2024-07-13 00:27:26,199 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 00:27:26,549 Running on GPU
2024-07-13 00:27:32,549 Found 6 citations for tools or databases
2024-07-13 00:27:32,549 Query 1/1: SDCB2_CKLF (length 444)
2024-07-13 00:27:33,005 Sleeping for 6s. Reason: PENDING
2024-07-13 00:27:39,422 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:27:45,851 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:27:53,285 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:28:03,741 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:28:14,160 Sleeping for 9s. Reason: RUNNING
2024-07-13 00:28:23,577 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:28:30,989 Sleeping for 5s. Reason: RUNNING
2024-07-13 00:28:36,400 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:28:42,862 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:28:50,300 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:28:57,694 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:29:05,151 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:29:13,065 Sleeping for 9s. Reason: PENDING
2024-07-13 00:29:22,491 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:29:29,903 Sleeping for 9s. Reason: RUNNING
2024-07-13 00:29:39,336 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:29:46,737 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:29:54,772 Setting max_seq=508, max_extra_seq=2048
2024-07-13 00:32:50,799 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=68.6 pTM=0.455 ipTM=0.0965
2024-07-13 00:32:56,993 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.6 pTM=0.47 ipTM=0.111 tol=5.83
2024-07-13 00:33:01,631 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=71.9 pTM=0.485 ipTM=0.162 tol=2.34
2024-07-13 00:33:06,270 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=72.5 pTM=0.484 ipTM=0.181 tol=1.45
2024-07-13 00:33:10,905 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.5 pTM=0.494 ipTM=0.188 tol=4.58
2024-07-13 00:33:15,536 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=73.2 pTM=0.493 ipTM=0.183 tol=0.432
2024-07-13 00:33:15,537 alphafold2_multimer_v3_model_1_seed_000 took 155.5s (5 recycles)
2024-07-13 00:33:20,320 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=68.9 pTM=0.462 ipTM=0.103
2024-07-13 00:33:24,964 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.8 pTM=0.486 ipTM=0.178 tol=4.52
2024-07-13 00:33:29,607 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=73.8 pTM=0.49 ipTM=0.179 tol=1.41
2024-07-13 00:33:34,259 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74 pTM=0.49 ipTM=0.165 tol=1.78
2024-07-13 00:33:38,912 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.2 pTM=0.49 ipTM=0.166 tol=0.871
2024-07-13 00:33:43,563 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=74 pTM=0.488 ipTM=0.159 tol=0.563
2024-07-13 00:33:48,213 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.9 pTM=0.488 ipTM=0.162 tol=0.722
2024-07-13 00:33:52,865 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=73.9 pTM=0.488 ipTM=0.147 tol=1.05
2024-07-13 00:33:57,517 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=73.8 pTM=0.489 ipTM=0.146 tol=0.759
2024-07-13 00:34:02,168 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=74 pTM=0.49 ipTM=0.157 tol=0.65
2024-07-13 00:34:06,819 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=73.8 pTM=0.487 ipTM=0.151 tol=0.725
2024-07-13 00:34:11,468 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=73.6 pTM=0.487 ipTM=0.16 tol=0.581
2024-07-13 00:34:16,120 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=73.7 pTM=0.49 ipTM=0.159 tol=0.569
2024-07-13 00:34:20,773 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=73.8 pTM=0.49 ipTM=0.151 tol=0.505
2024-07-13 00:34:25,430 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=73.9 pTM=0.49 ipTM=0.157 tol=0.588
2024-07-13 00:34:30,080 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=74 pTM=0.492 ipTM=0.156 tol=0.281
2024-07-13 00:34:30,081 alphafold2_multimer_v3_model_2_seed_000 took 74.4s (15 recycles)
2024-07-13 00:34:34,866 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=70.6 pTM=0.492 ipTM=0.107
2024-07-13 00:34:39,527 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.2 pTM=0.497 ipTM=0.137 tol=7.25
2024-07-13 00:34:44,187 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72 pTM=0.503 ipTM=0.146 tol=4.56
2024-07-13 00:34:48,856 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.2 pTM=0.507 ipTM=0.149 tol=0.876
2024-07-13 00:34:53,529 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=72.2 pTM=0.508 ipTM=0.154 tol=0.692
2024-07-13 00:34:58,198 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.5 pTM=0.51 ipTM=0.161 tol=0.965
2024-07-13 00:35:02,866 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.4 pTM=0.511 ipTM=0.163 tol=1.16
