2024-07-13 23:32:46,199 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 23:32:46,525 Running on GPU
2024-07-13 23:32:56,994 Found 6 citations for tools or databases
2024-07-13 23:32:56,994 Query 1/1: UDB28_KCNN4 (length 956)
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2024-07-13 23:39:52,732 Setting max_seq=508, max_extra_seq=2048
2024-07-13 23:43:12,740 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=79.8 pTM=0.549 ipTM=0.16
2024-07-13 23:43:33,047 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=81.3 pTM=0.551 ipTM=0.156 tol=6
2024-07-13 23:43:53,398 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=82.2 pTM=0.553 ipTM=0.163 tol=4.2
2024-07-13 23:44:13,784 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=81.9 pTM=0.545 ipTM=0.149 tol=1.36
2024-07-13 23:44:34,177 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=81.7 pTM=0.543 ipTM=0.155 tol=1.38
2024-07-13 23:44:54,581 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=81.4 pTM=0.542 ipTM=0.149 tol=1.47
2024-07-13 23:45:15,002 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=81.6 pTM=0.544 ipTM=0.153 tol=1.19
2024-07-13 23:45:35,436 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=82 pTM=0.545 ipTM=0.152 tol=1.18
2024-07-13 23:45:55,864 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=81.9 pTM=0.542 ipTM=0.15 tol=1.12
2024-07-13 23:46:16,290 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=81.8 pTM=0.543 ipTM=0.154 tol=0.914
2024-07-13 23:46:36,744 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=81.9 pTM=0.545 ipTM=0.153 tol=0.708
2024-07-13 23:46:57,197 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=81.2 pTM=0.542 ipTM=0.149 tol=1.18
2024-07-13 23:47:17,659 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=81.7 pTM=0.545 ipTM=0.149 tol=0.899
2024-07-13 23:47:38,122 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=81.6 pTM=0.544 ipTM=0.149 tol=0.608
2024-07-13 23:47:58,578 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=81.8 pTM=0.547 ipTM=0.152 tol=0.65
2024-07-13 23:48:19,028 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=81.8 pTM=0.543 ipTM=0.149 tol=0.602
2024-07-13 23:48:39,472 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=81.6 pTM=0.542 ipTM=0.148 tol=1.12
2024-07-13 23:48:59,925 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=81.6 pTM=0.546 ipTM=0.152 tol=1.09
2024-07-13 23:49:20,371 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=81.5 pTM=0.543 ipTM=0.149 tol=0.704
2024-07-13 23:49:40,817 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=81.4 pTM=0.545 ipTM=0.15 tol=1.55
2024-07-13 23:50:01,270 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=80.9 pTM=0.547 ipTM=0.15 tol=7.75
2024-07-13 23:50:21,722 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=81.6 pTM=0.545 ipTM=0.146 tol=3.99
2024-07-13 23:50:42,180 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=81.3 pTM=0.542 ipTM=0.143 tol=1.41
2024-07-13 23:51:02,627 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=81.2 pTM=0.542 ipTM=0.151 tol=1.03
2024-07-13 23:51:23,074 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=81.4 pTM=0.544 ipTM=0.146 tol=2.24
2024-07-13 23:51:43,519 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=81.2 pTM=0.541 ipTM=0.143 tol=1.42
2024-07-13 23:52:03,979 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=81.3 pTM=0.542 ipTM=0.144 tol=1.33
2024-07-13 23:52:24,434 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=81.1 pTM=0.543 ipTM=0.146 tol=1.71
2024-07-13 23:52:44,888 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=81.1 pTM=0.543 ipTM=0.148 tol=1.62
2024-07-13 23:53:05,351 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=81.4 pTM=0.546 ipTM=0.149 tol=1.12
2024-07-13 23:53:25,830 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=81.3 pTM=0.544 ipTM=0.147 tol=1.9
