2024-07-13 20:37:00,384 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 20:37:00,800 Running on GPU
2024-07-13 20:37:11,755 Found 6 citations for tools or databases
2024-07-13 20:37:11,755 Query 1/1: TVA2_AGM1 (length 654)
2024-07-13 20:37:12,211 Sleeping for 10s. Reason: PENDING
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2024-07-13 20:38:52,363 Sleeping for 6s. Reason: RUNNING
2024-07-13 20:39:00,415 Sleeping for 7s. Reason: PENDING
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2024-07-13 20:40:03,077 Setting max_seq=508, max_extra_seq=2048
2024-07-13 20:43:10,552 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=84.3 pTM=0.791 ipTM=0.136
2024-07-13 20:43:19,412 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=84.8 pTM=0.791 ipTM=0.129 tol=2.89
2024-07-13 20:43:28,261 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=84.9 pTM=0.787 ipTM=0.125 tol=4.14
2024-07-13 20:43:37,131 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=85.7 pTM=0.789 ipTM=0.128 tol=7.39
2024-07-13 20:43:46,008 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=85.9 pTM=0.79 ipTM=0.135 tol=3.85
2024-07-13 20:43:54,874 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=85.9 pTM=0.79 ipTM=0.14 tol=4.35
2024-07-13 20:44:03,749 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=85.9 pTM=0.79 ipTM=0.141 tol=1.07
2024-07-13 20:44:12,637 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=86.1 pTM=0.791 ipTM=0.137 tol=0.531
2024-07-13 20:44:21,517 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=86.2 pTM=0.791 ipTM=0.14 tol=0.6
2024-07-13 20:44:30,405 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=86.3 pTM=0.79 ipTM=0.136 tol=1.14
2024-07-13 20:44:39,309 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=86.1 pTM=0.791 ipTM=0.137 tol=0.566
2024-07-13 20:44:48,197 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=86.2 pTM=0.788 ipTM=0.135 tol=1.5
2024-07-13 20:44:57,083 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=85.9 pTM=0.789 ipTM=0.138 tol=1.63
2024-07-13 20:45:05,980 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=86.1 pTM=0.789 ipTM=0.135 tol=0.441
2024-07-13 20:45:05,980 alphafold2_multimer_v3_model_1_seed_000 took 267.7s (13 recycles)
2024-07-13 20:45:15,180 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=83.6 pTM=0.787 ipTM=0.149
2024-07-13 20:45:24,118 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=83.7 pTM=0.796 ipTM=0.174 tol=4.55
2024-07-13 20:45:33,044 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=84.4 pTM=0.792 ipTM=0.137 tol=3.76
2024-07-13 20:45:41,991 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=84.5 pTM=0.796 ipTM=0.139 tol=1.96
2024-07-13 20:45:50,933 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=84.4 pTM=0.794 ipTM=0.135 tol=1.32
2024-07-13 20:45:59,872 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=84.4 pTM=0.795 ipTM=0.141 tol=1.98
2024-07-13 20:46:08,807 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=84.7 pTM=0.794 ipTM=0.139 tol=1.8
2024-07-13 20:46:17,747 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=84.5 pTM=0.795 ipTM=0.143 tol=2
2024-07-13 20:46:26,668 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=84.7 pTM=0.795 ipTM=0.144 tol=2.19
2024-07-13 20:46:35,595 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=84.4 pTM=0.796 ipTM=0.15 tol=1.35
2024-07-13 20:46:44,528 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=84.5 pTM=0.795 ipTM=0.146 tol=1.18
2024-07-13 20:46:53,453 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=84.2 pTM=0.795 ipTM=0.155 tol=1.53
2024-07-13 20:47:02,369 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=84.4 pTM=0.795 ipTM=0.152 tol=1.5
2024-07-13 20:47:11,287 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=84.1 pTM=0.795 ipTM=0.153 tol=1.39
2024-07-13 20:47:20,205 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=84.5 pTM=0.794 ipTM=0.146 tol=1.55
2024-07-13 20:47:29,123 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=84 pTM=0.795 ipTM=0.159 tol=1.97
2024-07-13 20:47:38,040 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=84.5 pTM=0.794 ipTM=0.151 tol=1.59
2024-07-13 20:47:46,955 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=84.1 pTM=0.795 ipTM=0.154 tol=1.06
