2024-07-13 00:51:53,294 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 00:51:53,626 Running on GPU
2024-07-13 00:52:02,953 Found 6 citations for tools or databases
2024-07-13 00:52:02,953 Query 1/1: SEM3E_HDAC2 (length 1263)
2024-07-13 00:52:03,407 Sleeping for 8s. Reason: PENDING
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2024-07-13 00:53:21,660 Sleeping for 10s. Reason: RUNNING
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2024-07-13 00:53:55,373 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:54:05,801 Sleeping for 9s. Reason: RUNNING
2024-07-13 00:54:15,221 Sleeping for 8s. Reason: RUNNING
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2024-07-13 00:54:56,365 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:55:06,996 Sleeping for 10s. Reason: PENDING
2024-07-13 00:55:17,431 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:55:23,861 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:55:30,273 Sleeping for 8s. Reason: RUNNING
2024-07-13 00:55:38,701 Sleeping for 9s. Reason: RUNNING
2024-07-13 00:55:48,114 Sleeping for 5s. Reason: RUNNING
2024-07-13 00:55:53,565 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:56:04,016 Sleeping for 6s. Reason: RUNNING
2024-07-13 00:56:10,447 Sleeping for 5s. Reason: RUNNING
2024-07-13 00:56:15,863 Sleeping for 9s. Reason: RUNNING
2024-07-13 00:56:25,282 Sleeping for 8s. Reason: RUNNING
2024-07-13 00:56:33,708 Sleeping for 7s. Reason: RUNNING
2024-07-13 00:56:41,130 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:56:51,545 Sleeping for 9s. Reason: RUNNING
2024-07-13 00:57:00,977 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:57:11,428 Sleeping for 8s. Reason: RUNNING
2024-07-13 00:57:19,867 Sleeping for 10s. Reason: RUNNING
2024-07-13 00:57:34,292 Setting max_seq=508, max_extra_seq=2048
2024-07-13 01:01:20,323 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=73.6 pTM=0.54 ipTM=0.176
2024-07-13 01:02:01,042 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.4 pTM=0.55 ipTM=0.225 tol=9.42
2024-07-13 01:02:41,979 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.5 pTM=0.542 ipTM=0.223 tol=9.47
2024-07-13 01:03:23,040 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.6 pTM=0.542 ipTM=0.224 tol=3.57
2024-07-13 01:04:04,157 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=75.8 pTM=0.545 ipTM=0.23 tol=2.48
2024-07-13 01:04:45,347 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.8 pTM=0.542 ipTM=0.229 tol=3.45
2024-07-13 01:05:26,575 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=75.9 pTM=0.542 ipTM=0.232 tol=2.46
2024-07-13 01:06:07,763 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=76.1 pTM=0.546 ipTM=0.238 tol=7.54
2024-07-13 01:06:48,875 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=76.5 pTM=0.567 ipTM=0.306 tol=6.44
2024-07-13 01:07:29,964 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=76.6 pTM=0.559 ipTM=0.29 tol=4.99
2024-07-13 01:08:11,032 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=76.3 pTM=0.557 ipTM=0.27 tol=2.86
2024-07-13 01:08:52,108 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=76.3 pTM=0.551 ipTM=0.249 tol=3.12
2024-07-13 01:09:33,213 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=76.6 pTM=0.557 ipTM=0.268 tol=3.58
2024-07-13 01:10:14,304 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=76.7 pTM=0.569 ipTM=0.314 tol=2.85
2024-07-13 01:10:55,407 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=76.6 pTM=0.568 ipTM=0.309 tol=1.18
2024-07-13 01:11:36,697 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=76.4 pTM=0.554 ipTM=0.255 tol=1.87
2024-07-13 01:12:17,828 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=76.2 pTM=0.553 ipTM=0.257 tol=2.67
2024-07-13 01:12:58,987 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=76.1 pTM=0.546 ipTM=0.232 tol=3.63
2024-07-13 01:13:40,128 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=76.2 pTM=0.548 ipTM=0.239 tol=3.11
2024-07-13 01:14:21,222 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=76.4 pTM=0.559 ipTM=0.278 tol=2.3
2024-07-13 01:15:02,305 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=76.6 pTM=0.559 ipTM=0.28 tol=3.21
