2024-07-12 21:13:43,230 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-12 21:13:43,555 Running on GPU
2024-07-12 21:13:53,312 Found 6 citations for tools or databases
2024-07-12 21:13:53,313 Query 1/1: S10A6_METRN (length 383)
2024-07-12 21:13:53,785 Sleeping for 7s. Reason: PENDING
2024-07-12 21:14:01,200 Sleeping for 7s. Reason: RUNNING
2024-07-12 21:14:08,631 Sleeping for 8s. Reason: RUNNING
2024-07-12 21:14:17,060 Sleeping for 10s. Reason: RUNNING
2024-07-12 21:14:27,484 Sleeping for 10s. Reason: RUNNING
2024-07-12 21:14:37,891 Sleeping for 5s. Reason: RUNNING
2024-07-12 21:14:44,830 Sleeping for 10s. Reason: PENDING
2024-07-12 21:14:55,252 Sleeping for 9s. Reason: RUNNING
2024-07-12 21:15:06,158 Setting max_seq=508, max_extra_seq=2048
2024-07-12 21:18:22,960 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=68.6 pTM=0.484 ipTM=0.212
2024-07-12 21:18:26,572 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.2 pTM=0.539 ipTM=0.218 tol=5.68
2024-07-12 21:18:30,185 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=71.9 pTM=0.588 ipTM=0.206 tol=2.49
2024-07-12 21:18:33,790 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=71 pTM=0.566 ipTM=0.192 tol=1.02
2024-07-12 21:18:37,396 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=71.7 pTM=0.585 ipTM=0.183 tol=1.3
2024-07-12 21:18:40,998 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=71.8 pTM=0.575 ipTM=0.178 tol=1.12
2024-07-12 21:18:44,604 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=72.4 pTM=0.576 ipTM=0.175 tol=0.793
2024-07-12 21:18:48,211 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=72.4 pTM=0.587 ipTM=0.183 tol=1.07
2024-07-12 21:18:51,815 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=72.7 pTM=0.581 ipTM=0.192 tol=0.472
2024-07-12 21:18:51,815 alphafold2_multimer_v3_model_1_seed_000 took 188.1s (8 recycles)
2024-07-12 21:18:55,551 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=66.8 pTM=0.392 ipTM=0.139
2024-07-12 21:18:59,163 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=67.9 pTM=0.423 ipTM=0.165 tol=12.4
2024-07-12 21:19:02,776 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=69.9 pTM=0.477 ipTM=0.19 tol=2.96
2024-07-12 21:19:06,386 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=70 pTM=0.492 ipTM=0.188 tol=1.75
2024-07-12 21:19:09,998 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=70.7 pTM=0.522 ipTM=0.192 tol=0.55
2024-07-12 21:19:13,611 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=71.3 pTM=0.554 ipTM=0.203 tol=0.774
2024-07-12 21:19:17,222 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71 pTM=0.567 ipTM=0.196 tol=0.351
2024-07-12 21:19:17,223 alphafold2_multimer_v3_model_2_seed_000 took 25.3s (6 recycles)
2024-07-12 21:19:20,956 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=66.5 pTM=0.389 ipTM=0.152
2024-07-12 21:19:24,570 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=65.4 pTM=0.394 ipTM=0.134 tol=8.36
2024-07-12 21:19:28,187 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=67.6 pTM=0.428 ipTM=0.136 tol=2.34
2024-07-12 21:19:31,798 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=67 pTM=0.426 ipTM=0.134 tol=2.16
2024-07-12 21:19:35,413 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=67.6 pTM=0.425 ipTM=0.128 tol=1.11
2024-07-12 21:19:39,030 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=67.5 pTM=0.41 ipTM=0.124 tol=1.97
2024-07-12 21:19:42,643 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=68.6 pTM=0.442 ipTM=0.115 tol=1.33
2024-07-12 21:19:46,253 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=68.4 pTM=0.443 ipTM=0.117 tol=0.741
2024-07-12 21:19:49,862 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=68.6 pTM=0.453 ipTM=0.115 tol=0.668
2024-07-12 21:19:53,471 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=68.9 pTM=0.457 ipTM=0.12 tol=1.02
2024-07-12 21:19:57,082 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=70.1 pTM=0.491 ipTM=0.124 tol=0.854
2024-07-12 21:20:00,689 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=69.9 pTM=0.511 ipTM=0.14 tol=1.12
2024-07-12 21:20:04,297 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=71.4 pTM=0.552 ipTM=0.152 tol=0.713
2024-07-12 21:20:07,905 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=71.8 pTM=0.571 ipTM=0.171 tol=1.17
2024-07-12 21:20:11,515 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=72.8 pTM=0.596 ipTM=0.187 tol=1.21
2024-07-12 21:20:15,121 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=72.6 pTM=0.6 ipTM=0.182 tol=0.773
2024-07-12 21:20:18,732 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=73.8 pTM=0.62 ipTM=0.198 tol=1.24
2024-07-12 21:20:22,341 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=73.3 pTM=0.62 ipTM=0.191 tol=0.933
2024-07-12 21:20:25,949 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=73.3 pTM=0.62 ipTM=0.198 tol=0.496
