2024-07-13 21:21:36,145 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 21:21:41,767 Running on GPU
2024-07-13 21:21:58,240 Found 6 citations for tools or databases
2024-07-13 21:21:58,240 Query 1/1: TVB56_RPC8 (length 318)
2024-07-13 21:21:58,722 Sleeping for 7s. Reason: PENDING
2024-07-13 21:22:06,162 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:22:14,588 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:22:20,018 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:22:29,020 Sleeping for 9s. Reason: PENDING
2024-07-13 21:22:38,460 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:22:48,870 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:22:59,843 Setting max_seq=508, max_extra_seq=2048
2024-07-13 21:27:37,366 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=58.6 pTM=0.4 ipTM=0.13
2024-07-13 21:27:41,846 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=61.9 pTM=0.464 ipTM=0.132 tol=9.12
2024-07-13 21:27:46,320 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=62.3 pTM=0.453 ipTM=0.131 tol=1.56
2024-07-13 21:27:50,787 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=62.8 pTM=0.461 ipTM=0.129 tol=0.704
2024-07-13 21:27:55,257 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=63 pTM=0.469 ipTM=0.139 tol=1.25
2024-07-13 21:27:59,726 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=62.5 pTM=0.467 ipTM=0.131 tol=1.26
2024-07-13 21:28:04,196 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=62.6 pTM=0.468 ipTM=0.134 tol=0.53
2024-07-13 21:28:08,665 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=63.4 pTM=0.483 ipTM=0.137 tol=1.4
2024-07-13 21:28:13,136 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=63.2 pTM=0.476 ipTM=0.134 tol=0.904
2024-07-13 21:28:17,604 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=63.2 pTM=0.483 ipTM=0.129 tol=1.01
2024-07-13 21:28:22,075 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=62.2 pTM=0.469 ipTM=0.129 tol=1.59
2024-07-13 21:28:26,542 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=62.2 pTM=0.46 ipTM=0.131 tol=0.609
2024-07-13 21:28:31,012 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=62.1 pTM=0.471 ipTM=0.145 tol=1.19
2024-07-13 21:28:35,479 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=61.8 pTM=0.466 ipTM=0.13 tol=2.08
2024-07-13 21:28:39,949 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=61 pTM=0.464 ipTM=0.134 tol=1.09
2024-07-13 21:28:44,417 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=62.5 pTM=0.477 ipTM=0.132 tol=0.768
2024-07-13 21:28:48,885 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=62.2 pTM=0.477 ipTM=0.135 tol=0.862
2024-07-13 21:28:53,350 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=62.4 pTM=0.474 ipTM=0.127 tol=0.773
2024-07-13 21:28:57,820 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=62.7 pTM=0.477 ipTM=0.142 tol=1.67
2024-07-13 21:29:02,288 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=63.1 pTM=0.481 ipTM=0.13 tol=1.34
2024-07-13 21:29:06,757 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=62.3 pTM=0.481 ipTM=0.142 tol=1.07
2024-07-13 21:29:11,223 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=61 pTM=0.465 ipTM=0.13 tol=1.29
2024-07-13 21:29:15,694 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=61.1 pTM=0.471 ipTM=0.136 tol=0.98
2024-07-13 21:29:20,161 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=61.2 pTM=0.46 ipTM=0.118 tol=1.12
2024-07-13 21:29:24,632 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=60.7 pTM=0.455 ipTM=0.128 tol=1.06
2024-07-13 21:29:29,102 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=62.2 pTM=0.472 ipTM=0.118 tol=1.81
2024-07-13 21:29:33,573 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=60.5 pTM=0.465 ipTM=0.133 tol=1.61
2024-07-13 21:29:38,042 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=61 pTM=0.461 ipTM=0.128 tol=0.693