2024-07-13 23:53:25,831 alphafold2_multimer_v3_model_1_seed_000 took 758.0s (30 recycles)
2024-07-13 23:53:46,878 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=78 pTM=0.545 ipTM=0.162
2024-07-13 23:54:07,328 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=80.4 pTM=0.56 ipTM=0.192 tol=8.11
2024-07-13 23:54:27,771 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=81.3 pTM=0.563 ipTM=0.202 tol=2.46
2024-07-13 23:54:48,182 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=81.5 pTM=0.571 ipTM=0.226 tol=1.18
2024-07-13 23:55:08,587 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=81.7 pTM=0.573 ipTM=0.232 tol=1.12
2024-07-13 23:55:28,995 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=81.7 pTM=0.576 ipTM=0.24 tol=0.371
2024-07-13 23:55:28,996 alphafold2_multimer_v3_model_2_seed_000 took 122.6s (5 recycles)
2024-07-13 23:55:50,030 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=77.8 pTM=0.55 ipTM=0.163
2024-07-13 23:56:10,464 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=78.5 pTM=0.548 ipTM=0.156 tol=3.27
2024-07-13 23:56:30,907 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=78.6 pTM=0.548 ipTM=0.155 tol=0.983
2024-07-13 23:56:51,335 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=78.8 pTM=0.547 ipTM=0.157 tol=1.23
2024-07-13 23:57:11,764 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=78.9 pTM=0.547 ipTM=0.159 tol=1.32
2024-07-13 23:57:32,186 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=79 pTM=0.546 ipTM=0.16 tol=0.671
2024-07-13 23:57:52,608 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=79.1 pTM=0.549 ipTM=0.162 tol=0.434
2024-07-13 23:57:52,609 alphafold2_multimer_v3_model_3_seed_000 took 143.0s (6 recycles)
2024-07-13 23:58:13,636 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=76.4 pTM=0.548 ipTM=0.175
2024-07-13 23:58:34,132 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=77.9 pTM=0.549 ipTM=0.16 tol=10.5
2024-07-13 23:58:54,623 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=78.8 pTM=0.548 ipTM=0.157 tol=3.53
2024-07-13 23:59:15,111 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=78.5 pTM=0.549 ipTM=0.16 tol=2.42
2024-07-13 23:59:35,594 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=78.8 pTM=0.55 ipTM=0.16 tol=2.83
2024-07-13 23:59:56,052 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=78.8 pTM=0.547 ipTM=0.162 tol=3.46
2024-07-14 00:00:16,520 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=79.2 pTM=0.55 ipTM=0.163 tol=1.59
2024-07-14 00:00:36,988 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=79.4 pTM=0.55 ipTM=0.161 tol=2.32
2024-07-14 00:00:57,455 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=79.4 pTM=0.546 ipTM=0.159 tol=1.67
2024-07-14 00:01:17,919 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=79.6 pTM=0.55 ipTM=0.159 tol=1.35
2024-07-14 00:01:38,384 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=79.4 pTM=0.549 ipTM=0.158 tol=1.58
2024-07-14 00:01:58,854 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=79.2 pTM=0.55 ipTM=0.158 tol=1.05
2024-07-14 00:02:19,324 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=79.4 pTM=0.551 ipTM=0.16 tol=0.921
2024-07-14 00:02:39,788 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=79.2 pTM=0.551 ipTM=0.161 tol=0.915
2024-07-14 00:03:00,249 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=79.4 pTM=0.552 ipTM=0.162 tol=0.621
2024-07-14 00:03:20,717 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=79.4 pTM=0.55 ipTM=0.16 tol=0.8
2024-07-14 00:03:41,184 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=79.2 pTM=0.55 ipTM=0.159 tol=0.891
2024-07-14 00:04:01,652 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=79.4 pTM=0.551 ipTM=0.16 tol=0.736
2024-07-14 00:04:22,118 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=79.1 pTM=0.548 ipTM=0.156 tol=0.744
