2024-07-13 13:57:47,395 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 13:57:55,614 Running on GPU
2024-07-13 13:58:12,415 Found 6 citations for tools or databases
2024-07-13 13:58:12,416 Query 1/1: TM208_O52E1 (length 481)
2024-07-13 13:58:12,925 Sleeping for 5s. Reason: PENDING
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2024-07-13 13:59:40,762 Sleeping for 6s. Reason: PENDING
2024-07-13 13:59:47,180 Sleeping for 5s. Reason: RUNNING
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2024-07-13 14:01:04,785 Setting max_seq=508, max_extra_seq=2048
2024-07-13 14:05:58,218 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.2 pTM=0.603 ipTM=0.137
2024-07-13 14:06:05,681 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=70.9 pTM=0.601 ipTM=0.127 tol=7.89
2024-07-13 14:06:13,132 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=70.2 pTM=0.603 ipTM=0.144 tol=2.62
2024-07-13 14:06:20,594 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=72.2 pTM=0.612 ipTM=0.152 tol=0.75
2024-07-13 14:06:28,042 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=71.7 pTM=0.613 ipTM=0.153 tol=0.478
2024-07-13 14:06:28,042 alphafold2_multimer_v3_model_1_seed_000 took 269.3s (4 recycles)
2024-07-13 14:06:35,721 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.9 pTM=0.613 ipTM=0.158
2024-07-13 14:06:43,178 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=71.3 pTM=0.609 ipTM=0.162 tol=2.89
2024-07-13 14:06:50,624 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=71.6 pTM=0.608 ipTM=0.151 tol=7.46
2024-07-13 14:06:58,089 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=73.8 pTM=0.616 ipTM=0.154 tol=5.18
2024-07-13 14:07:05,546 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=73.6 pTM=0.619 ipTM=0.153 tol=2.33
2024-07-13 14:07:13,011 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=72.6 pTM=0.617 ipTM=0.152 tol=2.21
2024-07-13 14:07:20,466 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=73.9 pTM=0.615 ipTM=0.147 tol=1.83
2024-07-13 14:07:27,932 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=73.8 pTM=0.615 ipTM=0.148 tol=0.53
2024-07-13 14:07:35,386 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=73.6 pTM=0.615 ipTM=0.149 tol=0.615
2024-07-13 14:07:42,849 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=73.7 pTM=0.616 ipTM=0.152 tol=0.452
2024-07-13 14:07:42,850 alphafold2_multimer_v3_model_2_seed_000 took 74.6s (9 recycles)
2024-07-13 14:07:50,542 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=72.1 pTM=0.62 ipTM=0.174
2024-07-13 14:07:58,007 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=72.4 pTM=0.617 ipTM=0.195 tol=6.38
2024-07-13 14:08:05,456 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=72.4 pTM=0.599 ipTM=0.15 tol=2.22
2024-07-13 14:08:12,912 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=73.4 pTM=0.603 ipTM=0.15 tol=1.53
2024-07-13 14:08:20,365 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=74.6 pTM=0.609 ipTM=0.145 tol=0.833
2024-07-13 14:08:27,822 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=74.5 pTM=0.608 ipTM=0.148 tol=0.714
2024-07-13 14:08:35,269 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=74.3 pTM=0.604 ipTM=0.138 tol=0.688
2024-07-13 14:08:42,735 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=75.4 pTM=0.611 ipTM=0.141 tol=1.13
2024-07-13 14:08:50,186 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=74.6 pTM=0.604 ipTM=0.136 tol=0.334
2024-07-13 14:08:50,187 alphafold2_multimer_v3_model_3_seed_000 took 67.1s (8 recycles)
2024-07-13 14:08:57,870 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71.9 pTM=0.643 ipTM=0.247
2024-07-13 14:09:05,347 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=72.5 pTM=0.593 ipTM=0.11 tol=8.32
2024-07-13 14:09:12,805 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.9 pTM=0.605 ipTM=0.143 tol=6.55
2024-07-13 14:09:20,274 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=72.8 pTM=0.606 ipTM=0.141 tol=2.64
2024-07-13 14:09:27,736 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.8 pTM=0.612 ipTM=0.15 tol=3.76
2024-07-13 14:09:35,203 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=72.9 pTM=0.607 ipTM=0.144 tol=2.98
2024-07-13 14:09:42,660 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=73.2 pTM=0.609 ipTM=0.152 tol=2.48
2024-07-13 14:09:50,130 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=72.8 pTM=0.604 ipTM=0.138 tol=1.25
