2024-07-13 16:31:48,454 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 16:31:48,777 Running on GPU
2024-07-13 16:31:55,383 Found 6 citations for tools or databases
2024-07-13 16:31:55,383 Query 1/1: TOR2X_CPN2 (length 787)
2024-07-13 16:31:55,858 Sleeping for 6s. Reason: PENDING
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2024-07-13 16:34:24,842 Sleeping for 8s. Reason: PENDING
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2024-07-13 16:35:01,972 Sleeping for 9s. Reason: RUNNING
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2024-07-13 16:35:29,241 Sleeping for 7s. Reason: RUNNING
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2024-07-13 16:35:51,177 Setting max_seq=508, max_extra_seq=2048
2024-07-13 16:39:14,983 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=69.2 pTM=0.6 ipTM=0.221
2024-07-13 16:39:27,508 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.5 pTM=0.597 ipTM=0.224 tol=6.65
2024-07-13 16:39:40,079 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=71.2 pTM=0.596 ipTM=0.224 tol=5.62
2024-07-13 16:39:52,649 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=71.5 pTM=0.598 ipTM=0.232 tol=3.65
2024-07-13 16:40:05,222 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=74.2 pTM=0.63 ipTM=0.382 tol=6.52
2024-07-13 16:40:17,804 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=75.2 pTM=0.636 ipTM=0.379 tol=2.21
2024-07-13 16:40:30,390 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=74.3 pTM=0.622 ipTM=0.34 tol=1.31
2024-07-13 16:40:42,976 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=74.8 pTM=0.625 ipTM=0.354 tol=1.07
2024-07-13 16:40:55,582 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=75.1 pTM=0.636 ipTM=0.375 tol=1.63
2024-07-13 16:41:08,183 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=75.2 pTM=0.639 ipTM=0.377 tol=2.37
2024-07-13 16:41:20,795 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=75.3 pTM=0.643 ipTM=0.397 tol=1.33
2024-07-13 16:41:33,414 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=76 pTM=0.652 ipTM=0.432 tol=1.54
2024-07-13 16:41:46,025 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=75.9 pTM=0.656 ipTM=0.434 tol=1.12
2024-07-13 16:41:58,632 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=76.4 pTM=0.668 ipTM=0.458 tol=0.659
2024-07-13 16:42:11,240 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=76.5 pTM=0.67 ipTM=0.466 tol=0.575
2024-07-13 16:42:23,871 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=76.6 pTM=0.671 ipTM=0.469 tol=0.364
2024-07-13 16:42:23,871 alphafold2_multimer_v3_model_1_seed_000 took 351.2s (15 recycles)
2024-07-13 16:42:36,955 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=70.1 pTM=0.623 ipTM=0.275
2024-07-13 16:42:49,652 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=74.2 pTM=0.646 ipTM=0.421 tol=6.69
2024-07-13 16:43:02,349 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.4 pTM=0.641 ipTM=0.39 tol=4.59
2024-07-13 16:43:15,038 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.4 pTM=0.643 ipTM=0.393 tol=3.37
2024-07-13 16:43:27,722 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=75.9 pTM=0.634 ipTM=0.365 tol=2.71
2024-07-13 16:43:40,415 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.4 pTM=0.641 ipTM=0.369 tol=9.17
2024-07-13 16:43:53,094 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=76.1 pTM=0.637 ipTM=0.351 tol=0.807
2024-07-13 16:44:05,755 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=75.8 pTM=0.63 ipTM=0.344 tol=0.524
2024-07-13 16:44:18,443 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=75.8 pTM=0.636 ipTM=0.353 tol=0.363
2024-07-13 16:44:18,444 alphafold2_multimer_v3_model_2_seed_000 took 114.2s (8 recycles)
2024-07-13 16:44:31,563 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=69 pTM=0.595 ipTM=0.212
2024-07-13 16:44:44,291 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=71.6 pTM=0.61 ipTM=0.232 tol=14.2
2024-07-13 16:44:57,015 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=73.3 pTM=0.607 ipTM=0.237 tol=10.3
2024-07-13 16:45:09,745 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=72.6 pTM=0.601 ipTM=0.231 tol=2.76
2024-07-13 16:45:22,461 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=72.9 pTM=0.599 ipTM=0.227 tol=2.36
2024-07-13 16:45:35,186 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=72.3 pTM=0.601 ipTM=0.227 tol=2.06
2024-07-13 16:45:47,940 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=72.4 pTM=0.601 ipTM=0.225 tol=1.53
2024-07-13 16:46:00,676 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=70.8 pTM=0.598 ipTM=0.211 tol=9.42
2024-07-13 16:46:13,411 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=71.7 pTM=0.598 ipTM=0.212 tol=8.82
2024-07-13 16:46:26,147 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=72.2 pTM=0.599 ipTM=0.215 tol=4.36