2024-07-13 20:47:55,871 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=84.5 pTM=0.795 ipTM=0.151 tol=0.941
2024-07-13 20:48:04,778 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=84 pTM=0.796 ipTM=0.158 tol=1.06
2024-07-13 20:48:13,695 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=84.2 pTM=0.795 ipTM=0.151 tol=1.08
2024-07-13 20:48:22,625 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=84.1 pTM=0.795 ipTM=0.155 tol=1.2
2024-07-13 20:48:31,542 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=84.3 pTM=0.797 ipTM=0.155 tol=1.29
2024-07-13 20:48:40,452 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=83.9 pTM=0.796 ipTM=0.16 tol=1.23
2024-07-13 20:48:49,362 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=84 pTM=0.795 ipTM=0.156 tol=1.1
2024-07-13 20:48:58,270 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=83.5 pTM=0.795 ipTM=0.161 tol=1.12
2024-07-13 20:49:07,179 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=84.1 pTM=0.795 ipTM=0.153 tol=1.25
2024-07-13 20:49:16,088 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=83.5 pTM=0.795 ipTM=0.161 tol=0.958
2024-07-13 20:49:24,984 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=83.9 pTM=0.792 ipTM=0.154 tol=1.02
2024-07-13 20:49:33,889 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=83.4 pTM=0.794 ipTM=0.157 tol=0.897
2024-07-13 20:49:42,789 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=83.8 pTM=0.793 ipTM=0.15 tol=0.74
2024-07-13 20:49:42,790 alphafold2_multimer_v3_model_2_seed_000 took 276.5s (30 recycles)
2024-07-13 20:49:52,039 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=86.1 pTM=0.792 ipTM=0.16
2024-07-13 20:50:01,007 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=86.5 pTM=0.794 ipTM=0.16 tol=6.48
2024-07-13 20:50:09,958 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=85.8 pTM=0.792 ipTM=0.147 tol=4.62
2024-07-13 20:50:18,909 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=85.8 pTM=0.793 ipTM=0.163 tol=1.47
2024-07-13 20:50:27,846 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=85.4 pTM=0.793 ipTM=0.16 tol=0.502
2024-07-13 20:50:36,786 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=85.1 pTM=0.793 ipTM=0.163 tol=2.96
2024-07-13 20:50:45,734 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=85.4 pTM=0.793 ipTM=0.16 tol=0.996
2024-07-13 20:50:54,682 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=85.2 pTM=0.795 ipTM=0.167 tol=0.859
2024-07-13 20:51:03,617 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=85.3 pTM=0.795 ipTM=0.168 tol=1.3
2024-07-13 20:51:12,552 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=85.2 pTM=0.794 ipTM=0.172 tol=0.667
2024-07-13 20:51:21,517 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=85.2 pTM=0.796 ipTM=0.169 tol=0.433
2024-07-13 20:51:21,517 alphafold2_multimer_v3_model_3_seed_000 took 98.5s (10 recycles)
2024-07-13 20:51:30,712 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=84.9 pTM=0.792 ipTM=0.267
2024-07-13 20:51:39,674 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=85.6 pTM=0.795 ipTM=0.144 tol=3.42
2024-07-13 20:51:48,614 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=84.8 pTM=0.794 ipTM=0.17 tol=5.79
2024-07-13 20:51:57,541 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=86.2 pTM=0.818 ipTM=0.412 tol=2.65
2024-07-13 20:52:06,490 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=86.9 pTM=0.812 ipTM=0.315 tol=3.44
2024-07-13 20:52:15,428 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=84.8 pTM=0.796 ipTM=0.196 tol=4.02
2024-07-13 20:52:24,353 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=84.3 pTM=0.797 ipTM=0.202 tol=1.26
2024-07-13 20:52:33,283 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=84.6 pTM=0.796 ipTM=0.193 tol=0.711
2024-07-13 20:52:42,191 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=85.1 pTM=0.803 ipTM=0.29 tol=1.76
2024-07-13 20:52:51,106 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=86.1 pTM=0.803 ipTM=0.265 tol=2.58
2024-07-13 20:53:00,043 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=85.1 pTM=0.796 ipTM=0.189 tol=2.97