2024-07-14 00:04:42,592 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=79.1 pTM=0.55 ipTM=0.157 tol=0.663
2024-07-14 00:05:03,073 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=79.2 pTM=0.549 ipTM=0.156 tol=0.911
2024-07-14 00:05:23,539 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=79.3 pTM=0.548 ipTM=0.155 tol=1.88
2024-07-14 00:05:44,013 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=79.2 pTM=0.547 ipTM=0.154 tol=0.813
2024-07-14 00:06:04,475 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=78.9 pTM=0.548 ipTM=0.157 tol=0.6
2024-07-14 00:06:24,941 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=78.8 pTM=0.548 ipTM=0.158 tol=0.583
2024-07-14 00:06:45,417 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=79 pTM=0.546 ipTM=0.154 tol=3.38
2024-07-14 00:07:05,898 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=79.1 pTM=0.547 ipTM=0.154 tol=2.06
2024-07-14 00:07:26,383 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=78.9 pTM=0.548 ipTM=0.154 tol=0.935
2024-07-14 00:07:46,870 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=78.8 pTM=0.548 ipTM=0.154 tol=1.2
2024-07-14 00:08:07,368 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=78.9 pTM=0.549 ipTM=0.153 tol=0.964
2024-07-14 00:08:27,872 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=78.6 pTM=0.549 ipTM=0.156 tol=1.75
2024-07-14 00:08:27,873 alphafold2_multimer_v3_model_4_seed_000 took 634.7s (30 recycles)
2024-07-14 00:08:48,909 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=75.4 pTM=0.557 ipTM=0.185
2024-07-14 00:09:09,378 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=76.4 pTM=0.553 ipTM=0.169 tol=4.36
2024-07-14 00:09:29,841 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.6 pTM=0.553 ipTM=0.178 tol=2.75
2024-07-14 00:09:50,306 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.7 pTM=0.548 ipTM=0.168 tol=1.12
2024-07-14 00:10:10,776 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.9 pTM=0.549 ipTM=0.169 tol=0.753
2024-07-14 00:10:31,233 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.8 pTM=0.546 ipTM=0.169 tol=0.726
2024-07-14 00:10:51,698 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=78.2 pTM=0.55 ipTM=0.171 tol=0.647
2024-07-14 00:11:12,173 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=78.8 pTM=0.549 ipTM=0.171 tol=0.962
2024-07-14 00:11:32,656 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=78.5 pTM=0.545 ipTM=0.168 tol=0.923
2024-07-14 00:11:53,145 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=78.6 pTM=0.547 ipTM=0.169 tol=0.648
2024-07-14 00:12:13,666 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=78.7 pTM=0.548 ipTM=0.167 tol=0.582
2024-07-14 00:12:34,175 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=78.3 pTM=0.546 ipTM=0.167 tol=0.465
2024-07-14 00:12:34,176 alphafold2_multimer_v3_model_5_seed_000 took 245.7s (11 recycles)
2024-07-14 00:12:34,744 reranking models by 'multimer' metric
2024-07-14 00:12:35,957 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-14 00:13:19,356 Relaxation took 44.6s
2024-07-14 00:13:19,356 rank_001_alphafold2_multimer_v3_model_2_seed_000 pLDDT=81.7 pTM=0.576 ipTM=0.24
2024-07-14 00:14:11,737 Relaxation took 52.4s
2024-07-14 00:14:11,737 rank_002_alphafold2_multimer_v3_model_5_seed_000 pLDDT=78.3 pTM=0.546 ipTM=0.167
2024-07-14 00:16:14,218 Relaxation took 122.5s
2024-07-14 00:16:14,218 rank_003_alphafold2_multimer_v3_model_3_seed_000 pLDDT=79.1 pTM=0.549 ipTM=0.162
2024-07-14 00:16:44,059 Relaxation took 29.8s
2024-07-14 00:16:44,059 rank_004_alphafold2_multimer_v3_model_4_seed_000 pLDDT=78.6 pTM=0.549 ipTM=0.156
2024-07-14 00:19:01,205 Relaxation took 137.1s
2024-07-14 00:19:01,205 rank_005_alphafold2_multimer_v3_model_1_seed_000 pLDDT=81.3 pTM=0.544 ipTM=0.147
2024-07-14 00:19:04,467 Done