2024-07-13 16:46:38,872 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=71.8 pTM=0.6 ipTM=0.219 tol=11.9
2024-07-13 16:46:51,587 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=71.8 pTM=0.601 ipTM=0.222 tol=1.89
2024-07-13 16:47:04,306 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=71.1 pTM=0.601 ipTM=0.215 tol=2.07
2024-07-13 16:47:17,026 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=71.6 pTM=0.603 ipTM=0.22 tol=2.25
2024-07-13 16:47:29,762 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=71.5 pTM=0.599 ipTM=0.21 tol=9.17
2024-07-13 16:47:42,500 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=71.6 pTM=0.6 ipTM=0.212 tol=5.91
2024-07-13 16:47:55,220 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=71.9 pTM=0.598 ipTM=0.219 tol=3.39
2024-07-13 16:48:07,958 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=71.5 pTM=0.6 ipTM=0.214 tol=3.54
2024-07-13 16:48:20,700 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=71.9 pTM=0.598 ipTM=0.218 tol=1.88
2024-07-13 16:48:33,399 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=71.1 pTM=0.601 ipTM=0.22 tol=11.9
2024-07-13 16:48:46,114 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=71 pTM=0.597 ipTM=0.213 tol=10.2
2024-07-13 16:48:58,843 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=71.4 pTM=0.599 ipTM=0.214 tol=9.89
2024-07-13 16:49:11,567 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=71.6 pTM=0.597 ipTM=0.218 tol=2.42
2024-07-13 16:49:24,300 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=70.9 pTM=0.6 ipTM=0.212 tol=7.67
2024-07-13 16:49:37,036 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=71.3 pTM=0.599 ipTM=0.213 tol=5.57
2024-07-13 16:49:49,760 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=70.9 pTM=0.6 ipTM=0.214 tol=9.31
2024-07-13 16:50:02,484 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=70.9 pTM=0.597 ipTM=0.211 tol=5.92
2024-07-13 16:50:15,213 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=71 pTM=0.598 ipTM=0.22 tol=5.77
2024-07-13 16:50:27,938 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=71 pTM=0.597 ipTM=0.208 tol=9.51
2024-07-13 16:50:40,669 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=71.3 pTM=0.6 ipTM=0.214 tol=5.42
2024-07-13 16:50:53,396 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=71.4 pTM=0.598 ipTM=0.222 tol=2.29
2024-07-13 16:50:53,396 alphafold2_multimer_v3_model_3_seed_000 took 394.6s (30 recycles)
2024-07-13 16:51:06,511 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=69.1 pTM=0.609 ipTM=0.231
2024-07-13 16:51:19,216 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=71.1 pTM=0.624 ipTM=0.245 tol=10.4
2024-07-13 16:51:31,918 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.6 pTM=0.623 ipTM=0.231 tol=2.96
2024-07-13 16:51:44,626 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=71.9 pTM=0.611 ipTM=0.226 tol=2.72
2024-07-13 16:51:57,330 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=71.6 pTM=0.611 ipTM=0.226 tol=3.3
2024-07-13 16:52:10,023 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=72 pTM=0.613 ipTM=0.237 tol=1.67
2024-07-13 16:52:22,710 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=71.7 pTM=0.612 ipTM=0.227 tol=1.01
2024-07-13 16:52:35,399 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=71.7 pTM=0.611 ipTM=0.235 tol=1.41
2024-07-13 16:52:48,095 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=72.2 pTM=0.61 ipTM=0.232 tol=2.05
2024-07-13 16:53:00,785 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=72.4 pTM=0.615 ipTM=0.249 tol=1.53
2024-07-13 16:53:13,488 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=72.4 pTM=0.612 ipTM=0.234 tol=1.5
2024-07-13 16:53:26,186 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=71.9 pTM=0.611 ipTM=0.234 tol=1.26
2024-07-13 16:53:38,883 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=71.9 pTM=0.612 ipTM=0.233 tol=0.957
2024-07-13 16:53:51,570 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=71.9 pTM=0.613 ipTM=0.232 tol=1.07
2024-07-13 16:54:04,266 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=72.2 pTM=0.612 ipTM=0.233 tol=1.49
2024-07-13 16:54:16,960 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=71.9 pTM=0.611 ipTM=0.229 tol=2.19
2024-07-13 16:54:29,651 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=72.1 pTM=0.612 ipTM=0.238 tol=1.38
2024-07-13 16:54:42,339 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=72.7 pTM=0.612 ipTM=0.241 tol=1.61
2024-07-13 16:54:55,028 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=72.1 pTM=0.611 ipTM=0.24 tol=1.4
2024-07-13 16:55:07,721 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=72.6 pTM=0.613 ipTM=0.254 tol=1.19
