2024-07-14 04:21:09,986 Running colabfold 1.5.5 (a69c85fb950bb5a8936e440e12bdb7d2f358d2e3)
2024-07-14 04:21:10,316 Running on GPU
2024-07-14 04:21:20,662 Found 6 citations for tools or databases
2024-07-14 04:21:20,662 Query 1/1: ZMY10_ADT2 (length 738)
2024-07-14 04:21:21,080 Sleeping for 6s. Reason: PENDING
2024-07-14 04:21:27,501 Sleeping for 10s. Reason: RUNNING
2024-07-14 04:21:37,921 Sleeping for 10s. Reason: RUNNING
2024-07-14 04:21:48,337 Sleeping for 8s. Reason: RUNNING
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2024-07-14 04:22:05,176 Sleeping for 6s. Reason: RUNNING
2024-07-14 04:22:11,585 Sleeping for 5s. Reason: RUNNING
2024-07-14 04:22:17,005 Sleeping for 6s. Reason: RUNNING
2024-07-14 04:22:23,422 Sleeping for 7s. Reason: RUNNING
2024-07-14 04:22:30,843 Sleeping for 10s. Reason: RUNNING
2024-07-14 04:22:43,532 Sleeping for 8s. Reason: PENDING
2024-07-14 04:22:51,972 Sleeping for 7s. Reason: RUNNING
2024-07-14 04:22:59,403 Sleeping for 7s. Reason: RUNNING
2024-07-14 04:23:06,825 Sleeping for 7s. Reason: RUNNING
2024-07-14 04:23:14,237 Sleeping for 8s. Reason: RUNNING
2024-07-14 04:23:22,658 Sleeping for 10s. Reason: RUNNING
2024-07-14 04:23:33,455 Sleeping for 9s. Reason: RUNNING
2024-07-14 04:23:42,903 Sleeping for 10s. Reason: RUNNING
2024-07-14 04:23:53,325 Sleeping for 5s. Reason: RUNNING
2024-07-14 04:23:58,757 Sleeping for 5s. Reason: RUNNING
2024-07-14 04:24:09,080 Setting max_seq=508, max_extra_seq=2048
2024-07-14 04:27:27,475 alphafold2_multimer_v3_model_1_seed_000 recycle=0 pLDDT=71.9 pTM=0.524 ipTM=0.14
2024-07-14 04:27:38,472 alphafold2_multimer_v3_model_1_seed_000 recycle=1 pLDDT=75.1 pTM=0.542 ipTM=0.149 tol=11.2
2024-07-14 04:27:49,503 alphafold2_multimer_v3_model_1_seed_000 recycle=2 pLDDT=75.4 pTM=0.547 ipTM=0.157 tol=1.55
2024-07-14 04:28:00,540 alphafold2_multimer_v3_model_1_seed_000 recycle=3 pLDDT=75.8 pTM=0.549 ipTM=0.155 tol=1.17
2024-07-14 04:28:11,589 alphafold2_multimer_v3_model_1_seed_000 recycle=4 pLDDT=76.4 pTM=0.546 ipTM=0.151 tol=0.814
2024-07-14 04:28:22,650 alphafold2_multimer_v3_model_1_seed_000 recycle=5 pLDDT=76.3 pTM=0.547 ipTM=0.147 tol=0.422
2024-07-14 04:28:22,651 alphafold2_multimer_v3_model_1_seed_000 took 207.3s (5 recycles)
2024-07-14 04:28:34,068 alphafold2_multimer_v3_model_2_seed_000 recycle=0 pLDDT=73 pTM=0.534 ipTM=0.136
2024-07-14 04:28:45,150 alphafold2_multimer_v3_model_2_seed_000 recycle=1 pLDDT=75.1 pTM=0.54 ipTM=0.133 tol=10.8
2024-07-14 04:28:56,240 alphafold2_multimer_v3_model_2_seed_000 recycle=2 pLDDT=75.8 pTM=0.54 ipTM=0.13 tol=2.88
2024-07-14 04:29:07,344 alphafold2_multimer_v3_model_2_seed_000 recycle=3 pLDDT=75.9 pTM=0.538 ipTM=0.121 tol=1.31
2024-07-14 04:29:18,462 alphafold2_multimer_v3_model_2_seed_000 recycle=4 pLDDT=76.6 pTM=0.533 ipTM=0.12 tol=3.29
2024-07-14 04:29:29,576 alphafold2_multimer_v3_model_2_seed_000 recycle=5 pLDDT=76.7 pTM=0.533 ipTM=0.125 tol=4.3
