2024-07-13 21:44:41,296 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 21:44:41,652 Running on GPU
2024-07-13 21:44:55,496 Found 6 citations for tools or databases
2024-07-13 21:44:55,496 Query 1/1: UBP19_TGR3L (length 1610)
2024-07-13 21:44:55,972 Sleeping for 6s. Reason: PENDING
2024-07-13 21:45:02,400 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:45:12,807 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:45:21,212 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:45:27,639 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:45:33,052 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:45:43,471 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:45:48,894 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:45:56,304 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:46:02,724 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:46:12,150 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:46:21,561 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:46:30,991 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:46:37,410 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:46:47,857 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:46:54,289 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:47:01,706 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:47:12,125 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:47:18,540 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:47:24,960 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:47:32,383 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:47:37,792 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:47:45,224 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:47:51,636 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:47:57,058 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:48:11,740 Sleeping for 6s. Reason: PENDING
2024-07-13 21:48:18,156 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:48:24,592 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:48:33,018 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:48:40,437 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:48:48,878 Sleeping for 10s. Reason: RUNNING
2024-07-13 21:48:59,316 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:49:07,721 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:49:15,123 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:49:24,551 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:49:29,990 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:49:39,437 Sleeping for 5s. Reason: RUNNING
2024-07-13 21:49:44,850 Sleeping for 6s. Reason: RUNNING
2024-07-13 21:49:51,267 Sleeping for 8s. Reason: RUNNING
2024-07-13 21:49:59,695 Sleeping for 7s. Reason: RUNNING
2024-07-13 21:50:07,126 Sleeping for 9s. Reason: RUNNING
2024-07-13 21:50:24,364 Setting max_seq=508, max_extra_seq=2048
2024-07-13 21:54:49,788 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=56.7 pTM=0.403 ipTM=0.199
2024-07-13 21:56:08,998 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=57.8 pTM=0.385 ipTM=0.188 tol=13.7
2024-07-13 21:57:28,256 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=57.8 pTM=0.386 ipTM=0.203 tol=17.1
2024-07-13 21:58:47,515 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=58.2 pTM=0.385 ipTM=0.199 tol=8.88
2024-07-13 22:00:06,751 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=58.6 pTM=0.397 ipTM=0.257 tol=9.51
2024-07-13 22:01:25,926 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=59.1 pTM=0.407 ipTM=0.305 tol=8.12
2024-07-13 22:02:45,127 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=59 pTM=0.409 ipTM=0.319 tol=4.3
2024-07-13 22:04:04,362 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=59.3 pTM=0.416 ipTM=0.338 tol=4.36
2024-07-13 22:05:23,556 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=59 pTM=0.414 ipTM=0.337 tol=4.43
2024-07-13 22:06:42,789 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=59.2 pTM=0.414 ipTM=0.334 tol=5.11
2024-07-13 22:08:02,003 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=59.3 pTM=0.42 ipTM=0.369 tol=4.22
2024-07-13 22:09:21,214 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=59.2 pTM=0.421 ipTM=0.367 tol=4.41
2024-07-13 22:10:40,413 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=59.4 pTM=0.423 ipTM=0.369 tol=4.47
