2024-07-13 23:43:18,104 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-13 23:43:18,443 Running on GPU
2024-07-13 23:43:34,297 Found 6 citations for tools or databases
2024-07-13 23:43:34,297 Query 1/1: UFSP1_S35A1 (length 479)
2024-07-13 23:43:34,749 Sleeping for 8s. Reason: PENDING
2024-07-13 23:43:43,173 Sleeping for 5s. Reason: RUNNING
2024-07-13 23:43:48,593 Sleeping for 8s. Reason: RUNNING
2024-07-13 23:43:57,015 Sleeping for 6s. Reason: RUNNING
2024-07-13 23:44:03,464 Sleeping for 7s. Reason: RUNNING
2024-07-13 23:44:10,870 Sleeping for 7s. Reason: RUNNING
2024-07-13 23:44:18,328 Sleeping for 10s. Reason: RUNNING
2024-07-13 23:44:30,409 Sleeping for 8s. Reason: PENDING
2024-07-13 23:44:38,826 Sleeping for 6s. Reason: RUNNING
2024-07-13 23:44:45,247 Sleeping for 5s. Reason: RUNNING
2024-07-13 23:44:52,489 Setting max_seq=508, max_extra_seq=2048
2024-07-13 23:48:32,541 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=72.9 pTM=0.597 ipTM=0.148
2024-07-13 23:48:38,705 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=74.5 pTM=0.624 ipTM=0.155 tol=2.22
2024-07-13 23:48:44,867 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=74.3 pTM=0.625 ipTM=0.151 tol=0.826
2024-07-13 23:48:51,029 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=74.1 pTM=0.628 ipTM=0.153 tol=0.505
2024-07-13 23:48:57,201 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=73.8 pTM=0.63 ipTM=0.161 tol=0.672
2024-07-13 23:49:03,372 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=73.9 pTM=0.631 ipTM=0.164 tol=0.444
2024-07-13 23:49:03,372 alphafold2_multimer_v3_model_1_seed_000 took 193.0s (5 recycles)
2024-07-13 23:49:09,711 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73 pTM=0.576 ipTM=0.115
2024-07-13 23:49:15,886 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=73.1 pTM=0.587 ipTM=0.122 tol=2.41
2024-07-13 23:49:22,060 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=74.1 pTM=0.587 ipTM=0.126 tol=1.6
2024-07-13 23:49:28,234 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=74.1 pTM=0.587 ipTM=0.128 tol=1.34
2024-07-13 23:49:34,411 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=74.2 pTM=0.584 ipTM=0.125 tol=0.578
2024-07-13 23:49:40,585 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=75 pTM=0.589 ipTM=0.129 tol=0.922
2024-07-13 23:49:46,762 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=74.7 pTM=0.588 ipTM=0.127 tol=0.991
2024-07-13 23:49:52,939 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=74.7 pTM=0.584 ipTM=0.127 tol=1.02
2024-07-13 23:49:59,111 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=74.6 pTM=0.585 ipTM=0.128 tol=0.801
2024-07-13 23:50:05,281 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=74.6 pTM=0.582 ipTM=0.131 tol=0.729
2024-07-13 23:50:11,454 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=74.2 pTM=0.575 ipTM=0.126 tol=0.5
2024-07-13 23:50:17,627 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=74.5 pTM=0.573 ipTM=0.124 tol=0.694
2024-07-13 23:50:23,802 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=74.8 pTM=0.578 ipTM=0.122 tol=0.496
2024-07-13 23:50:23,803 alphafold2_multimer_v3_model_2_seed_000 took 80.3s (12 recycles)
2024-07-13 23:50:30,141 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=76.9 pTM=0.608 ipTM=0.182
2024-07-13 23:50:36,325 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=77.1 pTM=0.63 ipTM=0.19 tol=3.59
2024-07-13 23:50:42,502 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=76.9 pTM=0.623 ipTM=0.178 tol=1.62
2024-07-13 23:50:48,680 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=76.6 pTM=0.623 ipTM=0.179 tol=1.2
2024-07-13 23:50:54,855 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=77.1 pTM=0.622 ipTM=0.179 tol=1.35
2024-07-13 23:51:01,034 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=77.5 pTM=0.624 ipTM=0.179 tol=0.978
2024-07-13 23:51:07,211 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=77.5 pTM=0.623 ipTM=0.18 tol=0.443
2024-07-13 23:51:07,212 alphafold2_multimer_v3_model_3_seed_000 took 43.2s (6 recycles)
2024-07-13 23:51:13,560 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=75.6 pTM=0.624 ipTM=0.171
2024-07-13 23:51:19,764 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=76.2 pTM=0.636 ipTM=0.168 tol=4.98
2024-07-13 23:51:25,961 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=75.4 pTM=0.639 ipTM=0.181 tol=2.32
2024-07-13 23:51:32,152 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=75.6 pTM=0.637 ipTM=0.177 tol=2.5
2024-07-13 23:51:38,349 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.1 pTM=0.639 ipTM=0.185 tol=2.43
