2024-07-13 11:04:46,729 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 11:04:47,049 Running on GPU
2024-07-13 11:04:56,026 Found 6 citations for tools or databases
2024-07-13 11:04:56,027 Query 1/1: TAF13_U2QL1 (length 285)
2024-07-13 11:04:56,478 Sleeping for 10s. Reason: PENDING
2024-07-13 11:05:06,910 Sleeping for 8s. Reason: RUNNING
2024-07-13 11:05:15,340 Sleeping for 9s. Reason: RUNNING
2024-07-13 11:05:24,756 Sleeping for 9s. Reason: RUNNING
2024-07-13 11:05:35,671 Sleeping for 6s. Reason: PENDING
2024-07-13 11:05:42,099 Sleeping for 10s. Reason: RUNNING
2024-07-13 11:05:52,529 Sleeping for 10s. Reason: RUNNING
2024-07-13 11:06:06,272 Setting max_seq=508, max_extra_seq=2048
2024-07-13 11:09:39,688 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.3 pTM=0.521 ipTM=0.113
2024-07-13 11:09:42,209 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=65.4 pTM=0.471 ipTM=0.101 tol=4.8
2024-07-13 11:09:44,724 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=63.7 pTM=0.468 ipTM=0.107 tol=2.04
2024-07-13 11:09:47,238 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=64 pTM=0.466 ipTM=0.116 tol=2.27
2024-07-13 11:09:49,750 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=63.5 pTM=0.459 ipTM=0.116 tol=2.89
2024-07-13 11:09:52,264 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=62.3 pTM=0.449 ipTM=0.115 tol=0.989
2024-07-13 11:09:54,778 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=63.5 pTM=0.464 ipTM=0.118 tol=0.878
2024-07-13 11:09:57,292 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=63.9 pTM=0.469 ipTM=0.117 tol=1.56
2024-07-13 11:09:59,806 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=65.7 pTM=0.48 ipTM=0.121 tol=0.929
2024-07-13 11:10:02,317 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=65.2 pTM=0.48 ipTM=0.125 tol=0.888
2024-07-13 11:10:04,830 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=64.3 pTM=0.469 ipTM=0.113 tol=2.93
2024-07-13 11:10:07,341 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=64.8 pTM=0.471 ipTM=0.12 tol=1.19
2024-07-13 11:10:09,854 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=65.2 pTM=0.476 ipTM=0.123 tol=0.786
2024-07-13 11:10:12,364 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=65.9 pTM=0.482 ipTM=0.131 tol=2.59
2024-07-13 11:10:14,878 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=66.4 pTM=0.486 ipTM=0.125 tol=1.8
2024-07-13 11:10:17,391 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=63.5 pTM=0.469 ipTM=0.122 tol=0.79
2024-07-13 11:10:19,904 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=65.8 pTM=0.478 ipTM=0.124 tol=1.35
2024-07-13 11:10:22,417 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=63.8 pTM=0.464 ipTM=0.117 tol=1.15
2024-07-13 11:10:24,930 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=63.5 pTM=0.464 ipTM=0.115 tol=1.24
2024-07-13 11:10:27,442 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=62.1 pTM=0.466 ipTM=0.115 tol=1.64
2024-07-13 11:10:29,955 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=62.7 pTM=0.461 ipTM=0.116 tol=1.16
2024-07-13 11:10:32,469 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=63.7 pTM=0.47 ipTM=0.119 tol=1.42
2024-07-13 11:10:34,983 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=64.6 pTM=0.477 ipTM=0.119 tol=1.49
2024-07-13 11:10:37,495 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=64.9 pTM=0.475 ipTM=0.122 tol=1.17
2024-07-13 11:10:40,009 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=64.1 pTM=0.475 ipTM=0.127 tol=1.2
2024-07-13 11:10:42,522 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=65.6 pTM=0.478 ipTM=0.12 tol=1.61
2024-07-13 11:10:45,034 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=65.9 pTM=0.484 ipTM=0.127 tol=1.18
2024-07-13 11:10:47,549 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=65.9 pTM=0.478 ipTM=0.116 tol=1.82
2024-07-13 11:10:50,064 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=64.8 pTM=0.476 ipTM=0.123 tol=1.05
2024-07-13 11:10:52,580 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=64.9 pTM=0.473 ipTM=0.121 tol=0.696
2024-07-13 11:10:55,094 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=63.1 pTM=0.468 ipTM=0.122 tol=0.654
2024-07-13 11:10:55,528 alphafold2_multimer_v3_model_1_seed_000 took 241.8s (30 recycles)
2024-07-13 11:10:58,120 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=69.9 pTM=0.477 ipTM=0.093
2024-07-13 11:11:00,637 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=69.8 pTM=0.471 ipTM=0.103 tol=4.22