2024-07-13 16:55:20,405 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=72.3 pTM=0.614 ipTM=0.251 tol=0.682
2024-07-13 16:55:33,095 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=72 pTM=0.611 ipTM=0.235 tol=0.836
2024-07-13 16:55:45,791 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=71.6 pTM=0.612 ipTM=0.229 tol=0.904
2024-07-13 16:55:58,481 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=72.4 pTM=0.615 ipTM=0.26 tol=1.3
2024-07-13 16:56:11,166 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=72.4 pTM=0.615 ipTM=0.252 tol=0.801
2024-07-13 16:56:23,857 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=71.9 pTM=0.612 ipTM=0.239 tol=1.23
2024-07-13 16:56:36,549 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=72.1 pTM=0.613 ipTM=0.243 tol=0.736
2024-07-13 16:56:49,228 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=72.5 pTM=0.617 ipTM=0.277 tol=0.854
2024-07-13 16:57:01,915 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=72.2 pTM=0.612 ipTM=0.245 tol=1.45
2024-07-13 16:57:14,601 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=72.2 pTM=0.615 ipTM=0.25 tol=0.974
2024-07-13 16:57:27,285 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=72.2 pTM=0.612 ipTM=0.24 tol=0.936
2024-07-13 16:57:27,286 alphafold2_multimer_v3_model_4_seed_000 took 393.5s (30 recycles)
2024-07-13 16:57:40,398 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=69.2 pTM=0.597 ipTM=0.212
2024-07-13 16:57:53,103 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=71.1 pTM=0.613 ipTM=0.218 tol=8.45
2024-07-13 16:58:05,801 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=72.1 pTM=0.612 ipTM=0.267 tol=7.7
2024-07-13 16:58:18,481 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=72.6 pTM=0.609 ipTM=0.249 tol=3.37
2024-07-13 16:58:31,174 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=72.6 pTM=0.608 ipTM=0.244 tol=1.94
2024-07-13 16:58:43,856 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=73.3 pTM=0.614 ipTM=0.29 tol=2.22
2024-07-13 16:58:56,538 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=73.1 pTM=0.613 ipTM=0.283 tol=1.2
2024-07-13 16:59:09,209 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=73.2 pTM=0.615 ipTM=0.291 tol=1.13
2024-07-13 16:59:21,889 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=73.3 pTM=0.615 ipTM=0.286 tol=1.61
2024-07-13 16:59:34,580 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=73.4 pTM=0.618 ipTM=0.303 tol=1.49
2024-07-13 16:59:47,275 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=73.1 pTM=0.619 ipTM=0.295 tol=1.3
2024-07-13 16:59:59,961 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=73.4 pTM=0.622 ipTM=0.316 tol=1.16
2024-07-13 17:00:12,643 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=73.3 pTM=0.625 ipTM=0.317 tol=1.43
2024-07-13 17:00:25,324 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=73.4 pTM=0.632 ipTM=0.342 tol=2.23
2024-07-13 17:00:38,015 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=73.7 pTM=0.632 ipTM=0.332 tol=2.65
2024-07-13 17:00:50,701 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=73.7 pTM=0.632 ipTM=0.341 tol=3.34
2024-07-13 17:01:03,384 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=73.3 pTM=0.626 ipTM=0.319 tol=1.51
2024-07-13 17:01:16,055 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=73.8 pTM=0.637 ipTM=0.358 tol=1.51
2024-07-13 17:01:28,726 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=73.8 pTM=0.636 ipTM=0.351 tol=0.802
2024-07-13 17:01:41,411 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=73.5 pTM=0.635 ipTM=0.349 tol=0.833
2024-07-13 17:01:54,088 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=73.6 pTM=0.638 ipTM=0.355 tol=0.806
2024-07-13 17:02:06,765 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=73.9 pTM=0.646 ipTM=0.381 tol=0.466
2024-07-13 17:02:06,766 alphafold2_multimer_v3_model_5_seed_000 took 279.1s (21 recycles)
2024-07-13 17:02:07,157 reranking models by 'multimer' metric
2024-07-13 17:02:36,849 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 17:03:07,204 Relaxation took 60.0s
2024-07-13 17:03:07,204 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.6 pTM=0.671 ipTM=0.469
2024-07-13 17:03:41,793 Relaxation took 34.6s
2024-07-13 17:03:41,793 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=73.9 pTM=0.646 ipTM=0.381
2024-07-13 17:04:02,135 Relaxation took 20.3s
2024-07-13 17:04:02,135 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=75.8 pTM=0.636 ipTM=0.353
2024-07-13 17:04:24,022 Relaxation took 21.9s
2024-07-13 17:04:24,022 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=72.2 pTM=0.612 ipTM=0.24
2024-07-13 17:05:17,209 Relaxation took 53.2s
2024-07-13 17:05:17,209 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=71.4 pTM=0.598 ipTM=0.222
2024-07-13 17:05:18,623 Done