2024-07-13 21:29:42,512 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=61.2 pTM=0.466 ipTM=0.137 tol=1.67
2024-07-13 21:29:46,982 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=61.8 pTM=0.462 ipTM=0.129 tol=1.84
2024-07-13 21:29:51,453 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=60.5 pTM=0.458 ipTM=0.133 tol=1.3
2024-07-13 21:29:51,454 alphafold2_multimer_v3_model_1_seed_000 took 342.9s (30 recycles)
2024-07-13 21:29:56,047 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=60.3 pTM=0.401 ipTM=0.149
2024-07-13 21:30:00,520 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=61.2 pTM=0.42 ipTM=0.147 tol=1.99
2024-07-13 21:30:04,991 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=61.7 pTM=0.429 ipTM=0.143 tol=1.14
2024-07-13 21:30:09,461 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=63 pTM=0.441 ipTM=0.149 tol=0.413
2024-07-13 21:30:09,461 alphafold2_multimer_v3_model_2_seed_000 took 17.9s (3 recycles)
2024-07-13 21:30:14,055 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=62.8 pTM=0.433 ipTM=0.15
2024-07-13 21:30:18,532 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=61.5 pTM=0.459 ipTM=0.144 tol=7.27
2024-07-13 21:30:23,006 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=64.8 pTM=0.477 ipTM=0.153 tol=2.9
2024-07-13 21:30:27,479 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=70.6 pTM=0.549 ipTM=0.188 tol=3.16
2024-07-13 21:30:31,951 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=70.1 pTM=0.543 ipTM=0.185 tol=1.94
2024-07-13 21:30:36,424 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=71.3 pTM=0.561 ipTM=0.21 tol=0.983
2024-07-13 21:30:40,893 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=70.3 pTM=0.548 ipTM=0.19 tol=0.261
2024-07-13 21:30:40,893 alphafold2_multimer_v3_model_3_seed_000 took 31.3s (6 recycles)
2024-07-13 21:30:45,488 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=66.6 pTM=0.487 ipTM=0.164
2024-07-13 21:30:49,963 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=66.6 pTM=0.515 ipTM=0.169 tol=6.33
2024-07-13 21:30:54,440 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=68.4 pTM=0.537 ipTM=0.167 tol=2.5
2024-07-13 21:30:58,912 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=69 pTM=0.55 ipTM=0.194 tol=1.33
2024-07-13 21:31:03,388 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=68 pTM=0.565 ipTM=0.208 tol=1.07
2024-07-13 21:31:07,859 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=67.9 pTM=0.55 ipTM=0.197 tol=1.38
2024-07-13 21:31:12,334 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=69.3 pTM=0.56 ipTM=0.201 tol=5.12
2024-07-13 21:31:16,806 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=70.8 pTM=0.56 ipTM=0.187 tol=2.37
2024-07-13 21:31:21,283 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=69.2 pTM=0.554 ipTM=0.162 tol=1.92
2024-07-13 21:31:25,756 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=69.4 pTM=0.546 ipTM=0.165 tol=1.26
2024-07-13 21:31:30,232 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=69.9 pTM=0.554 ipTM=0.159 tol=1.15
2024-07-13 21:31:34,703 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=69.8 pTM=0.542 ipTM=0.163 tol=0.992
2024-07-13 21:31:39,180 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=68.5 pTM=0.54 ipTM=0.149 tol=2.08
2024-07-13 21:31:43,651 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=69.2 pTM=0.548 ipTM=0.165 tol=1.61
2024-07-13 21:31:48,126 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=68.7 pTM=0.543 ipTM=0.157 tol=0.635
2024-07-13 21:31:52,599 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=70.2 pTM=0.553 ipTM=0.161 tol=1.28
2024-07-13 21:31:57,074 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=68.8 pTM=0.543 ipTM=0.148 tol=2.3
2024-07-13 21:32:01,547 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=69.7 pTM=0.549 ipTM=0.165 tol=1.8
2024-07-13 21:32:06,023 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=68 pTM=0.533 ipTM=0.153 tol=0.977
