2024-07-14 02:54:01,064 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-14 02:54:01,401 Running on GPU
2024-07-14 02:54:13,134 Found 6 citations for tools or databases
2024-07-14 02:54:13,134 Query 1/1: YJ016_NEBL (length 1201)
2024-07-14 02:54:15,697 Sleeping for 9s. Reason: PENDING
2024-07-14 02:54:25,131 Sleeping for 5s. Reason: RUNNING
2024-07-14 02:54:30,578 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:54:38,003 Sleeping for 8s. Reason: RUNNING
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2024-07-14 02:54:53,834 Sleeping for 9s. Reason: RUNNING
2024-07-14 02:55:03,258 Sleeping for 6s. Reason: RUNNING
2024-07-14 02:55:09,668 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:55:20,110 Sleeping for 9s. Reason: RUNNING
2024-07-14 02:55:29,595 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:55:36,995 Sleeping for 8s. Reason: RUNNING
2024-07-14 02:55:45,421 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:55:52,861 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:56:00,278 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:56:10,699 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:56:18,135 Sleeping for 5s. Reason: RUNNING
2024-07-14 02:56:23,556 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:56:33,980 Sleeping for 6s. Reason: RUNNING
2024-07-14 02:56:40,396 Sleeping for 8s. Reason: RUNNING
2024-07-14 02:56:48,839 Sleeping for 6s. Reason: RUNNING
2024-07-14 02:56:55,268 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:57:05,701 Sleeping for 6s. Reason: RUNNING
2024-07-14 02:57:12,132 Sleeping for 9s. Reason: RUNNING
2024-07-14 02:57:21,579 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:57:30,726 Sleeping for 7s. Reason: PENDING
2024-07-14 02:57:38,144 Sleeping for 6s. Reason: RUNNING
2024-07-14 02:57:44,557 Sleeping for 8s. Reason: RUNNING
2024-07-14 02:57:52,988 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:58:00,398 Sleeping for 5s. Reason: RUNNING
2024-07-14 02:58:05,810 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:58:16,228 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:58:26,673 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:58:37,111 Sleeping for 9s. Reason: RUNNING
2024-07-14 02:58:46,548 Sleeping for 7s. Reason: RUNNING
2024-07-14 02:58:53,956 Sleeping for 5s. Reason: RUNNING
2024-07-14 02:58:59,375 Sleeping for 10s. Reason: RUNNING
2024-07-14 02:59:13,154 Setting max_seq=508, max_extra_seq=2043
2024-07-14 03:03:38,702 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=24.6 pTM=0.179 ipTM=0.15
2024-07-14 03:04:14,584 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=24.6 pTM=0.185 ipTM=0.17 tol=24.4
2024-07-14 03:04:50,557 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=25.1 pTM=0.185 ipTM=0.189 tol=13.6
2024-07-14 03:05:26,911 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=25.3 pTM=0.191 ipTM=0.198 tol=7.27
2024-07-14 03:06:03,063 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=26 pTM=0.192 ipTM=0.204 tol=10.5
2024-07-14 03:06:39,239 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=26.1 pTM=0.191 ipTM=0.196 tol=6.37