2024-07-13 11:11:03,154 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=69.6 pTM=0.48 ipTM=0.111 tol=2.35
2024-07-13 11:11:05,668 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=71.1 pTM=0.491 ipTM=0.122 tol=1.38
2024-07-13 11:11:08,184 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=69.4 pTM=0.48 ipTM=0.114 tol=2.21
2024-07-13 11:11:10,697 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=69.4 pTM=0.482 ipTM=0.117 tol=1.82
2024-07-13 11:11:13,212 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=71.2 pTM=0.498 ipTM=0.137 tol=1.79
2024-07-13 11:11:15,728 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=71.9 pTM=0.504 ipTM=0.121 tol=0.988
2024-07-13 11:11:18,244 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=72.1 pTM=0.503 ipTM=0.124 tol=1.1
2024-07-13 11:11:20,760 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=72.3 pTM=0.503 ipTM=0.12 tol=1.18
2024-07-13 11:11:23,276 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=70.6 pTM=0.491 ipTM=0.114 tol=3.22
2024-07-13 11:11:25,792 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=72.8 pTM=0.506 ipTM=0.136 tol=5.29
2024-07-13 11:11:28,307 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=71.9 pTM=0.5 ipTM=0.12 tol=0.884
2024-07-13 11:11:30,826 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=73.1 pTM=0.512 ipTM=0.133 tol=1.82
2024-07-13 11:11:33,344 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=72.6 pTM=0.507 ipTM=0.114 tol=2.38
2024-07-13 11:11:35,860 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=72 pTM=0.498 ipTM=0.111 tol=0.86
2024-07-13 11:11:38,379 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=72.6 pTM=0.505 ipTM=0.11 tol=1.59
2024-07-13 11:11:40,896 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=71.8 pTM=0.503 ipTM=0.114 tol=1.22
2024-07-13 11:11:43,414 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=72.4 pTM=0.507 ipTM=0.124 tol=1.37
2024-07-13 11:11:45,928 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=71.5 pTM=0.5 ipTM=0.125 tol=0.713
2024-07-13 11:11:48,444 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=71.7 pTM=0.498 ipTM=0.122 tol=1.84
2024-07-13 11:11:50,960 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=73.1 pTM=0.511 ipTM=0.127 tol=1.61
2024-07-13 11:11:53,477 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=72.5 pTM=0.505 ipTM=0.12 tol=0.783
2024-07-13 11:11:55,992 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=71.9 pTM=0.5 ipTM=0.116 tol=1.05
2024-07-13 11:11:58,510 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=72.3 pTM=0.506 ipTM=0.134 tol=0.713
2024-07-13 11:12:01,026 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=72.9 pTM=0.506 ipTM=0.13 tol=0.503
2024-07-13 11:12:03,543 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=71.6 pTM=0.502 ipTM=0.123 tol=1.21
2024-07-13 11:12:06,056 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=71.9 pTM=0.502 ipTM=0.122 tol=2.96
2024-07-13 11:12:08,571 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=72.3 pTM=0.505 ipTM=0.125 tol=2.28
2024-07-13 11:12:11,084 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=72.1 pTM=0.503 ipTM=0.116 tol=0.955
2024-07-13 11:12:13,600 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=72 pTM=0.501 ipTM=0.121 tol=1.87
2024-07-13 11:12:13,601 alphafold2_multimer_v3_model_2_seed_000 took 78.0s (30 recycles)
2024-07-13 11:12:16,181 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=68.8 pTM=0.501 ipTM=0.095
2024-07-13 11:12:18,701 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=67.4 pTM=0.474 ipTM=0.11 tol=3.31
2024-07-13 11:12:21,216 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=69.8 pTM=0.48 ipTM=0.105 tol=3.16
2024-07-13 11:12:23,738 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.8 pTM=0.498 ipTM=0.136 tol=1.51
2024-07-13 11:12:26,253 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.8 pTM=0.487 ipTM=0.114 tol=2.05
2024-07-13 11:12:28,776 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70.3 pTM=0.497 ipTM=0.128 tol=1.44
2024-07-13 11:12:31,289 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=70.2 pTM=0.49 ipTM=0.121 tol=1.23
2024-07-13 11:12:33,814 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=70.2 pTM=0.499 ipTM=0.124 tol=1.37
2024-07-13 11:12:36,330 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=70.5 pTM=0.491 ipTM=0.12 tol=1.06
2024-07-13 11:12:38,852 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=70.7 pTM=0.493 ipTM=0.123 tol=0.511