2024-07-13 21:32:10,496 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=69.1 pTM=0.539 ipTM=0.151 tol=0.498
2024-07-13 21:32:10,496 alphafold2_multimer_v3_model_4_seed_000 took 89.5s (19 recycles)
2024-07-13 21:32:15,093 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=67.1 pTM=0.486 ipTM=0.208
2024-07-13 21:32:19,570 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=66.5 pTM=0.499 ipTM=0.148 tol=2.97
2024-07-13 21:32:24,045 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=67.2 pTM=0.515 ipTM=0.154 tol=1.66
2024-07-13 21:32:28,519 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=66.2 pTM=0.506 ipTM=0.129 tol=2
2024-07-13 21:32:32,995 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=67.1 pTM=0.515 ipTM=0.147 tol=5.65
2024-07-13 21:32:37,469 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=68.6 pTM=0.522 ipTM=0.144 tol=1.94
2024-07-13 21:32:41,947 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=69.6 pTM=0.532 ipTM=0.16 tol=0.884
2024-07-13 21:32:46,420 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=69.7 pTM=0.542 ipTM=0.166 tol=3.1
2024-07-13 21:32:50,896 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=70.8 pTM=0.541 ipTM=0.159 tol=1.54
2024-07-13 21:32:55,368 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=72.2 pTM=0.567 ipTM=0.219 tol=1.13
2024-07-13 21:32:59,846 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=72.6 pTM=0.562 ipTM=0.185 tol=0.662
2024-07-13 21:33:04,318 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=71.7 pTM=0.558 ipTM=0.201 tol=0.739
2024-07-13 21:33:08,794 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=71.1 pTM=0.553 ipTM=0.187 tol=1.1
2024-07-13 21:33:13,265 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=70.6 pTM=0.55 ipTM=0.195 tol=0.902
2024-07-13 21:33:17,741 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=71.4 pTM=0.551 ipTM=0.174 tol=0.978
2024-07-13 21:33:22,215 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=71.1 pTM=0.551 ipTM=0.183 tol=0.873
2024-07-13 21:33:26,691 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=71.8 pTM=0.552 ipTM=0.176 tol=0.734
2024-07-13 21:33:31,163 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=71.4 pTM=0.554 ipTM=0.183 tol=0.634
2024-07-13 21:33:35,640 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=70.3 pTM=0.539 ipTM=0.162 tol=0.867
2024-07-13 21:33:40,114 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=70.6 pTM=0.542 ipTM=0.165 tol=1.03
2024-07-13 21:33:44,590 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=69.8 pTM=0.534 ipTM=0.157 tol=0.978
2024-07-13 21:33:49,061 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=70.6 pTM=0.549 ipTM=0.205 tol=1.13
2024-07-13 21:33:53,537 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=70.9 pTM=0.548 ipTM=0.184 tol=0.607
2024-07-13 21:33:58,010 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=70.6 pTM=0.545 ipTM=0.182 tol=0.47
2024-07-13 21:33:58,010 alphafold2_multimer_v3_model_5_seed_000 took 107.4s (23 recycles)
2024-07-13 21:33:58,123 reranking models by 'multimer' metric
2024-07-13 21:34:15,925 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 21:34:53,313 Relaxation took 55.2s
2024-07-13 21:34:53,313 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=70.3 pTM=0.548 ipTM=0.19
2024-07-13 21:35:05,368 Relaxation took 12.1s
2024-07-13 21:35:05,369 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=70.6 pTM=0.545 ipTM=0.182
2024-07-13 21:35:35,951 Relaxation took 30.6s
2024-07-13 21:35:35,951 rank_003_alphafold2_multimer_v3_model_4_seed_000 pLDDT=69.1 pTM=0.539 ipTM=0.151
2024-07-13 21:35:49,474 Relaxation took 13.5s
2024-07-13 21:35:49,474 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=63 pTM=0.441 ipTM=0.149
2024-07-13 21:35:58,301 Relaxation took 8.8s
2024-07-13 21:35:58,302 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=60.5 pTM=0.458 ipTM=0.133
2024-07-13 21:35:59,437 Done