2024-07-14 03:07:15,537 alphafold2_multimer_v3_model_1_seed_000 recycle=6 pLDDT=26.5 pTM=0.191 ipTM=0.2 tol=5.41
2024-07-14 03:07:51,880 alphafold2_multimer_v3_model_1_seed_000 recycle=7 pLDDT=26.4 pTM=0.19 ipTM=0.193 tol=5.69
2024-07-14 03:08:28,301 alphafold2_multimer_v3_model_1_seed_000 recycle=8 pLDDT=27.6 pTM=0.189 ipTM=0.191 tol=4.12
2024-07-14 03:09:04,926 alphafold2_multimer_v3_model_1_seed_000 recycle=9 pLDDT=27.3 pTM=0.19 ipTM=0.192 tol=3.01
2024-07-14 03:09:41,388 alphafold2_multimer_v3_model_1_seed_000 recycle=10 pLDDT=27.3 pTM=0.19 ipTM=0.196 tol=3.01
2024-07-14 03:10:17,837 alphafold2_multimer_v3_model_1_seed_000 recycle=11 pLDDT=27.5 pTM=0.189 ipTM=0.19 tol=8.89
2024-07-14 03:10:54,123 alphafold2_multimer_v3_model_1_seed_000 recycle=12 pLDDT=27.5 pTM=0.189 ipTM=0.192 tol=4.08
2024-07-14 03:11:30,607 alphafold2_multimer_v3_model_1_seed_000 recycle=13 pLDDT=27.1 pTM=0.19 ipTM=0.193 tol=3.82
2024-07-14 03:12:07,110 alphafold2_multimer_v3_model_1_seed_000 recycle=14 pLDDT=27.5 pTM=0.19 ipTM=0.194 tol=3.42
2024-07-14 03:12:43,433 alphafold2_multimer_v3_model_1_seed_000 recycle=15 pLDDT=27.6 pTM=0.189 ipTM=0.187 tol=2.65
2024-07-14 03:13:19,829 alphafold2_multimer_v3_model_1_seed_000 recycle=16 pLDDT=27.1 pTM=0.191 ipTM=0.196 tol=2.84
2024-07-14 03:13:56,184 alphafold2_multimer_v3_model_1_seed_000 recycle=17 pLDDT=27 pTM=0.19 ipTM=0.194 tol=2.92
2024-07-14 03:14:32,564 alphafold2_multimer_v3_model_1_seed_000 recycle=18 pLDDT=27.2 pTM=0.19 ipTM=0.194 tol=3.78
2024-07-14 03:15:08,844 alphafold2_multimer_v3_model_1_seed_000 recycle=19 pLDDT=27.6 pTM=0.188 ipTM=0.186 tol=3.5
2024-07-14 03:15:45,327 alphafold2_multimer_v3_model_1_seed_000 recycle=20 pLDDT=27.4 pTM=0.189 ipTM=0.188 tol=2.75
2024-07-14 03:16:21,724 alphafold2_multimer_v3_model_1_seed_000 recycle=21 pLDDT=27.7 pTM=0.188 ipTM=0.185 tol=2.35
2024-07-14 03:16:58,278 alphafold2_multimer_v3_model_1_seed_000 recycle=22 pLDDT=27.9 pTM=0.189 ipTM=0.19 tol=2.16
2024-07-14 03:17:34,530 alphafold2_multimer_v3_model_1_seed_000 recycle=23 pLDDT=27.1 pTM=0.189 ipTM=0.193 tol=2.76
2024-07-14 03:18:10,779 alphafold2_multimer_v3_model_1_seed_000 recycle=24 pLDDT=27.1 pTM=0.19 ipTM=0.194 tol=2.41
2024-07-14 03:18:47,041 alphafold2_multimer_v3_model_1_seed_000 recycle=25 pLDDT=27.3 pTM=0.189 ipTM=0.194 tol=3.16
2024-07-14 03:19:23,386 alphafold2_multimer_v3_model_1_seed_000 recycle=26 pLDDT=27.8 pTM=0.189 ipTM=0.19 tol=2.57
2024-07-14 03:19:59,934 alphafold2_multimer_v3_model_1_seed_000 recycle=27 pLDDT=27.3 pTM=0.188 ipTM=0.189 tol=3.05
2024-07-14 03:20:36,354 alphafold2_multimer_v3_model_1_seed_000 recycle=28 pLDDT=27.4 pTM=0.188 ipTM=0.187 tol=3.2
2024-07-14 03:21:12,643 alphafold2_multimer_v3_model_1_seed_000 recycle=29 pLDDT=27.4 pTM=0.188 ipTM=0.186 tol=3.54
2024-07-14 03:21:48,977 alphafold2_multimer_v3_model_1_seed_000 recycle=30 pLDDT=27.3 pTM=0.189 ipTM=0.192 tol=2.81
2024-07-14 03:21:48,978 alphafold2_multimer_v3_model_1_seed_000 took 1295.9s (30 recycles)
