.3 pTM=0.528 ipTM=0.182 tol=0.355
2024-07-12 19:40:39,811 alphafold2_multimer_v3_model_2_seed_000 took 78.3s (29 recycles)
2024-07-12 19:40:42,512 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=67.2 pTM=0.519 ipTM=0.12
2024-07-12 19:40:45,138 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=64.4 pTM=0.505 ipTM=0.134 tol=5.64
2024-07-12 19:40:47,759 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=64.9 pTM=0.503 ipTM=0.125 tol=2.28
2024-07-12 19:40:50,379 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=63.7 pTM=0.501 ipTM=0.11 tol=3.9
2024-07-12 19:40:53,003 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=65.6 pTM=0.506 ipTM=0.125 tol=2.77
2024-07-12 19:40:55,627 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=65.8 pTM=0.509 ipTM=0.133 tol=0.829
2024-07-12 19:40:58,248 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=66.4 pTM=0.508 ipTM=0.135 tol=0.935
2024-07-12 19:41:00,868 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=64.2 pTM=0.501 ipTM=0.13 tol=0.87
2024-07-12 19:41:03,491 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=64.4 pTM=0.504 ipTM=0.125 tol=1.27
2024-07-12 19:41:06,114 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=63.2 pTM=0.503 ipTM=0.129 tol=1.19
2024-07-12 19:41:08,737 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=63.3 pTM=0.503 ipTM=0.135 tol=2.1
2024-07-12 19:41:11,358 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=63.8 pTM=0.506 ipTM=0.14 tol=1.12
2024-07-12 19:41:13,985 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=64.2 pTM=0.508 ipTM=0.144 tol=2.43
2024-07-12 19:41:16,607 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=63.3 pTM=0.505 ipTM=0.142 tol=2.19
2024-07-12 19:41:19,226 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=62.4 pTM=0.504 ipTM=0.148 tol=1.49
2024-07-12 19:41:21,847 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=62.8 pTM=0.513 ipTM=0.169 tol=1.58
2024-07-12 19:41:24,467 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=62.4 pTM=0.511 ipTM=0.169 tol=1.05
2024-07-12 19:41:27,087 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=63.2 pTM=0.513 ipTM=0.167 tol=1.84
2024-07-12 19:41:29,712 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=63.3 pTM=0.51 ipTM=0.161 tol=2.25
2024-07-12 19:41:32,339 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=64.6 pTM=0.516 ipTM=0.171 tol=1.53
2024-07-12 19:41:34,963 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=64.2 pTM=0.512 ipTM=0.163 tol=0.761
2024-07-12 19:41:37,587 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=63.6 pTM=0.513 ipTM=0.17 tol=1.97
2024-07-12 19:41:40,208 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=63.1 pTM=0.51 ipTM=0.16 tol=1.63
2024-07-12 19:41:42,832 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=63.1 pTM=0.512 ipTM=0.167 tol=1.44
2024-07-12 19:41:45,454 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=62.3 pTM=0.506 ipTM=0.154 tol=1.69
2024-07-12 19:41:48,080 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=63.5 pTM=0.515 ipTM=0.173 tol=2.38
2024-07-12 19:41:50,698 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=62.6 pTM=0.504 ipTM=0.15 tol=3.37
2024-07-12 19:41:53,319 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=63.7 pTM=0.512 ipTM=0.166 tol=1.21
2024-07-12 19:41:55,942 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=63.5 pTM=0.512 ipTM=0.166 tol=1.01
2024-07-12 19:41:58,564 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=63.5 pTM=0.512 ipTM=0.166 tol=0.846
2024-07-12 19:42:01,187 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=62.8 pTM=0.51 ipTM=0.163 tol=1.03
2024-07-12 19:42:01,188 alphafold2_multimer_v3_model_3_seed_000 took 81.3s (30 recycles)
2024-07-12 19:42:03,871 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.4 pTM=0.58 ipTM=0.129
2024-07-12 19:42:06,483 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=65.2 pTM=0.552 ipTM=0.146 tol=2.67
2024-07-12 19:42:09,098 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=66.2 pTM=0.559 ipTM=0.135 tol=3.62
2024-07-12 19:42:11,719 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=67.9 pTM=0.593 ipTM=0.15 tol=1.68
2024-07-12 19:42:14,337 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69.1 pTM=0.614 ipTM=0.164 tol=1.58
2024-07-12 19:42:16,955 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=69.9 pTM=0.63 ipTM=0.166 tol=1.12
2024-07-12 19:42:19,571 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=70 pTM=0.611 ipTM=0.153 tol=1.8
2024-07-12 19:42:22,185 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=68.3 pTM=0.581 ipTM=0.166 tol=1.36
2024-07-12 19:42:24,798 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=68.4 pTM=0.574 ipTM=0.166 tol=1.54
2024-07-12 19:42:27,416 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=68.8 pTM=0.575 ipTM=0.171 tol=1.41
2024-07-12 19:42:30,035 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=68.6 pTM=0.576 ipTM=0.173 tol=0.84
2024-07-12 19:42:32,653 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69.4 pTM=0.582 ipTM=0.167 tol=0.95
