2024-07-13 09:07:47,475 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 09:07:47,853 Running on GPU
2024-07-13 09:08:03,614 Found 6 citations for tools or databases
2024-07-13 09:08:03,614 Query 1/1: SYDM_KR213 (length 703)
2024-07-13 09:08:04,069 Sleeping for 5s. Reason: PENDING
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2024-07-13 09:10:21,331 Sleeping for 6s. Reason: PENDING
2024-07-13 09:10:27,762 Sleeping for 5s. Reason: RUNNING
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2024-07-13 09:11:45,627 Sleeping for 10s. Reason: RUNNING
2024-07-13 09:11:59,607 Setting max_seq=508, max_extra_seq=1555
2024-07-13 09:15:32,147 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=80.2 pTM=0.813 ipTM=0.201
2024-07-13 09:15:41,739 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=81 pTM=0.822 ipTM=0.237 tol=3.16
2024-07-13 09:15:51,335 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=81.2 pTM=0.823 ipTM=0.262 tol=2.52
2024-07-13 09:16:00,947 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.5 pTM=0.824 ipTM=0.279 tol=0.922
2024-07-13 09:16:10,571 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.6 pTM=0.826 ipTM=0.292 tol=0.545
2024-07-13 09:16:20,205 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.5 pTM=0.825 ipTM=0.288 tol=0.49
2024-07-13 09:16:20,206 alphafold2_multimer_v3_model_1_seed_000 took 216.1s (5 recycles)
2024-07-13 09:16:30,157 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=79.9 pTM=0.811 ipTM=0.216
2024-07-13 09:16:39,814 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.8 pTM=0.824 ipTM=0.285 tol=3.45
2024-07-13 09:16:49,478 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=80.8 pTM=0.823 ipTM=0.282 tol=1.9
2024-07-13 09:16:59,148 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81 pTM=0.824 ipTM=0.3 tol=1.34
2024-07-13 09:17:08,818 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=80.9 pTM=0.825 ipTM=0.299 tol=0.859
2024-07-13 09:17:18,506 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.1 pTM=0.826 ipTM=0.309 tol=0.707
2024-07-13 09:17:28,169 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=81.2 pTM=0.826 ipTM=0.334 tol=1.12
2024-07-13 09:17:37,829 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=81.4 pTM=0.829 ipTM=0.351 tol=0.62
2024-07-13 09:17:47,511 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=81.5 pTM=0.828 ipTM=0.357 tol=0.345
2024-07-13 09:17:47,512 alphafold2_multimer_v3_model_2_seed_000 took 87.0s (8 recycles)
2024-07-13 09:17:57,467 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=80.4 pTM=0.806 ipTM=0.224
2024-07-13 09:18:07,133 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=80.6 pTM=0.824 ipTM=0.341 tol=5.18
2024-07-13 09:18:16,805 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=80.7 pTM=0.827 ipTM=0.357 tol=1.29
2024-07-13 09:18:26,453 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=80.6 pTM=0.826 ipTM=0.358 tol=0.826
2024-07-13 09:18:36,108 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=80.7 pTM=0.826 ipTM=0.358 tol=0.509
2024-07-13 09:18:45,733 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=80.6 pTM=0.827 ipTM=0.372 tol=0.427
2024-07-13 09:18:45,733 alphafold2_multimer_v3_model_3_seed_000 took 57.9s (5 recycles)
2024-07-13 09:18:57,282 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=81.2 pTM=0.819 ipTM=0.296
2024-07-13 09:19:06,980 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=81.3 pTM=0.82 ipTM=0.245 tol=4.96
2024-07-13 09:19:16,677 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=80.9 pTM=0.822 ipTM=0.267 tol=1.85
2024-07-13 09:19:26,377 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=81.1 pTM=0.821 ipTM=0.257 tol=1.55
2024-07-13 09:19:36,062 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=80.8 pTM=0.821 ipTM=0.265 tol=1
2024-07-13 09:19:45,732 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=80.7 pTM=0.821 ipTM=0.27 tol=0.745
2024-07-13 09:19:55,411 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=80.8 pTM=0.822 ipTM=0.275 tol=0.808
2024-07-13 09:20:05,086 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=80.9 pTM=0.821 ipTM=0.272 tol=0.633
2024-07-13 09:20:14,763 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=80.7 pTM=0.821 ipTM=0.277 tol=0.632
2024-07-13 09:20:24,444 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=80.8 pTM=0.82 ipTM=0.271 tol=1.36
2024-07-13 09:20:34,124 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=80.5 pTM=0.821 ipTM=0.27 tol=0.643