2024-07-14 03:22:26,166 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=28 pTM=0.178 ipTM=0.15
2024-07-14 03:23:02,722 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=28 pTM=0.178 ipTM=0.175 tol=16.2
2024-07-14 03:23:39,283 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=27.8 pTM=0.178 ipTM=0.196 tol=10.2
2024-07-14 03:24:15,793 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=28.3 pTM=0.179 ipTM=0.197 tol=9.91
2024-07-14 03:24:52,252 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=29 pTM=0.18 ipTM=0.185 tol=5.38
2024-07-14 03:25:28,589 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=28.9 pTM=0.18 ipTM=0.183 tol=4.59
2024-07-14 03:26:04,973 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=28.7 pTM=0.181 ipTM=0.186 tol=5.18
2024-07-14 03:26:41,428 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=28.9 pTM=0.179 ipTM=0.182 tol=6.17
2024-07-14 03:27:17,777 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=29.9 pTM=0.18 ipTM=0.178 tol=7.97
2024-07-14 03:27:54,368 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=29.9 pTM=0.179 ipTM=0.173 tol=5.19
2024-07-14 03:28:30,704 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=29.1 pTM=0.179 ipTM=0.186 tol=5.6
2024-07-14 03:29:07,057 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=29.7 pTM=0.18 ipTM=0.186 tol=3.83
2024-07-14 03:29:43,644 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=29.5 pTM=0.179 ipTM=0.176 tol=3.41
2024-07-14 03:30:20,077 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=29.4 pTM=0.179 ipTM=0.175 tol=3.15
2024-07-14 03:30:56,549 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=29.7 pTM=0.179 ipTM=0.178 tol=4.81
2024-07-14 03:31:33,029 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=29.5 pTM=0.179 ipTM=0.18 tol=2.73
2024-07-14 03:32:09,564 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=29.1 pTM=0.179 ipTM=0.183 tol=3.68
2024-07-14 03:32:46,055 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=29.7 pTM=0.179 ipTM=0.178 tol=3.6
2024-07-14 03:33:22,534 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=29.4 pTM=0.179 ipTM=0.184 tol=3.04
2024-07-14 03:33:58,996 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=30 pTM=0.179 ipTM=0.181 tol=2.86
2024-07-14 03:34:35,622 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=29.3 pTM=0.179 ipTM=0.186 tol=4.63
2024-07-14 03:35:12,063 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=29 pTM=0.179 ipTM=0.183 tol=3.8
2024-07-14 03:35:48,384 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=29.9 pTM=0.179 ipTM=0.179 tol=3.47
2024-07-14 03:36:25,014 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=29.4 pTM=0.179 ipTM=0.188 tol=3.26
2024-07-14 03:37:01,370 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=29.5 pTM=0.18 ipTM=0.187 tol=3.31
2024-07-14 03:37:38,011 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=29.1 pTM=0.18 ipTM=0.192 tol=4.38
2024-07-14 03:38:14,475 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=29.6 pTM=0.179 ipTM=0.19 tol=3.85
2024-07-14 03:38:51,058 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=29.1 pTM=0.18 ipTM=0.187 tol=2.96
