2024-07-12 20:10:59,055 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 20:10:59,383 Running on GPU
2024-07-12 20:11:20,436 Found 6 citations for tools or databases
2024-07-12 20:11:20,436 Query 1/1: RS9_TM9S4 (length 836)
2024-07-12 20:11:20,960 Sleeping for 6s. Reason: PENDING
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2024-07-12 20:12:41,254 Sleeping for 6s. Reason: RUNNING
2024-07-12 20:12:49,537 Sleeping for 7s. Reason: PENDING
2024-07-12 20:12:56,960 Sleeping for 8s. Reason: RUNNING
2024-07-12 20:13:05,370 Sleeping for 5s. Reason: RUNNING
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2024-07-12 20:13:16,199 Sleeping for 5s. Reason: RUNNING
2024-07-12 20:13:21,607 Sleeping for 6s. Reason: RUNNING
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2024-07-12 20:13:47,105 Setting max_seq=508, max_extra_seq=2048
2024-07-12 20:17:08,187 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=77.8 pTM=0.661 ipTM=0.178
2024-07-12 20:17:22,352 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=79.3 pTM=0.681 ipTM=0.207 tol=3.84
2024-07-12 20:17:36,574 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=81.1 pTM=0.695 ipTM=0.243 tol=1.36
2024-07-12 20:17:50,834 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.1 pTM=0.694 ipTM=0.246 tol=0.332
2024-07-12 20:17:50,835 alphafold2_multimer_v3_model_1_seed_000 took 180.2s (3 recycles)
2024-07-12 20:18:05,504 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=77.8 pTM=0.685 ipTM=0.281
2024-07-12 20:18:19,752 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=77.9 pTM=0.677 ipTM=0.236 tol=3.55
2024-07-12 20:18:34,022 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=79.3 pTM=0.695 ipTM=0.277 tol=1.31
2024-07-12 20:18:48,311 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=79.6 pTM=0.695 ipTM=0.285 tol=0.534
2024-07-12 20:19:02,609 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=79.8 pTM=0.697 ipTM=0.294 tol=0.347
2024-07-12 20:19:02,610 alphafold2_multimer_v3_model_2_seed_000 took 71.3s (4 recycles)
2024-07-12 20:19:17,365 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.2 pTM=0.65 ipTM=0.171
2024-07-12 20:19:31,666 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.1 pTM=0.659 ipTM=0.195 tol=2.72
2024-07-12 20:19:45,996 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.6 pTM=0.665 ipTM=0.188 tol=0.8
2024-07-12 20:20:00,337 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.2 pTM=0.667 ipTM=0.189 tol=0.757
2024-07-12 20:20:14,686 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.5 pTM=0.667 ipTM=0.183 tol=0.75
2024-07-12 20:20:29,033 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=78.3 pTM=0.667 ipTM=0.184 tol=1.55
2024-07-12 20:20:43,390 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=78.2 pTM=0.665 ipTM=0.186 tol=0.637
2024-07-12 20:20:57,745 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=78.4 pTM=0.667 ipTM=0.193 tol=0.729
2024-07-12 20:21:12,091 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=78.2 pTM=0.666 ipTM=0.194 tol=1.23
2024-07-12 20:21:26,458 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=78 pTM=0.666 ipTM=0.193 tol=0.529
2024-07-12 20:21:40,816 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=78.2 pTM=0.665 ipTM=0.194 tol=0.745
2024-07-12 20:21:55,179 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=78.2 pTM=0.664 ipTM=0.192 tol=0.585
2024-07-12 20:22:09,535 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=78.3 pTM=0.664 ipTM=0.191 tol=0.637
2024-07-12 20:22:23,888 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=78.1 pTM=0.666 ipTM=0.199 tol=1.18
2024-07-12 20:22:38,237 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=78.5 pTM=0.669 ipTM=0.22 tol=1.05
2024-07-12 20:22:52,580 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=78.3 pTM=0.666 ipTM=0.219 tol=1.44