2024-07-13 09:20:43,794 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=80.6 pTM=0.82 ipTM=0.272 tol=0.564
2024-07-13 09:20:53,470 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=80.4 pTM=0.821 ipTM=0.277 tol=0.856
2024-07-13 09:21:03,142 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=80.6 pTM=0.82 ipTM=0.273 tol=0.693
2024-07-13 09:21:12,837 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=80.8 pTM=0.822 ipTM=0.272 tol=0.923
2024-07-13 09:21:22,500 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=80.8 pTM=0.82 ipTM=0.271 tol=0.856
2024-07-13 09:21:32,182 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=80.5 pTM=0.821 ipTM=0.277 tol=0.506
2024-07-13 09:21:41,847 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=80.6 pTM=0.821 ipTM=0.276 tol=0.535
2024-07-13 09:21:51,534 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=80.6 pTM=0.821 ipTM=0.272 tol=0.692
2024-07-13 09:22:01,208 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=80.6 pTM=0.819 ipTM=0.269 tol=0.586
2024-07-13 09:22:10,875 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=80.6 pTM=0.821 ipTM=0.275 tol=1.05
2024-07-13 09:22:20,540 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=80.5 pTM=0.819 ipTM=0.267 tol=0.581
2024-07-13 09:22:30,224 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=80.6 pTM=0.822 ipTM=0.276 tol=0.903
2024-07-13 09:22:39,897 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=80.6 pTM=0.82 ipTM=0.264 tol=0.849
2024-07-13 09:22:49,580 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=80.5 pTM=0.819 ipTM=0.263 tol=0.923
2024-07-13 09:22:59,254 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=80.6 pTM=0.82 ipTM=0.266 tol=0.835
2024-07-13 09:23:08,935 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=80.7 pTM=0.822 ipTM=0.275 tol=1.07
2024-07-13 09:23:18,607 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=80.6 pTM=0.818 ipTM=0.256 tol=0.902
2024-07-13 09:23:28,284 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=80.6 pTM=0.82 ipTM=0.264 tol=0.652
2024-07-13 09:23:37,962 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=80.6 pTM=0.819 ipTM=0.255 tol=0.816
2024-07-13 09:23:47,640 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=80.6 pTM=0.82 ipTM=0.264 tol=0.88
2024-07-13 09:23:47,641 alphafold2_multimer_v3_model_4_seed_000 took 300.1s (30 recycles)
2024-07-13 09:23:57,608 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=79.3 pTM=0.811 ipTM=0.257
2024-07-13 09:24:07,294 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=79.7 pTM=0.821 ipTM=0.299 tol=2.42
2024-07-13 09:24:16,968 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=79.9 pTM=0.824 ipTM=0.309 tol=3.04
2024-07-13 09:24:26,651 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=80.3 pTM=0.825 ipTM=0.309 tol=0.74
2024-07-13 09:24:36,326 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=80.3 pTM=0.825 ipTM=0.304 tol=0.779
2024-07-13 09:24:45,998 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=80.2 pTM=0.826 ipTM=0.325 tol=0.787
2024-07-13 09:24:55,678 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=80.4 pTM=0.825 ipTM=0.312 tol=0.54
2024-07-13 09:25:05,353 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=80.3 pTM=0.826 ipTM=0.315 tol=0.805
2024-07-13 09:25:15,029 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=80.3 pTM=0.825 ipTM=0.31 tol=0.613
2024-07-13 09:25:24,706 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=80.3 pTM=0.825 ipTM=0.316 tol=0.475
2024-07-13 09:25:24,706 alphafold2_multimer_v3_model_5_seed_000 took 96.8s (9 recycles)
2024-07-13 09:25:25,016 reranking models by 'multimer' metric
2024-07-13 09:25:42,005 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 09:26:37,041 Relaxation took 72.0s
2024-07-13 09:26:37,041 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=80.6 pTM=0.827 ipTM=0.372
2024-07-13 09:27:29,216 Relaxation took 52.2s
2024-07-13 09:27:29,216 rank_002_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.5 pTM=0.828 ipTM=0.357
2024-07-13 09:28:09,477 Relaxation took 40.3s
2024-07-13 09:28:09,477 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=80.3 pTM=0.825 ipTM=0.316
2024-07-13 09:29:08,950 Relaxation took 59.5s
2024-07-13 09:29:08,950 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.5 pTM=0.825 ipTM=0.288
2024-07-13 09:30:00,275 Relaxation took 51.3s
2024-07-13 09:30:00,275 rank_005_alphafold2_multimer_v3_model_4_seed_000 pLDDT=80.6 pTM=0.82 ipTM=0.264
2024-07-13 09:30:01,568 Done