2024-07-13 23:51:44,547 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=76.1 pTM=0.641 ipTM=0.179 tol=1.9
2024-07-13 23:51:50,738 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=75.8 pTM=0.641 ipTM=0.182 tol=2.58
2024-07-13 23:51:56,938 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=76 pTM=0.642 ipTM=0.176 tol=2.39
2024-07-13 23:52:03,141 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=76.1 pTM=0.641 ipTM=0.176 tol=3.41
2024-07-13 23:52:09,352 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=75.9 pTM=0.641 ipTM=0.168 tol=4.74
2024-07-13 23:52:15,551 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=76.1 pTM=0.637 ipTM=0.176 tol=3.85
2024-07-13 23:52:21,746 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=76.8 pTM=0.639 ipTM=0.178 tol=4.17
2024-07-13 23:52:27,949 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=76.6 pTM=0.645 ipTM=0.184 tol=3.35
2024-07-13 23:52:34,154 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=76.8 pTM=0.642 ipTM=0.177 tol=3.11
2024-07-13 23:52:40,354 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=76.2 pTM=0.641 ipTM=0.181 tol=3.45
2024-07-13 23:52:46,542 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=76.3 pTM=0.64 ipTM=0.176 tol=3.34
2024-07-13 23:52:52,739 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=76.4 pTM=0.642 ipTM=0.182 tol=3.6
2024-07-13 23:52:58,942 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=76.2 pTM=0.641 ipTM=0.173 tol=3.12
2024-07-13 23:53:05,150 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=76.2 pTM=0.642 ipTM=0.183 tol=3.28
2024-07-13 23:53:11,364 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=76.1 pTM=0.639 ipTM=0.173 tol=4.12
2024-07-13 23:53:17,580 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=75.6 pTM=0.642 ipTM=0.185 tol=3.54
2024-07-13 23:53:23,800 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=76.4 pTM=0.641 ipTM=0.177 tol=3.19
2024-07-13 23:53:29,997 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=76.2 pTM=0.638 ipTM=0.179 tol=3.14
2024-07-13 23:53:36,205 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=76.3 pTM=0.639 ipTM=0.175 tol=2.94
2024-07-13 23:53:42,412 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=76.2 pTM=0.642 ipTM=0.181 tol=3.52
2024-07-13 23:53:48,612 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=76.8 pTM=0.64 ipTM=0.174 tol=2.92
2024-07-13 23:53:54,822 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=76.4 pTM=0.642 ipTM=0.185 tol=4.11
2024-07-13 23:54:01,016 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=76.2 pTM=0.639 ipTM=0.173 tol=2.86
2024-07-13 23:54:07,221 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=76.4 pTM=0.64 ipTM=0.18 tol=2.37
2024-07-13 23:54:13,413 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=76.8 pTM=0.639 ipTM=0.174 tol=2.9
2024-07-13 23:54:19,604 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=76.7 pTM=0.639 ipTM=0.18 tol=3.36
2024-07-13 23:54:19,605 alphafold2_multimer_v3_model_4_seed_000 took 192.2s (30 recycles)
2024-07-13 23:54:25,946 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=76.1 pTM=0.615 ipTM=0.172
2024-07-13 23:54:32,146 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=77.2 pTM=0.635 ipTM=0.177 tol=2.82
2024-07-13 23:54:38,338 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=77.6 pTM=0.633 ipTM=0.17 tol=1.87
2024-07-13 23:54:44,533 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=77.2 pTM=0.633 ipTM=0.17 tol=0.736
2024-07-13 23:54:50,729 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=77.7 pTM=0.634 ipTM=0.17 tol=0.736
2024-07-13 23:54:56,925 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=77.9 pTM=0.635 ipTM=0.172 tol=0.42
2024-07-13 23:54:56,926 alphafold2_multimer_v3_model_5_seed_000 took 37.2s (5 recycles)
2024-07-13 23:54:57,083 reranking models by 'multimer' metric
2024-07-13 23:54:59,880 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-13 23:55:17,324 Relaxation took 20.2s
2024-07-13 23:55:17,324 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=76.7 pTM=0.639 ipTM=0.18
2024-07-13 23:55:26,013 Relaxation took 8.7s
2024-07-13 23:55:26,013 rank_002_alphafold2_multimer_v3_model_3_seed_000 pLDDT=77.5 pTM=0.623 ipTM=0.18
2024-07-13 23:55:47,139 Relaxation took 21.1s
2024-07-13 23:55:47,140 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=77.9 pTM=0.635 ipTM=0.172
2024-07-13 23:55:57,243 Relaxation took 10.1s
2024-07-13 23:55:57,244 rank_004_alphafold2_multimer_v3_model_1_seed_000 pLDDT=73.9 pTM=0.631 ipTM=0.164
2024-07-13 23:56:17,213 Relaxation took 20.0s
2024-07-13 23:56:17,214 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=74.8 pTM=0.578 ipTM=0.122
2024-07-13 23:56:18,279 Done