2024-07-13 01:15:43,395 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=76.2 pTM=0.551 ipTM=0.248 tol=2.81
2024-07-13 01:16:24,486 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=76.1 pTM=0.547 ipTM=0.24 tol=2.79
2024-07-13 01:17:05,555 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=76.3 pTM=0.553 ipTM=0.258 tol=2.27
2024-07-13 01:17:46,639 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=76.7 pTM=0.56 ipTM=0.283 tol=2.92
2024-07-13 01:18:27,725 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=76.6 pTM=0.553 ipTM=0.266 tol=2.63
2024-07-13 01:19:08,827 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=76.1 pTM=0.546 ipTM=0.238 tol=2.49
2024-07-13 01:19:49,939 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=76.2 pTM=0.549 ipTM=0.243 tol=2.89
2024-07-13 01:20:31,086 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=76.2 pTM=0.546 ipTM=0.241 tol=2.82
2024-07-13 01:21:12,211 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=76.2 pTM=0.551 ipTM=0.247 tol=3.16
2024-07-13 01:21:53,493 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=76.4 pTM=0.553 ipTM=0.268 tol=4.29
2024-07-13 01:21:53,495 alphafold2_multimer_v3_model_1_seed_000 took 1426.5s (30 recycles)
2024-07-13 01:22:35,710 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=72.6 pTM=0.548 ipTM=0.217
2024-07-13 01:23:16,993 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.9 pTM=0.555 ipTM=0.233 tol=10.8
2024-07-13 01:23:58,332 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.8 pTM=0.554 ipTM=0.24 tol=7.02
2024-07-13 01:24:39,619 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=76.2 pTM=0.552 ipTM=0.239 tol=5.53
2024-07-13 01:25:20,923 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.2 pTM=0.549 ipTM=0.228 tol=3.1
2024-07-13 01:26:02,207 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.2 pTM=0.548 ipTM=0.235 tol=3.95
2024-07-13 01:26:43,550 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.3 pTM=0.544 ipTM=0.224 tol=2.46
2024-07-13 01:27:24,851 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=76.4 pTM=0.548 ipTM=0.232 tol=2.34
2024-07-13 01:28:06,146 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=76.3 pTM=0.546 ipTM=0.222 tol=2.58
2024-07-13 01:28:47,441 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=76.2 pTM=0.546 ipTM=0.227 tol=1.9
2024-07-13 01:29:28,777 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=76.3 pTM=0.548 ipTM=0.227 tol=2.21
2024-07-13 01:30:10,107 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=76.4 pTM=0.55 ipTM=0.232 tol=2.51
2024-07-13 01:30:51,471 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=76.4 pTM=0.548 ipTM=0.228 tol=2.44
2024-07-13 01:31:32,789 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=76.2 pTM=0.549 ipTM=0.231 tol=1.87
2024-07-13 01:32:14,089 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=76.2 pTM=0.549 ipTM=0.232 tol=2.07
2024-07-13 01:32:55,365 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=76.3 pTM=0.55 ipTM=0.233 tol=1.84
2024-07-13 01:33:36,649 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=76.2 pTM=0.546 ipTM=0.232 tol=2.5
2024-07-13 01:34:17,942 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=76.2 pTM=0.548 ipTM=0.232 tol=1.35
2024-07-13 01:34:59,240 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=76.2 pTM=0.547 ipTM=0.23 tol=0.92
2024-07-13 01:35:40,536 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=76.1 pTM=0.546 ipTM=0.23 tol=2.35
2024-07-13 01:36:21,848 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=76.2 pTM=0.547 ipTM=0.228 tol=2.48
2024-07-13 01:37:03,152 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=76.2 pTM=0.549 ipTM=0.238 tol=2.2
2024-07-13 01:37:44,476 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=76.2 pTM=0.545 ipTM=0.224 tol=2.62
2024-07-13 01:38:25,817 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=76.4 pTM=0.55 ipTM=0.234 tol=2.56
2024-07-13 01:39:07,129 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=76.3 pTM=0.549 ipTM=0.228 tol=2.54