2024-07-13 22:11:59,622 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=59.2 pTM=0.419 ipTM=0.343 tol=1.92
2024-07-13 22:13:18,852 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=59.4 pTM=0.419 ipTM=0.359 tol=1.82
2024-07-13 22:14:38,077 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=59.4 pTM=0.42 ipTM=0.346 tol=1.55
2024-07-13 22:15:57,265 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=59.6 pTM=0.426 ipTM=0.386 tol=3.06
2024-07-13 22:17:16,467 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=59.6 pTM=0.427 ipTM=0.37 tol=1.83
2024-07-13 22:18:35,629 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=59.5 pTM=0.43 ipTM=0.395 tol=2.49
2024-07-13 22:19:54,820 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=59.5 pTM=0.428 ipTM=0.384 tol=2.1
2024-07-13 22:21:13,964 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=59.4 pTM=0.425 ipTM=0.379 tol=1.52
2024-07-13 22:22:33,115 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=59.5 pTM=0.423 ipTM=0.358 tol=2.36
2024-07-13 22:23:52,279 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=59.4 pTM=0.419 ipTM=0.349 tol=2.77
2024-07-13 22:25:11,466 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=59.2 pTM=0.413 ipTM=0.315 tol=2.44
2024-07-13 22:26:30,634 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=59.3 pTM=0.416 ipTM=0.345 tol=3
2024-07-13 22:27:49,803 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=59.3 pTM=0.417 ipTM=0.341 tol=5.36
2024-07-13 22:29:08,978 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=59.6 pTM=0.423 ipTM=0.374 tol=4.62
2024-07-13 22:30:28,167 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=59.5 pTM=0.42 ipTM=0.35 tol=2.47
2024-07-13 22:31:47,359 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=59.5 pTM=0.42 ipTM=0.361 tol=2.26
2024-07-13 22:33:06,556 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=59.6 pTM=0.421 ipTM=0.356 tol=2.3
2024-07-13 22:34:25,723 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=59.6 pTM=0.423 ipTM=0.371 tol=4.62
2024-07-13 22:34:25,724 alphafold2_multimer_v3_model_1_seed_000 took 2607.6s (30 recycles)
2024-07-13 22:35:46,583 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=56.5 pTM=0.455 ipTM=0.268
2024-07-13 22:37:06,003 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=57.3 pTM=0.433 ipTM=0.208 tol=13.3
2024-07-13 22:38:25,411 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=59.1 pTM=0.447 ipTM=0.255 tol=11.7
2024-07-13 22:39:44,825 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=59.6 pTM=0.451 ipTM=0.265 tol=6.93
2024-07-13 22:41:04,217 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=60 pTM=0.454 ipTM=0.28 tol=5.01
2024-07-13 22:42:23,634 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=59.9 pTM=0.443 ipTM=0.24 tol=4.42
2024-07-13 22:43:43,064 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=59.8 pTM=0.444 ipTM=0.245 tol=1.94
2024-07-13 22:45:02,455 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=59.8 pTM=0.446 ipTM=0.243 tol=3.02
2024-07-13 22:46:21,857 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=59.8 pTM=0.444 ipTM=0.239 tol=1.81
2024-07-13 22:47:41,229 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=59.8 pTM=0.444 ipTM=0.237 tol=4.88
2024-07-13 22:49:00,621 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=60.1 pTM=0.446 ipTM=0.244 tol=3.28
2024-07-13 22:50:19,976 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=59.2 pTM=0.444 ipTM=0.23 tol=14.6
2024-07-13 22:51:39,346 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=59.8 pTM=0.441 ipTM=0.228 tol=12.3
2024-07-13 22:52:58,740 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=60.1 pTM=0.445 ipTM=0.231 tol=5.06
2024-07-13 22:54:18,110 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=60.1 pTM=0.442 ipTM=0.23 tol=2.12
2024-07-13 22:55:37,506 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=60.1 pTM=0.443 ipTM=0.226 tol=2.2
2024-07-13 22:56:56,891 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=60.1 pTM=0.444 ipTM=0.231 tol=2.03
2024-07-13 22:58:16,272 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=60.2 pTM=0.445 ipTM=0.235 tol=5.86
2024-07-13 22:59:35,608 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=60.2 pTM=0.448 ipTM=0.255 tol=5.9
2024-07-13 23:00:54,987 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=60.2 pTM=0.446 ipTM=0.243 tol=4.79