2024-07-13 14:09:57,586 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=72.2 pTM=0.605 ipTM=0.147 tol=1.1
2024-07-13 14:10:05,051 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=72 pTM=0.601 ipTM=0.141 tol=1.62
2024-07-13 14:10:12,509 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=72.2 pTM=0.607 ipTM=0.149 tol=2.4
2024-07-13 14:10:19,974 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=71.9 pTM=0.604 ipTM=0.147 tol=1.18
2024-07-13 14:10:27,431 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=72.2 pTM=0.611 ipTM=0.156 tol=1.75
2024-07-13 14:10:34,897 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=72.6 pTM=0.609 ipTM=0.153 tol=2.2
2024-07-13 14:10:42,347 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=72.2 pTM=0.608 ipTM=0.158 tol=2.04
2024-07-13 14:10:49,812 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=72.1 pTM=0.603 ipTM=0.151 tol=2.39
2024-07-13 14:10:57,264 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=72.3 pTM=0.605 ipTM=0.151 tol=1.13
2024-07-13 14:11:04,728 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=71.9 pTM=0.604 ipTM=0.148 tol=0.748
2024-07-13 14:11:12,182 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.3 pTM=0.606 ipTM=0.152 tol=0.886
2024-07-13 14:11:19,651 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=72.4 pTM=0.603 ipTM=0.146 tol=3.55
2024-07-13 14:11:27,110 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=72.2 pTM=0.607 ipTM=0.153 tol=3.58
2024-07-13 14:11:34,578 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72.2 pTM=0.604 ipTM=0.146 tol=2.18
2024-07-13 14:11:42,036 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=72.5 pTM=0.609 ipTM=0.155 tol=1.77
2024-07-13 14:11:49,506 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=72 pTM=0.608 ipTM=0.151 tol=2.05
2024-07-13 14:11:56,967 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=72.2 pTM=0.609 ipTM=0.153 tol=1.12
2024-07-13 14:12:04,438 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=72 pTM=0.607 ipTM=0.149 tol=2.25
2024-07-13 14:12:11,897 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=72 pTM=0.608 ipTM=0.156 tol=0.81
2024-07-13 14:12:19,366 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=72.3 pTM=0.61 ipTM=0.156 tol=0.601
2024-07-13 14:12:26,825 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=72.1 pTM=0.608 ipTM=0.153 tol=1.29
2024-07-13 14:12:34,293 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=71.8 pTM=0.608 ipTM=0.154 tol=0.772
2024-07-13 14:12:41,750 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=71.9 pTM=0.606 ipTM=0.152 tol=1.38
2024-07-13 14:12:41,750 alphafold2_multimer_v3_model_4_seed_000 took 231.3s (30 recycles)
2024-07-13 14:12:49,439 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.9 pTM=0.607 ipTM=0.145
2024-07-13 14:12:56,903 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.6 pTM=0.599 ipTM=0.156 tol=4.59
2024-07-13 14:13:04,363 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=71.2 pTM=0.61 ipTM=0.153 tol=1.12
2024-07-13 14:13:11,833 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.3 pTM=0.612 ipTM=0.152 tol=1.67
2024-07-13 14:13:19,294 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.2 pTM=0.615 ipTM=0.161 tol=0.517
2024-07-13 14:13:26,763 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=72.1 pTM=0.615 ipTM=0.159 tol=0.489
2024-07-13 14:13:26,764 alphafold2_multimer_v3_model_5_seed_000 took 44.8s (5 recycles)
2024-07-13 14:13:28,995 reranking models by 'multimer' metric
2024-07-13 14:13:43,927 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 14:14:10,008 Relaxation took 41.0s
2024-07-13 14:14:10,008 rank_001_alphafold2_multimer_v3_model_5_seed_000 pLDDT=72.1 pTM=0.615 ipTM=0.159
2024-07-13 14:14:29,121 Relaxation took 19.1s
2024-07-13 14:14:29,121 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=71.7 pTM=0.613 ipTM=0.153
2024-07-13 14:15:12,611 Relaxation took 43.5s
2024-07-13 14:15:12,611 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=73.7 pTM=0.616 ipTM=0.152
2024-07-13 14:19:16,228 Relaxation took 243.6s
2024-07-13 14:19:16,228 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=71.9 pTM=0.606 ipTM=0.152
2024-07-13 14:19:51,488 Relaxation took 35.3s
2024-07-13 14:19:51,488 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=74.6 pTM=0.604 ipTM=0.136
2024-07-13 14:19:53,750 Done