2024-07-13 01:39:48,424 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=76.3 pTM=0.551 ipTM=0.233 tol=3.43
2024-07-13 01:40:29,692 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=76.2 pTM=0.547 ipTM=0.226 tol=3.3
2024-07-13 01:41:10,906 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=76.4 pTM=0.552 ipTM=0.236 tol=2.56
2024-07-13 01:41:52,138 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=76.4 pTM=0.549 ipTM=0.226 tol=3.36
2024-07-13 01:42:33,288 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=76.4 pTM=0.552 ipTM=0.234 tol=2.83
2024-07-13 01:43:14,484 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=76.4 pTM=0.545 ipTM=0.224 tol=4.07
2024-07-13 01:43:14,485 alphafold2_multimer_v3_model_2_seed_000 took 1280.0s (30 recycles)
2024-07-13 01:43:56,680 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.6 pTM=0.526 ipTM=0.182
2024-07-13 01:44:37,994 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=74.8 pTM=0.551 ipTM=0.21 tol=10.4
2024-07-13 01:45:19,392 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.1 pTM=0.546 ipTM=0.208 tol=9.33
2024-07-13 01:46:00,797 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.1 pTM=0.544 ipTM=0.215 tol=7.46
2024-07-13 01:46:42,375 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=75.3 pTM=0.546 ipTM=0.219 tol=6.55
2024-07-13 01:47:23,793 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=75.3 pTM=0.542 ipTM=0.21 tol=4.13
2024-07-13 01:48:05,248 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=75.2 pTM=0.542 ipTM=0.221 tol=1.94
2024-07-13 01:48:46,671 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=75.4 pTM=0.544 ipTM=0.223 tol=6.52
2024-07-13 01:49:28,035 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=75.8 pTM=0.541 ipTM=0.216 tol=4.86
2024-07-13 01:50:09,397 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=75.6 pTM=0.54 ipTM=0.202 tol=4.27
2024-07-13 01:50:50,771 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=75.6 pTM=0.544 ipTM=0.211 tol=3.18
2024-07-13 01:51:32,135 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=75.6 pTM=0.539 ipTM=0.197 tol=3.88
2024-07-13 01:52:13,475 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=75.4 pTM=0.542 ipTM=0.207 tol=1.95
2024-07-13 01:52:54,795 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=75.7 pTM=0.542 ipTM=0.211 tol=2.39
2024-07-13 01:53:36,097 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=75.6 pTM=0.543 ipTM=0.211 tol=1.87
2024-07-13 01:54:17,444 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=75.4 pTM=0.542 ipTM=0.204 tol=1.52
2024-07-13 01:54:58,977 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=75.6 pTM=0.545 ipTM=0.216 tol=1.7
2024-07-13 01:55:40,375 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=75.4 pTM=0.539 ipTM=0.199 tol=1.33
2024-07-13 01:56:21,779 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=75.4 pTM=0.543 ipTM=0.21 tol=1.05
2024-07-13 01:57:03,209 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=75.5 pTM=0.538 ipTM=0.196 tol=1.75
2024-07-13 01:57:44,840 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=75.4 pTM=0.542 ipTM=0.202 tol=1.98
2024-07-13 01:58:26,262 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=75.5 pTM=0.545 ipTM=0.216 tol=2.87
2024-07-13 01:59:07,837 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=75.4 pTM=0.538 ipTM=0.197 tol=1.78
2024-07-13 01:59:49,468 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=75.4 pTM=0.543 ipTM=0.208 tol=2.72
2024-07-13 02:00:31,025 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=75.8 pTM=0.548 ipTM=0.228 tol=2.21
2024-07-13 02:01:12,627 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=75.5 pTM=0.538 ipTM=0.197 tol=1.61
2024-07-13 02:01:54,199 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=75.4 pTM=0.541 ipTM=0.208 tol=2.42
2024-07-13 02:02:35,732 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=75.6 pTM=0.544 ipTM=0.217 tol=2.94
2024-07-13 02:03:17,118 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=75.5 pTM=0.536 ipTM=0.191 tol=2.51
2024-07-13 02:03:58,442 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=75.3 pTM=0.545 ipTM=0.226 tol=1.94