2024-07-13 11:12:41,367 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=69.2 pTM=0.482 ipTM=0.108 tol=0.764
2024-07-13 11:12:43,888 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=70.3 pTM=0.494 ipTM=0.129 tol=1
2024-07-13 11:12:46,403 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=70.6 pTM=0.491 ipTM=0.124 tol=1.07
2024-07-13 11:12:48,926 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=70.9 pTM=0.49 ipTM=0.124 tol=0.879
2024-07-13 11:12:51,439 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=71.4 pTM=0.495 ipTM=0.122 tol=0.655
2024-07-13 11:12:53,962 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=71.7 pTM=0.5 ipTM=0.13 tol=0.381
2024-07-13 11:12:53,963 alphafold2_multimer_v3_model_3_seed_000 took 40.3s (15 recycles)
2024-07-13 11:12:56,548 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71.3 pTM=0.532 ipTM=0.107
2024-07-13 11:12:59,069 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.1 pTM=0.511 ipTM=0.124 tol=5.14
2024-07-13 11:13:01,582 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.8 pTM=0.52 ipTM=0.128 tol=3.35
2024-07-13 11:13:04,105 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.4 pTM=0.522 ipTM=0.128 tol=0.927
2024-07-13 11:13:06,619 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.2 pTM=0.514 ipTM=0.119 tol=1.15
2024-07-13 11:13:09,140 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=71.4 pTM=0.517 ipTM=0.128 tol=0.727
2024-07-13 11:13:11,655 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.9 pTM=0.521 ipTM=0.125 tol=0.443
2024-07-13 11:13:11,655 alphafold2_multimer_v3_model_4_seed_000 took 17.6s (6 recycles)
2024-07-13 11:13:14,244 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.1 pTM=0.516 ipTM=0.0905
2024-07-13 11:13:16,759 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.8 pTM=0.494 ipTM=0.092 tol=4.31
2024-07-13 11:13:19,273 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=67.9 pTM=0.498 ipTM=0.0884 tol=2.05
2024-07-13 11:13:21,787 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=67.6 pTM=0.493 ipTM=0.0882 tol=2.55
2024-07-13 11:13:24,299 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=66.9 pTM=0.489 ipTM=0.0931 tol=1.48
2024-07-13 11:13:26,814 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=65.5 pTM=0.485 ipTM=0.0965 tol=3.33
2024-07-13 11:13:29,326 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=66.1 pTM=0.488 ipTM=0.102 tol=1.33
2024-07-13 11:13:31,839 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=66.8 pTM=0.494 ipTM=0.101 tol=1.02
2024-07-13 11:13:34,359 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=68.2 pTM=0.495 ipTM=0.0989 tol=1.69
2024-07-13 11:13:36,871 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=67.9 pTM=0.497 ipTM=0.0992 tol=1.96
2024-07-13 11:13:39,385 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=67 pTM=0.483 ipTM=0.0917 tol=1.24
2024-07-13 11:13:41,897 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=65.8 pTM=0.479 ipTM=0.1 tol=1.48
2024-07-13 11:13:44,409 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=66.8 pTM=0.483 ipTM=0.0942 tol=1.02
2024-07-13 11:13:46,922 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=68.1 pTM=0.494 ipTM=0.0988 tol=0.996
2024-07-13 11:13:49,437 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=68.5 pTM=0.497 ipTM=0.0977 tol=0.803
2024-07-13 11:13:51,951 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=67.9 pTM=0.49 ipTM=0.0969 tol=0.385
2024-07-13 11:13:51,951 alphafold2_multimer_v3_model_5_seed_000 took 40.2s (15 recycles)
2024-07-13 11:13:52,020 reranking models by 'multimer' metric
2024-07-13 11:14:06,361 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 11:14:18,507 Relaxation took 26.5s
2024-07-13 11:14:18,507 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.9 pTM=0.521 ipTM=0.125
2024-07-13 11:14:23,790 Relaxation took 5.3s
2024-07-13 11:14:23,790 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71.7 pTM=0.5 ipTM=0.13
2024-07-13 11:14:28,771 Relaxation took 5.0s
2024-07-13 11:14:28,771 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=72 pTM=0.501 ipTM=0.121
2024-07-13 11:14:37,438 Relaxation took 8.7s
2024-07-13 11:14:37,438 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=63.1 pTM=0.468 ipTM=0.122
2024-07-13 11:14:42,676 Relaxation took 5.2s
2024-07-13 11:14:42,676 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=67.9 pTM=0.49 ipTM=0.0969
2024-07-13 11:14:43,533 Done