2024-07-14 03:39:27,501 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=29.5 pTM=0.179 ipTM=0.187 tol=3.56
2024-07-14 03:40:03,856 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=29.4 pTM=0.179 ipTM=0.183 tol=4.06
2024-07-14 03:40:40,231 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=29.5 pTM=0.179 ipTM=0.178 tol=4.29
2024-07-14 03:40:40,232 alphafold2_multimer_v3_model_2_seed_000 took 1130.4s (30 recycles)
2024-07-14 03:41:17,724 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=24.7 pTM=0.172 ipTM=0.157
2024-07-14 03:41:54,445 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=23.4 pTM=0.179 ipTM=0.183 tol=26.8
2024-07-14 03:42:31,369 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=23.4 pTM=0.184 ipTM=0.179 tol=18.6
2024-07-14 03:43:08,235 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=23.8 pTM=0.185 ipTM=0.183 tol=12.3
2024-07-14 03:43:45,122 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=25 pTM=0.184 ipTM=0.183 tol=7.17
2024-07-14 03:44:21,964 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=24.8 pTM=0.186 ipTM=0.188 tol=10.6
2024-07-14 03:44:58,755 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=25.2 pTM=0.187 ipTM=0.195 tol=6.52
2024-07-14 03:45:35,454 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=25.4 pTM=0.187 ipTM=0.196 tol=8.52
2024-07-14 03:46:12,159 alphafold2_multimer_v3_model_3_seed_000 recycle=8 pLDDT=26.1 pTM=0.187 ipTM=0.194 tol=8.16
2024-07-14 03:46:48,887 alphafold2_multimer_v3_model_3_seed_000 recycle=9 pLDDT=26.3 pTM=0.187 ipTM=0.193 tol=5.41
2024-07-14 03:47:25,646 alphafold2_multimer_v3_model_3_seed_000 recycle=10 pLDDT=26.5 pTM=0.187 ipTM=0.195 tol=5.56
2024-07-14 03:48:02,420 alphafold2_multimer_v3_model_3_seed_000 recycle=11 pLDDT=26.8 pTM=0.186 ipTM=0.194 tol=8.76
2024-07-14 03:48:39,208 alphafold2_multimer_v3_model_3_seed_000 recycle=12 pLDDT=26.7 pTM=0.187 ipTM=0.194 tol=5.76
2024-07-14 03:49:16,022 alphafold2_multimer_v3_model_3_seed_000 recycle=13 pLDDT=26.7 pTM=0.187 ipTM=0.197 tol=4.51
2024-07-14 03:49:52,791 alphafold2_multimer_v3_model_3_seed_000 recycle=14 pLDDT=26.4 pTM=0.188 ipTM=0.202 tol=4.08
2024-07-14 03:50:29,656 alphafold2_multimer_v3_model_3_seed_000 recycle=15 pLDDT=26.7 pTM=0.187 ipTM=0.2 tol=6.77
2024-07-14 03:51:06,391 alphafold2_multimer_v3_model_3_seed_000 recycle=16 pLDDT=26.2 pTM=0.189 ipTM=0.208 tol=4.33
2024-07-14 03:51:43,219 alphafold2_multimer_v3_model_3_seed_000 recycle=17 pLDDT=26.7 pTM=0.189 ipTM=0.209 tol=8.5
2024-07-14 03:52:19,974 alphafold2_multimer_v3_model_3_seed_000 recycle=18 pLDDT=26.5 pTM=0.188 ipTM=0.205 tol=4.32
2024-07-14 03:52:56,911 alphafold2_multimer_v3_model_3_seed_000 recycle=19 pLDDT=27 pTM=0.189 ipTM=0.206 tol=5.19
2024-07-14 03:53:33,689 alphafold2_multimer_v3_model_3_seed_000 recycle=20 pLDDT=26.9 pTM=0.189 ipTM=0.205 tol=4.44
2024-07-14 03:54:10,471 alphafold2_multimer_v3_model_3_seed_000 recycle=21 pLDDT=26.2 pTM=0.191 ipTM=0.213 tol=7.6
2024-07-14 03:54:47,217 alphafold2_multimer_v3_model_3_seed_000 recycle=22 pLDDT=27 pTM=0.189 ipTM=0.207 tol=7.97
