2024-07-13 21:02:00,814 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 21:02:01,171 Running on GPU
2024-07-13 21:02:12,476 Found 6 citations for tools or databases
2024-07-13 21:02:12,476 Query 1/1: TVA6_VISL1 (length 323)
2024-07-13 21:02:12,956 Sleeping for 5s. Reason: PENDING
2024-07-13 21:02:18,372 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:02:26,783 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:02:33,196 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:02:39,625 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:02:45,047 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:02:53,462 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:03:03,905 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:03:10,329 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:03:23,523 Sleeping for 5s. Reason: PENDING
2024-07-13 21:03:28,941 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:03:39,391 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:03:48,836 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:03:55,266 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:04:01,695 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:04:10,811 Setting max_seq=508, max_extra_seq=2048
2024-07-13 21:07:49,248 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=65.6 pTM=0.55 ipTM=0.22
2024-07-13 21:07:52,197 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=69.5 pTM=0.583 ipTM=0.371 tol=2.07
2024-07-13 21:07:55,144 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=68.4 pTM=0.568 ipTM=0.302 tol=1.22
2024-07-13 21:07:58,096 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=67.9 pTM=0.566 ipTM=0.247 tol=0.836
2024-07-13 21:08:01,043 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=69.3 pTM=0.572 ipTM=0.267 tol=0.725
2024-07-13 21:08:03,993 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=69.2 pTM=0.571 ipTM=0.301 tol=0.891
2024-07-13 21:08:06,934 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=68.7 pTM=0.567 ipTM=0.299 tol=0.699
2024-07-13 21:08:09,870 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=69.9 pTM=0.588 ipTM=0.342 tol=0.83
2024-07-13 21:08:12,808 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=71.2 pTM=0.601 ipTM=0.483 tol=0.647
2024-07-13 21:08:15,743 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=71.2 pTM=0.597 ipTM=0.493 tol=0.261
2024-07-13 21:08:15,744 alphafold2_multimer_v3_model_1_seed_000 took 189.0s (9 recycles)
2024-07-13 21:08:18,789 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=71.6 pTM=0.591 ipTM=0.231
2024-07-13 21:08:21,745 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=72.2 pTM=0.585 ipTM=0.285 tol=1.77
2024-07-13 21:08:24,684 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=72.3 pTM=0.58 ipTM=0.294 tol=0.767
2024-07-13 21:08:27,621 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=72.1 pTM=0.576 ipTM=0.286 tol=0.282
2024-07-13 21:08:27,622 alphafold2_multimer_v3_model_2_seed_000 took 11.8s (3 recycles)
2024-07-13 21:08:30,656 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=69.4 pTM=0.565 ipTM=0.21
2024-07-13 21:08:33,602 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=70.4 pTM=0.563 ipTM=0.223 tol=1.34
2024-07-13 21:08:36,549 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=70.4 pTM=0.561 ipTM=0.2 tol=2.43
2024-07-13 21:08:39,492 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.1 pTM=0.555 ipTM=0.201 tol=1.78
2024-07-13 21:08:42,441 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.6 pTM=0.562 ipTM=0.192 tol=0.669
2024-07-13 21:08:45,384 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=70 pTM=0.557 ipTM=0.181 tol=1.48
2024-07-13 21:08:48,329 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=70.1 pTM=0.561 ipTM=0.2 tol=0.551
2024-07-13 21:08:51,269 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=70 pTM=0.561 ipTM=0.217 tol=1.26
2024-07-13 21:08:54,207 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=69.7 pTM=0.562 ipTM=0.213 tol=0.513
2024-07-13 21:08:57,146 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=69.5 pTM=0.56 ipTM=0.218 tol=0.551
2024-07-13 21:09:00,092 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=69.8 pTM=0.566 ipTM=0.216 tol=0.677
2024-07-13 21:09:03,034 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=69.7 pTM=0.565 ipTM=0.23 tol=1
2024-07-13 21:09:05,976 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=69.4 pTM=0.563 ipTM=0.225 tol=0.756
2024-07-13 21:09:08,915 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=69.2 pTM=0.561 ipTM=0.214 tol=0.345
2024-07-13 21:09:08,915 alphafold2_multimer_v3_model_3_seed_000 took 41.2s (13 recycles)
2024-07-13 21:09:11,961 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=70.4 pTM=0.592 ipTM=0.244
2024-07-13 21:09:14,901 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=70.8 pTM=0.611 ipTM=0.373 tol=2.91
2024-07-13 21:09:17,839 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=71.2 pTM=0.595 ipTM=0.361 tol=1.74
2024-07-13 21:09:20,777 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=70.9 pTM=0.59 ipTM=0.348 tol=0.618
2024-07-13 21:09:23,718 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=72.1 pTM=0.598 ipTM=0.421 tol=0.415
2024-07-13 21:09:23,718 alphafold2_multimer_v3_model_4_seed_000 took 14.7s (4 recycles)
2024-07-13 21:09:26,756 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=71.3 pTM=0.616 ipTM=0.551
2024-07-13 21:09:29,708 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=69.7 pTM=0.589 ipTM=0.211 tol=2.95
2024-07-13 21:09:32,659 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=69.9 pTM=0.589 ipTM=0.266 tol=1.53
2024-07-13 21:09:35,626 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=70 pTM=0.582 ipTM=0.289 tol=1.06
2024-07-13 21:09:38,591 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=71.1 pTM=0.591 ipTM=0.386 tol=0.467
2024-07-13 21:09:38,591 alphafold2_multimer_v3_model_5_seed_000 took 14.8s (4 recycles)
2024-07-13 21:09:38,671 reranking models by 'multimer' metric
2024-07-13 21:09:44,018 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 21:10:09,753 Relaxation took 31.1s
2024-07-13 21:10:09,753 rank_001_alphafold2_multimer_v3_model_1_seed_000 pLDDT=71.2 pTM=0.597 ipTM=0.493
2024-07-13 21:10:18,225 Relaxation took 8.5s
2024-07-13 21:10:18,225 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=72.1 pTM=0.598 ipTM=0.421
2024-07-13 21:11:29,454 Relaxation took 71.2s
2024-07-13 21:11:29,454 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=71.1 pTM=0.591 ipTM=0.386
2024-07-13 21:11:36,161 Relaxation took 6.7s
2024-07-13 21:11:36,162 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=72.1 pTM=0.576 ipTM=0.286
2024-07-13 21:11:53,422 Relaxation took 17.3s
2024-07-13 21:11:53,422 rank_005_alphafold2_multimer_v3_model_3_seed_000 pLDDT=69.2 pTM=0.561 ipTM=0.214
2024-07-13 21:11:54,293 Done