2024-07-13 23:02:14,364 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=60.1 pTM=0.447 ipTM=0.252 tol=1.76
2024-07-13 23:03:33,740 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=60.3 pTM=0.447 ipTM=0.25 tol=2.33
2024-07-13 23:04:53,110 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=60.3 pTM=0.449 ipTM=0.266 tol=3.04
2024-07-13 23:06:12,480 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=60.3 pTM=0.447 ipTM=0.243 tol=4.51
2024-07-13 23:07:31,849 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=60.2 pTM=0.445 ipTM=0.239 tol=5.33
2024-07-13 23:08:51,235 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=60.2 pTM=0.447 ipTM=0.245 tol=4.51
2024-07-13 23:10:10,579 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=60.4 pTM=0.454 ipTM=0.281 tol=5.07
2024-07-13 23:11:29,952 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=60.3 pTM=0.45 ipTM=0.253 tol=5.29
2024-07-13 23:12:49,354 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=60.1 pTM=0.446 ipTM=0.24 tol=2.24
2024-07-13 23:14:08,747 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=60.2 pTM=0.446 ipTM=0.25 tol=4.61
2024-07-13 23:15:28,130 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=60.1 pTM=0.45 ipTM=0.26 tol=4.35
2024-07-13 23:15:28,131 alphafold2_multimer_v3_model_2_seed_000 took 2460.9s (30 recycles)
2024-07-13 23:16:49,221 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=55.8 pTM=0.429 ipTM=0.228
2024-07-13 23:18:08,647 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=58.1 pTM=0.445 ipTM=0.313 tol=14.8
2024-07-13 23:19:28,069 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=59.8 pTM=0.485 ipTM=0.533 tol=9.57
2024-07-13 23:20:47,446 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=60.2 pTM=0.494 ipTM=0.562 tol=5.84
2024-07-13 23:22:06,848 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=60.5 pTM=0.501 ipTM=0.582 tol=7.45
2024-07-13 23:23:26,205 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=60.2 pTM=0.496 ipTM=0.581 tol=6.14
2024-07-13 23:24:45,583 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=60.6 pTM=0.503 ipTM=0.589 tol=2.4
2024-07-13 23:26:04,942 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=60.7 pTM=0.505 ipTM=0.592 tol=1.92
2024-07-13 23:27:24,347 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=60.6 pTM=0.505 ipTM=0.592 tol=1.69
2024-07-13 23:28:43,707 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=60.8 pTM=0.508 ipTM=0.595 tol=1.81
2024-07-13 23:30:03,045 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=60.5 pTM=0.502 ipTM=0.588 tol=2.11
2024-07-13 23:31:22,407 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=60.5 pTM=0.505 ipTM=0.597 tol=6.29
2024-07-13 23:32:41,760 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=60.9 pTM=0.513 ipTM=0.628 tol=2.1
2024-07-13 23:34:01,102 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=60.9 pTM=0.512 ipTM=0.622 tol=1.68
2024-07-13 23:35:20,465 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=60.7 pTM=0.509 ipTM=0.621 tol=3.19
2024-07-13 23:36:39,836 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=61 pTM=0.512 ipTM=0.624 tol=3.11
2024-07-13 23:37:59,182 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=61 pTM=0.514 ipTM=0.625 tol=3.14
2024-07-13 23:39:18,519 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=61.2 pTM=0.521 ipTM=0.63 tol=2.04
2024-07-13 23:40:37,877 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=61 pTM=0.518 ipTM=0.627 tol=2.37
2024-07-13 23:41:57,214 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=60.8 pTM=0.516 ipTM=0.623 tol=1.87
2024-07-13 23:43:16,583 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=60.8 pTM=0.519 ipTM=0.627 tol=1.77
2024-07-13 23:44:35,955 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=60.9 pTM=0.519 ipTM=0.626 tol=1.96
2024-07-13 23:45:55,303 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=60.9 pTM=0.519 ipTM=0.627 tol=2
2024-07-13 23:47:14,687 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=61 pTM=0.522 ipTM=0.628 tol=1.7
2024-07-13 23:48:34,064 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=61.1 pTM=0.524 ipTM=0.628 tol=1.34
2024-07-13 23:49:53,437 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=60.7 pTM=0.518 ipTM=0.625 tol=1.71
2024-07-13 23:51:12,810 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=61 pTM=0.52 ipTM=0.629 tol=2.26