2024-07-14 03:55:23,974 alphafold2_multimer_v3_model_3_seed_000 recycle=23 pLDDT=26.1 pTM=0.19 ipTM=0.212 tol=4.83
2024-07-14 03:56:00,841 alphafold2_multimer_v3_model_3_seed_000 recycle=24 pLDDT=26.7 pTM=0.191 ipTM=0.214 tol=6.17
2024-07-14 03:56:37,693 alphafold2_multimer_v3_model_3_seed_000 recycle=25 pLDDT=26.1 pTM=0.192 ipTM=0.214 tol=3.84
2024-07-14 03:57:14,382 alphafold2_multimer_v3_model_3_seed_000 recycle=26 pLDDT=26.2 pTM=0.19 ipTM=0.21 tol=4.63
2024-07-14 03:57:50,967 alphafold2_multimer_v3_model_3_seed_000 recycle=27 pLDDT=26.4 pTM=0.192 ipTM=0.218 tol=4.23
2024-07-14 03:58:27,605 alphafold2_multimer_v3_model_3_seed_000 recycle=28 pLDDT=26.7 pTM=0.19 ipTM=0.211 tol=2.94
2024-07-14 03:59:04,433 alphafold2_multimer_v3_model_3_seed_000 recycle=29 pLDDT=26.2 pTM=0.192 ipTM=0.218 tol=6.99
2024-07-14 03:59:41,139 alphafold2_multimer_v3_model_3_seed_000 recycle=30 pLDDT=26.5 pTM=0.191 ipTM=0.217 tol=5.48
2024-07-14 03:59:41,140 alphafold2_multimer_v3_model_3_seed_000 took 1140.0s (30 recycles)
2024-07-14 04:00:18,632 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=25.6 pTM=0.17 ipTM=0.133
2024-07-14 04:00:55,426 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=25.8 pTM=0.18 ipTM=0.159 tol=26
2024-07-14 04:01:32,248 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=26.9 pTM=0.184 ipTM=0.167 tol=19.8
2024-07-14 04:02:09,066 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=27.4 pTM=0.185 ipTM=0.171 tol=13.1
2024-07-14 04:02:45,940 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=28.2 pTM=0.186 ipTM=0.17 tol=8.62
2024-07-14 04:03:22,752 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=28.2 pTM=0.187 ipTM=0.176 tol=6.56
2024-07-14 04:03:59,404 alphafold2_multimer_v3_model_4_seed_000 recycle=6 pLDDT=28.8 pTM=0.187 ipTM=0.175 tol=6.61
2024-07-14 04:04:36,059 alphafold2_multimer_v3_model_4_seed_000 recycle=7 pLDDT=29 pTM=0.186 ipTM=0.173 tol=9.01
2024-07-14 04:05:12,631 alphafold2_multimer_v3_model_4_seed_000 recycle=8 pLDDT=29.2 pTM=0.186 ipTM=0.177 tol=6.59
2024-07-14 04:05:49,182 alphafold2_multimer_v3_model_4_seed_000 recycle=9 pLDDT=29 pTM=0.186 ipTM=0.177 tol=11.7
2024-07-14 04:06:25,819 alphafold2_multimer_v3_model_4_seed_000 recycle=10 pLDDT=29.4 pTM=0.188 ipTM=0.178 tol=7.08
2024-07-14 04:07:02,423 alphafold2_multimer_v3_model_4_seed_000 recycle=11 pLDDT=29.6 pTM=0.187 ipTM=0.181 tol=6.54
2024-07-14 04:07:39,064 alphafold2_multimer_v3_model_4_seed_000 recycle=12 pLDDT=29.4 pTM=0.189 ipTM=0.188 tol=3.47
2024-07-14 04:08:15,728 alphafold2_multimer_v3_model_4_seed_000 recycle=13 pLDDT=29.5 pTM=0.188 ipTM=0.184 tol=5.8
2024-07-14 04:08:52,382 alphafold2_multimer_v3_model_4_seed_000 recycle=14 pLDDT=29.3 pTM=0.189 ipTM=0.187 tol=3.77
2024-07-14 04:09:29,152 alphafold2_multimer_v3_model_4_seed_000 recycle=15 pLDDT=29.2 pTM=0.191 ipTM=0.191 tol=5.85
2024-07-14 04:10:05,885 alphafold2_multimer_v3_model_4_seed_000 recycle=16 pLDDT=29.3 pTM=0.189 ipTM=0.187 tol=5.69
2024-07-14 04:10:42,557 alphafold2_multimer_v3_model_4_seed_000 recycle=17 pLDDT=29 pTM=0.191 ipTM=0.191 tol=5.25