2024-07-13 02:04:39,749 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=75.6 pTM=0.538 ipTM=0.201 tol=1.36
2024-07-13 02:04:39,751 alphafold2_multimer_v3_model_3_seed_000 took 1284.3s (30 recycles)
2024-07-13 02:05:21,888 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=72.6 pTM=0.577 ipTM=0.294
2024-07-13 02:06:03,201 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=74.1 pTM=0.542 ipTM=0.215 tol=11.7
2024-07-13 02:06:44,473 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.2 pTM=0.548 ipTM=0.224 tol=9.3
2024-07-13 02:07:25,956 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.4 pTM=0.544 ipTM=0.206 tol=4.79
2024-07-13 02:08:07,346 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.4 pTM=0.545 ipTM=0.216 tol=3.44
2024-07-13 02:08:48,750 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75.2 pTM=0.542 ipTM=0.214 tol=2.84
2024-07-13 02:09:30,015 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=76.4 pTM=0.607 ipTM=0.42 tol=4.65
2024-07-13 02:10:11,500 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76.3 pTM=0.572 ipTM=0.314 tol=3.21
2024-07-13 02:10:53,054 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=75.6 pTM=0.554 ipTM=0.251 tol=4.2
2024-07-13 02:11:34,450 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.6 pTM=0.552 ipTM=0.242 tol=2.22
2024-07-13 02:12:15,789 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=76.1 pTM=0.577 ipTM=0.337 tol=3.87
2024-07-13 02:12:57,115 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=75.8 pTM=0.551 ipTM=0.243 tol=2.48
2024-07-13 02:13:38,507 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=75.4 pTM=0.547 ipTM=0.222 tol=4.46
2024-07-13 02:14:19,910 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=75.2 pTM=0.543 ipTM=0.216 tol=3.26
2024-07-13 02:15:01,150 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=76.8 pTM=0.643 ipTM=0.522 tol=5.82
2024-07-13 02:15:42,427 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=76.5 pTM=0.587 ipTM=0.384 tol=2.78
2024-07-13 02:16:23,708 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=76 pTM=0.58 ipTM=0.342 tol=3.08
2024-07-13 02:17:05,032 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=75.9 pTM=0.56 ipTM=0.278 tol=1.09
2024-07-13 02:17:46,362 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=75.9 pTM=0.57 ipTM=0.307 tol=1.35
2024-07-13 02:18:27,863 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=75.8 pTM=0.556 ipTM=0.266 tol=1.18
2024-07-13 02:19:09,387 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.4 pTM=0.551 ipTM=0.235 tol=2.88
2024-07-13 02:19:50,736 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=75.6 pTM=0.554 ipTM=0.251 tol=2.41
2024-07-13 02:20:32,048 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=76.1 pTM=0.574 ipTM=0.341 tol=2.41
2024-07-13 02:21:13,360 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=76.2 pTM=0.564 ipTM=0.286 tol=1.08
2024-07-13 02:21:54,730 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=75.5 pTM=0.548 ipTM=0.229 tol=5.5
2024-07-13 02:22:36,123 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=75.5 pTM=0.542 ipTM=0.219 tol=2.34
2024-07-13 02:23:17,408 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=76.4 pTM=0.6 ipTM=0.407 tol=5.26
2024-07-13 02:23:58,711 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=76.2 pTM=0.56 ipTM=0.286 tol=2.4
2024-07-13 02:24:40,048 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=75.7 pTM=0.55 ipTM=0.24 tol=4.28
2024-07-13 02:25:21,393 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=75.8 pTM=0.55 ipTM=0.245 tol=3.25
2024-07-13 02:26:02,706 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=76.2 pTM=0.578 ipTM=0.352 tol=2.28
2024-07-13 02:26:02,707 alphafold2_multimer_v3_model_4_seed_000 took 1282.0s (30 recycles)
2024-07-13 02:26:44,875 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.9 pTM=0.549 ipTM=0.204
2024-07-13 02:27:26,269 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=74.6 pTM=0.536 ipTM=0.189 tol=6.98
2024-07-13 02:28:07,627 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.1 pTM=0.543 ipTM=0.208 tol=5.75