2024-07-12 20:23:06,942 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=78.4 pTM=0.667 ipTM=0.211 tol=0.837
2024-07-12 20:23:21,301 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=78.7 pTM=0.671 ipTM=0.222 tol=0.588
2024-07-12 20:23:35,666 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=78.4 pTM=0.667 ipTM=0.218 tol=0.505
2024-07-12 20:23:50,033 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=78.1 pTM=0.664 ipTM=0.197 tol=0.799
2024-07-12 20:24:04,408 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=77.9 pTM=0.663 ipTM=0.198 tol=0.486
2024-07-12 20:24:04,409 alphafold2_multimer_v3_model_3_seed_000 took 301.4s (20 recycles)
2024-07-12 20:24:19,250 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=77.4 pTM=0.664 ipTM=0.155
2024-07-12 20:24:33,641 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.7 pTM=0.663 ipTM=0.182 tol=2.45
2024-07-12 20:24:48,049 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=77.6 pTM=0.669 ipTM=0.178 tol=2.47
2024-07-12 20:25:02,457 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=77.4 pTM=0.668 ipTM=0.174 tol=1.63
2024-07-12 20:25:16,872 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=77.7 pTM=0.668 ipTM=0.17 tol=1.68
2024-07-12 20:25:31,290 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=77.8 pTM=0.671 ipTM=0.17 tol=1.85
2024-07-12 20:25:45,692 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=77.9 pTM=0.671 ipTM=0.189 tol=2.42
2024-07-12 20:26:00,093 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=78.7 pTM=0.677 ipTM=0.213 tol=1.38
2024-07-12 20:26:14,493 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=78.5 pTM=0.676 ipTM=0.206 tol=0.498
2024-07-12 20:26:14,494 alphafold2_multimer_v3_model_4_seed_000 took 129.6s (8 recycles)
2024-07-12 20:26:29,313 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.3 pTM=0.631 ipTM=0.155
2024-07-12 20:26:43,702 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.1 pTM=0.638 ipTM=0.153 tol=4.16
2024-07-12 20:26:58,102 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.1 pTM=0.655 ipTM=0.163 tol=1.29
2024-07-12 20:27:12,512 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.4 pTM=0.663 ipTM=0.176 tol=1.12
2024-07-12 20:27:26,923 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.1 pTM=0.667 ipTM=0.187 tol=4.44
2024-07-12 20:27:41,346 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.7 pTM=0.669 ipTM=0.177 tol=1.3
2024-07-12 20:27:55,767 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=77.5 pTM=0.665 ipTM=0.172 tol=0.568
2024-07-12 20:28:10,171 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=77.4 pTM=0.667 ipTM=0.177 tol=0.732
2024-07-12 20:28:24,585 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=77.4 pTM=0.671 ipTM=0.182 tol=0.412
2024-07-12 20:28:24,586 alphafold2_multimer_v3_model_5_seed_000 took 129.6s (8 recycles)
2024-07-12 20:28:25,023 reranking models by 'multimer' metric
2024-07-12 20:28:38,327 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 20:29:11,982 Relaxation took 47.0s
2024-07-12 20:29:11,983 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=79.8 pTM=0.697 ipTM=0.294
2024-07-12 20:29:58,640 Relaxation took 46.7s
2024-07-12 20:29:58,640 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.1 pTM=0.694 ipTM=0.246
2024-07-12 20:38:08,420 Relaxation took 489.8s
2024-07-12 20:38:08,420 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.5 pTM=0.676 ipTM=0.206
2024-07-12 20:38:51,992 Relaxation took 43.6s
2024-07-12 20:38:51,992 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.9 pTM=0.663 ipTM=0.198
2024-07-12 20:39:49,089 Relaxation took 57.1s
2024-07-12 20:39:49,089 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.4 pTM=0.671 ipTM=0.182
2024-07-12 20:39:51,723 Done