2024-07-14 04:11:19,348 alphafold2_multimer_v3_model_4_seed_000 recycle=18 pLDDT=28.9 pTM=0.19 ipTM=0.189 tol=6.54
2024-07-14 04:11:55,998 alphafold2_multimer_v3_model_4_seed_000 recycle=19 pLDDT=29.3 pTM=0.19 ipTM=0.185 tol=5.91
2024-07-14 04:12:32,705 alphafold2_multimer_v3_model_4_seed_000 recycle=20 pLDDT=29.2 pTM=0.19 ipTM=0.192 tol=6.7
2024-07-14 04:13:09,401 alphafold2_multimer_v3_model_4_seed_000 recycle=21 pLDDT=29.3 pTM=0.19 ipTM=0.19 tol=7.74
2024-07-14 04:13:46,265 alphafold2_multimer_v3_model_4_seed_000 recycle=22 pLDDT=29.6 pTM=0.19 ipTM=0.194 tol=4.88
2024-07-14 04:14:22,969 alphafold2_multimer_v3_model_4_seed_000 recycle=23 pLDDT=29.5 pTM=0.191 ipTM=0.199 tol=4.98
2024-07-14 04:14:59,674 alphafold2_multimer_v3_model_4_seed_000 recycle=24 pLDDT=29.3 pTM=0.191 ipTM=0.197 tol=4.06
2024-07-14 04:15:36,533 alphafold2_multimer_v3_model_4_seed_000 recycle=25 pLDDT=29.4 pTM=0.191 ipTM=0.194 tol=3.49
2024-07-14 04:16:13,224 alphafold2_multimer_v3_model_4_seed_000 recycle=26 pLDDT=29 pTM=0.192 ipTM=0.197 tol=9.22
2024-07-14 04:16:49,903 alphafold2_multimer_v3_model_4_seed_000 recycle=27 pLDDT=29.6 pTM=0.192 ipTM=0.201 tol=7.89
2024-07-14 04:17:26,726 alphafold2_multimer_v3_model_4_seed_000 recycle=28 pLDDT=29.5 pTM=0.19 ipTM=0.195 tol=5.59
2024-07-14 04:18:03,386 alphafold2_multimer_v3_model_4_seed_000 recycle=29 pLDDT=29.2 pTM=0.193 ipTM=0.203 tol=7.37
2024-07-14 04:18:40,191 alphafold2_multimer_v3_model_4_seed_000 recycle=30 pLDDT=29.1 pTM=0.192 ipTM=0.202 tol=3.3
2024-07-14 04:18:40,192 alphafold2_multimer_v3_model_4_seed_000 took 1138.2s (30 recycles)
2024-07-14 04:19:17,705 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=24.1 pTM=0.175 ipTM=0.147
2024-07-14 04:19:54,410 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=24.1 pTM=0.179 ipTM=0.15 tol=16.5
2024-07-14 04:20:31,085 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=24.9 pTM=0.182 ipTM=0.149 tol=12.9
2024-07-14 04:21:07,806 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=25.2 pTM=0.184 ipTM=0.151 tol=8.41
2024-07-14 04:21:44,469 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=26.2 pTM=0.184 ipTM=0.149 tol=6.21
2024-07-14 04:22:21,087 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=25.6 pTM=0.183 ipTM=0.15 tol=5.7
2024-07-14 04:22:57,669 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=26 pTM=0.184 ipTM=0.149 tol=5.06
2024-07-14 04:23:34,117 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=26.3 pTM=0.184 ipTM=0.148 tol=7.54
2024-07-14 04:24:10,771 alphafold2_multimer_v3_model_5_seed_000 recycle=8 pLDDT=26.8 pTM=0.185 ipTM=0.149 tol=6.06
2024-07-14 04:24:47,417 alphafold2_multimer_v3_model_5_seed_000 recycle=9 pLDDT=26.6 pTM=0.185 ipTM=0.149 tol=6.73
2024-07-14 04:25:23,964 alphafold2_multimer_v3_model_5_seed_000 recycle=10 pLDDT=26.8 pTM=0.185 ipTM=0.15 tol=8.59
2024-07-14 04:26:00,629 alphafold2_multimer_v3_model_5_seed_000 recycle=11 pLDDT=27.2 pTM=0.185 ipTM=0.149 tol=4.79
2024-07-14 04:26:37,222 alphafold2_multimer_v3_model_5_seed_000 recycle=12 pLDDT=26.8 pTM=0.185 ipTM=0.15 tol=8.28