2024-07-12 19:42:35,272 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=70.3 pTM=0.603 ipTM=0.174 tol=0.845
2024-07-12 19:42:37,889 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=69.3 pTM=0.577 ipTM=0.165 tol=0.764
2024-07-12 19:42:40,506 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=69.1 pTM=0.571 ipTM=0.17 tol=0.578
2024-07-12 19:42:43,123 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=68.9 pTM=0.568 ipTM=0.167 tol=0.342
2024-07-12 19:42:43,123 alphafold2_multimer_v3_model_4_seed_000 took 41.9s (15 recycles)
2024-07-12 19:42:45,807 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=65.3 pTM=0.572 ipTM=0.158
2024-07-12 19:42:48,421 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=60.3 pTM=0.503 ipTM=0.112 tol=3.23
2024-07-12 19:42:51,037 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=60.7 pTM=0.507 ipTM=0.13 tol=2.44
2024-07-12 19:42:53,651 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=59.9 pTM=0.505 ipTM=0.137 tol=1.63
2024-07-12 19:42:56,267 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=62.2 pTM=0.513 ipTM=0.129 tol=1.14
2024-07-12 19:42:58,883 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=62.7 pTM=0.518 ipTM=0.145 tol=0.963
2024-07-12 19:43:01,501 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=63.1 pTM=0.524 ipTM=0.151 tol=1.97
2024-07-12 19:43:04,116 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=63 pTM=0.518 ipTM=0.132 tol=1.75
2024-07-12 19:43:06,737 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=64.6 pTM=0.539 ipTM=0.161 tol=1.54
2024-07-12 19:43:09,355 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=62.9 pTM=0.528 ipTM=0.161 tol=1.02
2024-07-12 19:43:11,972 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=62.6 pTM=0.526 ipTM=0.164 tol=1.45
2024-07-12 19:43:14,587 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=62 pTM=0.525 ipTM=0.165 tol=0.922
2024-07-12 19:43:17,205 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=63.3 pTM=0.528 ipTM=0.161 tol=1.78
2024-07-12 19:43:19,823 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=62.3 pTM=0.521 ipTM=0.162 tol=1.19
2024-07-12 19:43:22,441 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=61.8 pTM=0.518 ipTM=0.154 tol=0.926
2024-07-12 19:43:25,062 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=62.2 pTM=0.522 ipTM=0.168 tol=1.69
2024-07-12 19:43:27,680 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=61.2 pTM=0.516 ipTM=0.171 tol=1.24
2024-07-12 19:43:30,297 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=63.5 pTM=0.527 ipTM=0.183 tol=0.836
2024-07-12 19:43:32,918 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=63.9 pTM=0.529 ipTM=0.178 tol=0.659
2024-07-12 19:43:35,537 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=63.7 pTM=0.528 ipTM=0.175 tol=1.36
2024-07-12 19:43:38,155 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=63.8 pTM=0.525 ipTM=0.158 tol=2.03
2024-07-12 19:43:40,774 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=64.1 pTM=0.529 ipTM=0.167 tol=0.68
2024-07-12 19:43:43,396 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=64.2 pTM=0.532 ipTM=0.181 tol=0.869
2024-07-12 19:43:46,016 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=63.7 pTM=0.53 ipTM=0.177 tol=1.13
2024-07-12 19:43:48,638 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=63.2 pTM=0.525 ipTM=0.171 tol=1.49
2024-07-12 19:43:51,261 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=64 pTM=0.524 ipTM=0.158 tol=1.36
2024-07-12 19:43:53,881 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=63.2 pTM=0.52 ipTM=0.151 tol=2.22
2024-07-12 19:43:56,501 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=63.8 pTM=0.525 ipTM=0.159 tol=1.91
2024-07-12 19:43:59,126 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=64.2 pTM=0.528 ipTM=0.167 tol=1.92
2024-07-12 19:44:01,745 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=64 pTM=0.523 ipTM=0.155 tol=1.49
2024-07-12 19:44:04,372 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=64.2 pTM=0.528 ipTM=0.162 tol=1.65
2024-07-12 19:44:04,373 alphafold2_multimer_v3_model_5_seed_000 took 81.2s (30 recycles)
2024-07-12 19:44:04,437 reranking models by 'multimer' metric
2024-07-12 19:44:25,617 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 19:44:51,219 Relaxation took 46.8s
2024-07-12 19:44:51,219 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=58.7 pTM=0.511 ipTM=0.186
2024-07-12 19:45:02,610 Relaxation took 11.4s
2024-07-12 19:45:02,610 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=62.3 pTM=0.528 ipTM=0.182
2024-07-12 19:45:15,317 Relaxation took 12.7s
2024-07-12 19:45:15,317 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=68.9 pTM=0.568 ipTM=0.167
2024-07-12 19:45:29,508 Relaxation took 14.2s
2024-07-12 19:45:29,508 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=64.2 pTM=0.528 ipTM=0.162
2024-07-12 19:45:38,085 Relaxation took 8.6s
2024-07-12 19:45:38,085 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=62.8 pTM=0.51 ipTM=0.163
2024-07-12 19:45:39,133 Done