2024-07-13 23:52:32,175 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=60.8 pTM=0.518 ipTM=0.626 tol=2.11
2024-07-13 23:53:51,550 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=60.8 pTM=0.517 ipTM=0.625 tol=1.41
2024-07-13 23:55:10,897 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=60.8 pTM=0.518 ipTM=0.625 tol=1.34
2024-07-13 23:56:30,285 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=60.9 pTM=0.521 ipTM=0.627 tol=1.6
2024-07-13 23:56:30,287 alphafold2_multimer_v3_model_3_seed_000 took 2460.6s (30 recycles)
2024-07-13 23:57:51,347 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=54.8 pTM=0.425 ipTM=0.186
2024-07-13 23:59:10,802 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=56.4 pTM=0.49 ipTM=0.527 tol=20.5
2024-07-14 00:00:30,281 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=58.2 pTM=0.481 ipTM=0.419 tol=17.6
2024-07-14 00:01:49,750 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=57.8 pTM=0.435 ipTM=0.209 tol=6.59
2024-07-14 00:03:09,243 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=56.9 pTM=0.452 ipTM=0.313 tol=16.7
2024-07-14 00:04:28,777 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=57.4 pTM=0.427 ipTM=0.206 tol=15.7
2024-07-14 00:05:48,274 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=56.9 pTM=0.455 ipTM=0.362 tol=14.9
2024-07-14 00:07:07,799 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=57.3 pTM=0.433 ipTM=0.228 tol=14.8
2024-07-14 00:08:27,323 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=56.5 pTM=0.457 ipTM=0.349 tol=14.5
2024-07-14 00:09:46,837 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=57.3 pTM=0.433 ipTM=0.222 tol=15.4
2024-07-14 00:11:06,338 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=57.6 pTM=0.428 ipTM=0.217 tol=4.83
2024-07-14 00:12:25,786 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=57.8 pTM=0.441 ipTM=0.272 tol=7.95
2024-07-14 00:13:45,264 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=57.8 pTM=0.438 ipTM=0.25 tol=7.41
2024-07-14 00:15:04,686 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=58.6 pTM=0.463 ipTM=0.384 tol=5.41
2024-07-14 00:16:24,130 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=58.3 pTM=0.443 ipTM=0.292 tol=3.68
2024-07-14 00:17:43,577 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=58 pTM=0.443 ipTM=0.286 tol=2.37
2024-07-14 00:19:03,013 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=57.9 pTM=0.434 ipTM=0.228 tol=3.09
2024-07-14 00:20:22,424 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=58.2 pTM=0.449 ipTM=0.297 tol=3.41
2024-07-14 00:21:41,820 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=58.1 pTM=0.444 ipTM=0.262 tol=4.27
2024-07-14 00:23:01,210 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=58.5 pTM=0.464 ipTM=0.359 tol=4.32
2024-07-14 00:24:20,658 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=58 pTM=0.432 ipTM=0.216 tol=4.31
2024-07-14 00:25:40,086 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=58.3 pTM=0.454 ipTM=0.339 tol=4.86
2024-07-14 00:26:59,500 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=58.1 pTM=0.43 ipTM=0.216 tol=3.42
2024-07-14 00:28:18,967 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=57.7 pTM=0.436 ipTM=0.24 tol=4.17
2024-07-14 00:29:38,363 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=58.8 pTM=0.466 ipTM=0.386 tol=3.34
2024-07-14 00:30:57,714 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=59.6 pTM=0.482 ipTM=0.453 tol=3.63
2024-07-14 00:32:17,047 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=59.9 pTM=0.487 ipTM=0.479 tol=3.59
2024-07-14 00:33:36,383 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=60.1 pTM=0.493 ipTM=0.498 tol=4.03
2024-07-14 00:34:57,683 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=60 pTM=0.494 ipTM=0.507 tol=2.28
2024-07-14 00:36:17,023 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=60.2 pTM=0.499 ipTM=0.524 tol=2.14
2024-07-14 00:37:36,384 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=60.5 pTM=0.505 ipTM=0.546 tol=2.11
2024-07-14 00:37:36,386 alphafold2_multimer_v3_model_4_seed_000 took 2464.6s (30 recycles)
2024-07-14 00:38:57,385 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=54.2 pTM=0.449 ipTM=0.281