2024-07-13 00:35:07,533 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=72.7 pTM=0.512 ipTM=0.16 tol=1.72
2024-07-13 00:35:12,195 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=72.4 pTM=0.511 ipTM=0.161 tol=0.446
2024-07-13 00:35:12,195 alphafold2_multimer_v3_model_3_seed_000 took 42.0s (8 recycles)
2024-07-13 00:35:16,996 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71.9 pTM=0.484 ipTM=0.138
2024-07-13 00:35:21,668 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=72.6 pTM=0.493 ipTM=0.142 tol=5.7
2024-07-13 00:35:26,336 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=72.8 pTM=0.493 ipTM=0.148 tol=5.26
2024-07-13 00:35:31,006 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.5 pTM=0.494 ipTM=0.156 tol=5.14
2024-07-13 00:35:35,677 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.9 pTM=0.497 ipTM=0.151 tol=2.09
2024-07-13 00:35:40,343 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=73.1 pTM=0.5 ipTM=0.157 tol=1.97
2024-07-13 00:35:45,009 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.1 pTM=0.5 ipTM=0.156 tol=1.41
2024-07-13 00:35:49,680 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=73.4 pTM=0.502 ipTM=0.158 tol=0.601
2024-07-13 00:35:54,340 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=73.2 pTM=0.498 ipTM=0.153 tol=0.598
2024-07-13 00:35:59,000 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=73.2 pTM=0.499 ipTM=0.157 tol=0.716
2024-07-13 00:36:03,661 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=73.5 pTM=0.5 ipTM=0.15 tol=1.45
2024-07-13 00:36:08,320 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=73.2 pTM=0.501 ipTM=0.158 tol=0.524
2024-07-13 00:36:12,984 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=73.2 pTM=0.502 ipTM=0.156 tol=0.702
2024-07-13 00:36:17,646 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=73.5 pTM=0.502 ipTM=0.157 tol=0.623
2024-07-13 00:36:22,309 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=73.6 pTM=0.501 ipTM=0.156 tol=0.527
2024-07-13 00:36:26,968 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=73.3 pTM=0.499 ipTM=0.152 tol=0.513
2024-07-13 00:36:31,623 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=73.3 pTM=0.501 ipTM=0.155 tol=0.579
2024-07-13 00:36:36,285 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=73.5 pTM=0.502 ipTM=0.155 tol=0.407
2024-07-13 00:36:36,285 alphafold2_multimer_v3_model_4_seed_000 took 84.0s (17 recycles)
2024-07-13 00:36:41,078 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=68.4 pTM=0.498 ipTM=0.197
2024-07-13 00:36:45,739 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=70.6 pTM=0.479 ipTM=0.13 tol=8.5
2024-07-13 00:36:50,397 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=71.2 pTM=0.499 ipTM=0.159 tol=6.16
2024-07-13 00:36:55,061 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=71.9 pTM=0.505 ipTM=0.179 tol=1.78
2024-07-13 00:36:59,719 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72 pTM=0.505 ipTM=0.161 tol=0.983
2024-07-13 00:37:04,383 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.5 pTM=0.511 ipTM=0.176 tol=0.787
2024-07-13 00:37:09,044 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=72.4 pTM=0.511 ipTM=0.188 tol=0.672
2024-07-13 00:37:13,713 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=72.6 pTM=0.513 ipTM=0.186 tol=0.626
2024-07-13 00:37:18,373 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=72.4 pTM=0.511 ipTM=0.175 tol=0.708
2024-07-13 00:37:23,031 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.4 pTM=0.514 ipTM=0.186 tol=0.729
2024-07-13 00:37:27,689 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.5 pTM=0.509 ipTM=0.179 tol=0.819
2024-07-13 00:37:32,343 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=72.1 pTM=0.509 ipTM=0.182 tol=0.476
2024-07-13 00:37:32,343 alphafold2_multimer_v3_model_5_seed_000 took 55.9s (11 recycles)
2024-07-13 00:37:32,482 reranking models by 'multimer' metric
2024-07-13 00:37:53,307 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 00:38:14,700 Relaxation took 42.2s
2024-07-13 00:38:14,700 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.1 pTM=0.509 ipTM=0.182
2024-07-13 00:38:27,244 Relaxation took 12.5s
2024-07-13 00:38:27,244 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=73.2 pTM=0.493 ipTM=0.183
2024-07-13 00:38:37,792 Relaxation took 10.5s
2024-07-13 00:38:37,792 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=72.4 pTM=0.511 ipTM=0.161
2024-07-13 00:38:48,558 Relaxation took 10.8s
2024-07-13 00:38:48,558 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=73.5 pTM=0.502 ipTM=0.155
2024-07-13 00:38:59,912 Relaxation took 11.4s
2024-07-13 00:38:59,912 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74 pTM=0.492 ipTM=0.156
2024-07-13 00:39:00,879 Done