2024-07-12 21:20:25,949 alphafold2_multimer_v3_model_3_seed_000 took 68.6s (18 recycles)
2024-07-12 21:20:29,677 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.8 pTM=0.396 ipTM=0.157
2024-07-12 21:20:33,285 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.2 pTM=0.431 ipTM=0.144 tol=8.77
2024-07-12 21:20:36,895 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=67.2 pTM=0.429 ipTM=0.142 tol=1.64
2024-07-12 21:20:40,498 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=67.9 pTM=0.467 ipTM=0.157 tol=2.15
2024-07-12 21:20:44,105 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=69.5 pTM=0.496 ipTM=0.146 tol=0.614
2024-07-12 21:20:47,708 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=70.3 pTM=0.524 ipTM=0.158 tol=0.965
2024-07-12 21:20:51,311 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.1 pTM=0.541 ipTM=0.145 tol=0.731
2024-07-12 21:20:54,914 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=71.6 pTM=0.566 ipTM=0.15 tol=0.641
2024-07-12 21:20:58,518 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=72.3 pTM=0.568 ipTM=0.115 tol=5.88
2024-07-12 21:21:02,124 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=72.9 pTM=0.586 ipTM=0.157 tol=8.82
2024-07-12 21:21:05,735 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.8 pTM=0.624 ipTM=0.16 tol=2.57
2024-07-12 21:21:09,351 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=74.4 pTM=0.641 ipTM=0.181 tol=1.32
2024-07-12 21:21:12,971 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=74.8 pTM=0.65 ipTM=0.22 tol=1.51
2024-07-12 21:21:16,587 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75 pTM=0.649 ipTM=0.219 tol=1.53
2024-07-12 21:21:20,208 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=74.9 pTM=0.651 ipTM=0.207 tol=0.921
2024-07-12 21:21:23,827 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=74.7 pTM=0.642 ipTM=0.19 tol=0.365
2024-07-12 21:21:23,828 alphafold2_multimer_v3_model_4_seed_000 took 57.8s (15 recycles)
2024-07-12 21:21:27,559 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=66.9 pTM=0.39 ipTM=0.101
2024-07-12 21:21:31,177 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=67 pTM=0.425 ipTM=0.117 tol=10.8
2024-07-12 21:21:34,790 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=68.6 pTM=0.485 ipTM=0.128 tol=2.17
2024-07-12 21:21:38,401 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=70.4 pTM=0.552 ipTM=0.124 tol=1.79
2024-07-12 21:21:42,012 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.1 pTM=0.584 ipTM=0.147 tol=2.61
2024-07-12 21:21:45,625 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=71.8 pTM=0.598 ipTM=0.147 tol=1.08
2024-07-12 21:21:49,239 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=73.4 pTM=0.625 ipTM=0.133 tol=1.89
2024-07-12 21:21:52,865 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=74.1 pTM=0.638 ipTM=0.128 tol=1.07
2024-07-12 21:21:56,494 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=74.7 pTM=0.639 ipTM=0.125 tol=0.656
2024-07-12 21:22:00,123 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=74.8 pTM=0.64 ipTM=0.123 tol=0.705
2024-07-12 21:22:03,752 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=74.9 pTM=0.641 ipTM=0.125 tol=0.95
2024-07-12 21:22:07,377 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=74.4 pTM=0.641 ipTM=0.122 tol=0.579
2024-07-12 21:22:11,003 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=74.5 pTM=0.64 ipTM=0.126 tol=0.688
2024-07-12 21:22:14,632 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=74.8 pTM=0.643 ipTM=0.124 tol=0.84
2024-07-12 21:22:18,261 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=74.5 pTM=0.642 ipTM=0.126 tol=0.706
2024-07-12 21:22:21,887 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=74.6 pTM=0.64 ipTM=0.126 tol=0.41
2024-07-12 21:22:21,888 alphafold2_multimer_v3_model_5_seed_000 took 58.0s (15 recycles)
2024-07-12 21:22:21,994 reranking models by 'multimer' metric
2024-07-12 21:22:32,096 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-12 21:22:45,955 Relaxation took 24.0s
2024-07-12 21:22:45,955 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=73.3 pTM=0.62 ipTM=0.198
2024-07-12 21:22:55,032 Relaxation took 9.1s
2024-07-12 21:22:55,032 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=74.7 pTM=0.642 ipTM=0.19
2024-07-12 21:23:05,292 Relaxation took 10.3s
2024-07-12 21:23:05,292 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=71 pTM=0.567 ipTM=0.196
2024-07-12 21:23:22,977 Relaxation took 17.7s
2024-07-12 21:23:22,977 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=72.7 pTM=0.581 ipTM=0.192
2024-07-12 21:23:30,528 Relaxation took 7.5s
2024-07-12 21:23:30,528 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=74.6 pTM=0.64 ipTM=0.126
2024-07-12 21:23:31,446 Done