2024-07-14 04:27:13,712 alphafold2_multimer_v3_model_5_seed_000 recycle=13 pLDDT=27.1 pTM=0.185 ipTM=0.149 tol=8.9
2024-07-14 04:27:50,122 alphafold2_multimer_v3_model_5_seed_000 recycle=14 pLDDT=26.8 pTM=0.185 ipTM=0.15 tol=3.35
2024-07-14 04:28:26,625 alphafold2_multimer_v3_model_5_seed_000 recycle=15 pLDDT=27 pTM=0.184 ipTM=0.149 tol=3.14
2024-07-14 04:29:03,103 alphafold2_multimer_v3_model_5_seed_000 recycle=16 pLDDT=26.6 pTM=0.185 ipTM=0.151 tol=3.25
2024-07-14 04:29:39,630 alphafold2_multimer_v3_model_5_seed_000 recycle=17 pLDDT=26.8 pTM=0.184 ipTM=0.15 tol=2.93
2024-07-14 04:30:16,363 alphafold2_multimer_v3_model_5_seed_000 recycle=18 pLDDT=26.8 pTM=0.185 ipTM=0.15 tol=3.34
2024-07-14 04:30:52,975 alphafold2_multimer_v3_model_5_seed_000 recycle=19 pLDDT=27.2 pTM=0.184 ipTM=0.149 tol=5.17
2024-07-14 04:31:29,622 alphafold2_multimer_v3_model_5_seed_000 recycle=20 pLDDT=27.2 pTM=0.183 ipTM=0.148 tol=3.17
2024-07-14 04:32:06,239 alphafold2_multimer_v3_model_5_seed_000 recycle=21 pLDDT=26.9 pTM=0.184 ipTM=0.15 tol=3.05
2024-07-14 04:32:42,912 alphafold2_multimer_v3_model_5_seed_000 recycle=22 pLDDT=27.1 pTM=0.184 ipTM=0.15 tol=2.86
2024-07-14 04:33:19,578 alphafold2_multimer_v3_model_5_seed_000 recycle=23 pLDDT=26.6 pTM=0.185 ipTM=0.151 tol=2.86
2024-07-14 04:33:56,282 alphafold2_multimer_v3_model_5_seed_000 recycle=24 pLDDT=27 pTM=0.184 ipTM=0.149 tol=3.1
2024-07-14 04:34:32,789 alphafold2_multimer_v3_model_5_seed_000 recycle=25 pLDDT=26.9 pTM=0.184 ipTM=0.153 tol=2.9
2024-07-14 04:35:09,566 alphafold2_multimer_v3_model_5_seed_000 recycle=26 pLDDT=26.9 pTM=0.184 ipTM=0.15 tol=2.14
2024-07-14 04:35:46,354 alphafold2_multimer_v3_model_5_seed_000 recycle=27 pLDDT=27 pTM=0.184 ipTM=0.15 tol=3.04
2024-07-14 04:36:22,832 alphafold2_multimer_v3_model_5_seed_000 recycle=28 pLDDT=27 pTM=0.184 ipTM=0.148 tol=3.32
2024-07-14 04:36:59,569 alphafold2_multimer_v3_model_5_seed_000 recycle=29 pLDDT=26.8 pTM=0.184 ipTM=0.15 tol=5.36
2024-07-14 04:37:36,238 alphafold2_multimer_v3_model_5_seed_000 recycle=30 pLDDT=27 pTM=0.184 ipTM=0.149 tol=5.5
2024-07-14 04:37:36,239 alphafold2_multimer_v3_model_5_seed_000 took 1135.2s (30 recycles)
2024-07-14 04:37:37,126 reranking models by 'multimer' metric
2024-07-14 04:37:38,248 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-14 04:39:41,189 Relaxation took 124.1s
2024-07-14 04:39:41,189 rank_001_alphafold2_multimer_v3_model_3_seed_000 pLDDT=26.5 pTM=0.191 ipTM=0.217
2024-07-14 04:41:47,600 Relaxation took 126.4s
2024-07-14 04:41:47,600 rank_002_alphafold2_multimer_v3_model_4_seed_000 pLDDT=29.1 pTM=0.192 ipTM=0.202
2024-07-14 04:44:04,674 Relaxation took 137.1s
2024-07-14 04:44:04,674 rank_003_alphafold2_multimer_v3_model_1_seed_000 pLDDT=27.3 pTM=0.189 ipTM=0.192
2024-07-14 04:45:48,838 Relaxation took 104.2s
2024-07-14 04:45:48,838 rank_004_alphafold2_multimer_v3_model_2_seed_000 pLDDT=29.5 pTM=0.179 ipTM=0.178
2024-07-14 04:48:02,920 Relaxation took 134.1s
2024-07-14 04:48:02,921 rank_005_alphafold2_multimer_v3_model_5_seed_000 pLDDT=27 pTM=0.184 ipTM=0.149
2024-07-14 04:48:07,407 Done