2024-07-14 00:40:16,812 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=55.3 pTM=0.452 ipTM=0.373 tol=20.1
2024-07-14 00:41:36,335 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=56.6 pTM=0.42 ipTM=0.195 tol=17.5
2024-07-14 00:42:55,747 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=57.4 pTM=0.455 ipTM=0.379 tol=9.11
2024-07-14 00:44:15,107 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=57.5 pTM=0.448 ipTM=0.36 tol=6.18
2024-07-14 00:45:34,469 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=57.4 pTM=0.434 ipTM=0.298 tol=9.09
2024-07-14 00:46:53,886 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=57.1 pTM=0.423 ipTM=0.238 tol=6.89
2024-07-14 00:48:13,313 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=57.3 pTM=0.423 ipTM=0.222 tol=4.73
2024-07-14 00:49:32,834 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=57.1 pTM=0.418 ipTM=0.194 tol=3.98
2024-07-14 00:50:52,204 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=57.3 pTM=0.432 ipTM=0.26 tol=4.35
2024-07-14 00:52:11,572 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=57.4 pTM=0.438 ipTM=0.304 tol=3.67
2024-07-14 00:53:30,950 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=57.3 pTM=0.426 ipTM=0.231 tol=2.87
2024-07-14 00:54:50,383 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=57.2 pTM=0.425 ipTM=0.219 tol=4.1
2024-07-14 00:56:09,766 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=57.6 pTM=0.436 ipTM=0.267 tol=3.12
2024-07-14 00:57:29,159 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=57.4 pTM=0.432 ipTM=0.261 tol=7.34
2024-07-14 00:58:48,621 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=57.5 pTM=0.428 ipTM=0.229 tol=6.61
2024-07-14 01:00:08,032 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=57.5 pTM=0.424 ipTM=0.21 tol=5.07
2024-07-14 01:01:27,435 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=57.7 pTM=0.429 ipTM=0.231 tol=5.23
2024-07-14 01:02:46,848 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=57.5 pTM=0.425 ipTM=0.215 tol=4.15
2024-07-14 01:04:06,273 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=57.4 pTM=0.425 ipTM=0.217 tol=4.86
2024-07-14 01:05:25,711 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=57.5 pTM=0.424 ipTM=0.217 tol=5.57
2024-07-14 01:06:45,111 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=57.8 pTM=0.434 ipTM=0.259 tol=3.78
2024-07-14 01:08:04,495 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=57.6 pTM=0.429 ipTM=0.247 tol=5.08
2024-07-14 01:09:23,898 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=57.6 pTM=0.427 ipTM=0.224 tol=5.62
2024-07-14 01:10:43,321 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=57.6 pTM=0.423 ipTM=0.21 tol=2.95
2024-07-14 01:12:02,685 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=57.8 pTM=0.44 ipTM=0.296 tol=2.85
2024-07-14 01:13:22,036 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=58 pTM=0.45 ipTM=0.365 tol=4.02
2024-07-14 01:14:41,397 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=57.8 pTM=0.437 ipTM=0.29 tol=3.65
2024-07-14 01:16:00,781 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=57.6 pTM=0.424 ipTM=0.222 tol=8.77
2024-07-14 01:17:20,235 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=57.7 pTM=0.426 ipTM=0.231 tol=5.3
2024-07-14 01:18:39,608 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=57.6 pTM=0.428 ipTM=0.229 tol=6.64
2024-07-14 01:18:39,610 alphafold2_multimer_v3_model_5_seed_000 took 2461.7s (30 recycles)
2024-07-14 01:18:41,137 reranking models by 'multimer' metric
2024-07-14 01:18:42,864 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-14 01:22:07,936 Relaxation took 206.8s
2024-07-14 01:22:07,936 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=60.9 pTM=0.521 ipTM=0.627
2024-07-14 01:26:31,012 Relaxation took 263.1s
2024-07-14 01:26:31,012 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=60.5 pTM=0.505 ipTM=0.546
2024-07-14 01:29:13,789 Relaxation took 162.8s
2024-07-14 01:29:13,790 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=59.6 pTM=0.423 ipTM=0.371
2024-07-14 01:31:37,516 Relaxation took 143.7s
2024-07-14 01:31:37,516 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=60.1 pTM=0.45 ipTM=0.26
2024-07-14 01:34:24,892 Relaxation took 167.4s
2024-07-14 01:34:24,893 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=57.6 pTM=0.428 ipTM=0.229
2024-07-14 01:34:37,885 Done