2024-07-13 02:28:49,001 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.3 pTM=0.542 ipTM=0.219 tol=4.18
2024-07-13 02:29:30,436 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=75.4 pTM=0.542 ipTM=0.223 tol=8.34
2024-07-13 02:30:11,846 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=75.3 pTM=0.541 ipTM=0.22 tol=5.09
2024-07-13 02:30:53,284 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=75.5 pTM=0.54 ipTM=0.217 tol=4.66
2024-07-13 02:31:34,735 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=75.4 pTM=0.541 ipTM=0.216 tol=4.43
2024-07-13 02:32:16,222 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=75.4 pTM=0.538 ipTM=0.212 tol=1.98
2024-07-13 02:32:57,698 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=75.4 pTM=0.539 ipTM=0.209 tol=1.42
2024-07-13 02:33:39,181 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=75.5 pTM=0.539 ipTM=0.209 tol=2.19
2024-07-13 02:34:20,631 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=75.6 pTM=0.537 ipTM=0.203 tol=1.92
2024-07-13 02:35:02,075 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=75.5 pTM=0.542 ipTM=0.22 tol=1.54
2024-07-13 02:35:43,500 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=75.5 pTM=0.541 ipTM=0.214 tol=1.66
2024-07-13 02:36:24,919 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=75.5 pTM=0.542 ipTM=0.219 tol=1.87
2024-07-13 02:37:06,349 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=75.6 pTM=0.543 ipTM=0.219 tol=1.89
2024-07-13 02:37:47,785 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=75.5 pTM=0.541 ipTM=0.215 tol=1.36
2024-07-13 02:38:29,242 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=75.5 pTM=0.541 ipTM=0.213 tol=2.97
2024-07-13 02:39:10,659 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=75.5 pTM=0.542 ipTM=0.219 tol=2.73
2024-07-13 02:39:52,108 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=75.4 pTM=0.541 ipTM=0.21 tol=2.15
2024-07-13 02:40:33,573 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=75.6 pTM=0.543 ipTM=0.214 tol=1.51
2024-07-13 02:41:15,029 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=75.4 pTM=0.541 ipTM=0.215 tol=1.82
2024-07-13 02:41:56,480 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=75.4 pTM=0.54 ipTM=0.212 tol=1.14
2024-07-13 02:42:37,951 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=75.5 pTM=0.544 ipTM=0.22 tol=1.17
2024-07-13 02:43:19,689 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=75.6 pTM=0.541 ipTM=0.214 tol=1.09
2024-07-13 02:44:01,245 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=75.5 pTM=0.54 ipTM=0.213 tol=1.31
2024-07-13 02:44:42,913 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=75.6 pTM=0.541 ipTM=0.212 tol=1.99
2024-07-13 02:45:24,368 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=75.5 pTM=0.541 ipTM=0.215 tol=3.43
2024-07-13 02:46:05,774 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=75.5 pTM=0.542 ipTM=0.218 tol=2.89
2024-07-13 02:46:47,179 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=75.5 pTM=0.542 ipTM=0.218 tol=1.83
2024-07-13 02:47:28,606 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=75.4 pTM=0.539 ipTM=0.211 tol=2.66
2024-07-13 02:47:28,607 alphafold2_multimer_v3_model_5_seed_000 took 1285.0s (30 recycles)
2024-07-13 02:47:29,553 reranking models by 'multimer' metric
2024-07-13 02:47:30,949 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 02:49:35,309 Relaxation took 125.8s
2024-07-13 02:49:35,310 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.2 pTM=0.578 ipTM=0.352
2024-07-13 02:51:21,963 Relaxation took 106.7s
2024-07-13 02:51:21,963 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.4 pTM=0.553 ipTM=0.268
2024-07-13 02:54:11,663 Relaxation took 169.7s
2024-07-13 02:54:11,664 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.4 pTM=0.545 ipTM=0.224
2024-07-13 02:56:53,445 Relaxation took 161.8s
2024-07-13 02:56:53,445 rank_004_alphafold2_multimer_v3_model_5_seed_000 pLDDT=75.4 pTM=0.539 ipTM=0.211
2024-07-13 02:59:00,174 Relaxation took 126.7s
2024-07-13 02:59:00,174 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=75.6 pTM=0.538 ipTM=0.201
2024-07-13 02:59:09,980 Done