2024-07-13 20:53:08,962 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=84.8 pTM=0.798 ipTM=0.202 tol=0.783
2024-07-13 20:53:17,874 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=84.2 pTM=0.791 ipTM=0.171 tol=1.4
2024-07-13 20:53:26,787 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=83.8 pTM=0.793 ipTM=0.172 tol=1.44
2024-07-13 20:53:35,690 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=83.9 pTM=0.786 ipTM=0.15 tol=0.631
2024-07-13 20:53:44,614 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=83.8 pTM=0.794 ipTM=0.173 tol=1.09
2024-07-13 20:53:53,517 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=83.7 pTM=0.788 ipTM=0.151 tol=1.67
2024-07-13 20:54:02,429 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=83.8 pTM=0.793 ipTM=0.168 tol=1.38
2024-07-13 20:54:11,328 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=84.2 pTM=0.788 ipTM=0.147 tol=1.25
2024-07-13 20:54:20,236 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=83.8 pTM=0.795 ipTM=0.179 tol=0.851
2024-07-13 20:54:29,143 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=83.9 pTM=0.789 ipTM=0.148 tol=1.32
2024-07-13 20:54:38,053 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=83.8 pTM=0.794 ipTM=0.171 tol=1.29
2024-07-13 20:54:46,964 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=83.6 pTM=0.79 ipTM=0.152 tol=1.56
2024-07-13 20:54:55,885 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=83.5 pTM=0.793 ipTM=0.167 tol=1.64
2024-07-13 20:55:04,788 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=83.5 pTM=0.79 ipTM=0.157 tol=1.13
2024-07-13 20:55:13,688 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=83.4 pTM=0.792 ipTM=0.168 tol=1.2
2024-07-13 20:55:22,596 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=83.8 pTM=0.791 ipTM=0.159 tol=1.04
2024-07-13 20:55:31,491 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=83.4 pTM=0.792 ipTM=0.167 tol=1.14
2024-07-13 20:55:40,384 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=83.6 pTM=0.789 ipTM=0.155 tol=1.25
2024-07-13 20:55:49,277 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=83.2 pTM=0.792 ipTM=0.173 tol=1.23
2024-07-13 20:55:58,178 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=83.3 pTM=0.79 ipTM=0.159 tol=0.829
2024-07-13 20:55:58,178 alphafold2_multimer_v3_model_4_seed_000 took 276.4s (30 recycles)
2024-07-13 20:56:10,565 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=85.4 pTM=0.789 ipTM=0.147
2024-07-13 20:56:19,521 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=85.8 pTM=0.79 ipTM=0.142 tol=5.52
2024-07-13 20:56:28,459 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=85.9 pTM=0.786 ipTM=0.132 tol=2.34
2024-07-13 20:56:37,403 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=86.1 pTM=0.789 ipTM=0.138 tol=2.32
2024-07-13 20:56:46,360 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=86.2 pTM=0.791 ipTM=0.135 tol=1.41
2024-07-13 20:56:55,312 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=86.4 pTM=0.791 ipTM=0.136 tol=0.776
2024-07-13 20:57:04,249 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=86.3 pTM=0.791 ipTM=0.135 tol=1.13
2024-07-13 20:57:13,201 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=86.3 pTM=0.792 ipTM=0.132 tol=0.447
2024-07-13 20:57:13,202 alphafold2_multimer_v3_model_5_seed_000 took 71.6s (7 recycles)
2024-07-13 20:57:13,470 reranking models by 'multimer' metric
2024-07-13 20:57:30,906 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 20:58:27,998 Relaxation took 74.5s
2024-07-13 20:58:27,998 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=85.2 pTM=0.796 ipTM=0.169
2024-07-13 20:59:13,648 Relaxation took 45.6s
2024-07-13 20:59:13,648 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=83.3 pTM=0.79 ipTM=0.159
2024-07-13 20:59:31,614 Relaxation took 18.0s
2024-07-13 20:59:31,614 rank_003_alphafold2_multimer_v3_model_2_seed_000 pLDDT=83.8 pTM=0.793 ipTM=0.15
2024-07-13 21:00:08,117 Relaxation took 36.5s
2024-07-13 21:00:08,117 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=86.1 pTM=0.789 ipTM=0.135
2024-07-13 21:00:28,064 Relaxation took 19.9s
2024-07-13 21:00:28,065 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=86.3 pTM=0.792 ipTM=0.132
2024-07-13 21:00:29,282 Done