2024-07-14 04:29:40,702 alphafold2_multimer_v3_model_2_seed_000 recycle=6 pLDDT=77 pTM=0.534 ipTM=0.126 tol=5.94
2024-07-14 04:29:51,840 alphafold2_multimer_v3_model_2_seed_000 recycle=7 pLDDT=76.9 pTM=0.535 ipTM=0.121 tol=1.73
2024-07-14 04:30:02,981 alphafold2_multimer_v3_model_2_seed_000 recycle=8 pLDDT=77 pTM=0.535 ipTM=0.119 tol=1.48
2024-07-14 04:30:14,128 alphafold2_multimer_v3_model_2_seed_000 recycle=9 pLDDT=77.4 pTM=0.54 ipTM=0.119 tol=2.16
2024-07-14 04:30:25,267 alphafold2_multimer_v3_model_2_seed_000 recycle=10 pLDDT=76.9 pTM=0.538 ipTM=0.119 tol=1.81
2024-07-14 04:30:36,418 alphafold2_multimer_v3_model_2_seed_000 recycle=11 pLDDT=76.7 pTM=0.538 ipTM=0.117 tol=1.5
2024-07-14 04:30:47,582 alphafold2_multimer_v3_model_2_seed_000 recycle=12 pLDDT=76.7 pTM=0.539 ipTM=0.118 tol=2.02
2024-07-14 04:30:58,725 alphafold2_multimer_v3_model_2_seed_000 recycle=13 pLDDT=76.2 pTM=0.538 ipTM=0.118 tol=0.653
2024-07-14 04:31:09,869 alphafold2_multimer_v3_model_2_seed_000 recycle=14 pLDDT=76.4 pTM=0.539 ipTM=0.119 tol=0.812
2024-07-14 04:31:21,020 alphafold2_multimer_v3_model_2_seed_000 recycle=15 pLDDT=76.6 pTM=0.539 ipTM=0.115 tol=1.57
2024-07-14 04:31:32,173 alphafold2_multimer_v3_model_2_seed_000 recycle=16 pLDDT=76.6 pTM=0.541 ipTM=0.118 tol=0.863
2024-07-14 04:31:43,328 alphafold2_multimer_v3_model_2_seed_000 recycle=17 pLDDT=76.8 pTM=0.541 ipTM=0.118 tol=1.14
2024-07-14 04:31:54,483 alphafold2_multimer_v3_model_2_seed_000 recycle=18 pLDDT=76.7 pTM=0.54 ipTM=0.114 tol=1.01
2024-07-14 04:32:05,642 alphafold2_multimer_v3_model_2_seed_000 recycle=19 pLDDT=76.6 pTM=0.541 ipTM=0.115 tol=1.43
2024-07-14 04:32:16,797 alphafold2_multimer_v3_model_2_seed_000 recycle=20 pLDDT=76.8 pTM=0.542 ipTM=0.114 tol=0.875
2024-07-14 04:32:27,950 alphafold2_multimer_v3_model_2_seed_000 recycle=21 pLDDT=76.6 pTM=0.541 ipTM=0.117 tol=0.892
2024-07-14 04:32:39,102 alphafold2_multimer_v3_model_2_seed_000 recycle=22 pLDDT=76.3 pTM=0.539 ipTM=0.115 tol=0.989
2024-07-14 04:32:50,259 alphafold2_multimer_v3_model_2_seed_000 recycle=23 pLDDT=77.1 pTM=0.542 ipTM=0.115 tol=0.8
2024-07-14 04:33:01,403 alphafold2_multimer_v3_model_2_seed_000 recycle=24 pLDDT=76.8 pTM=0.542 ipTM=0.117 tol=1.34
2024-07-14 04:33:12,550 alphafold2_multimer_v3_model_2_seed_000 recycle=25 pLDDT=76.4 pTM=0.542 ipTM=0.117 tol=1.29
2024-07-14 04:33:23,706 alphafold2_multimer_v3_model_2_seed_000 recycle=26 pLDDT=76.5 pTM=0.539 ipTM=0.116 tol=1.06
2024-07-14 04:33:34,861 alphafold2_multimer_v3_model_2_seed_000 recycle=27 pLDDT=77.3 pTM=0.544 ipTM=0.117 tol=0.993
2024-07-14 04:33:46,012 alphafold2_multimer_v3_model_2_seed_000 recycle=28 pLDDT=76.9 pTM=0.543 ipTM=0.117 tol=0.973
2024-07-14 04:33:57,170 alphafold2_multimer_v3_model_2_seed_000 recycle=29 pLDDT=77.2 pTM=0.545 ipTM=0.116 tol=1.16
2024-07-14 04:34:08,316 alphafold2_multimer_v3_model_2_seed_000 recycle=30 pLDDT=76.7 pTM=0.542 ipTM=0.118 tol=1.18
2024-07-14 04:34:08,317 alphafold2_multimer_v3_model_2_seed_000 took 345.3s (30 recycles)
2024-07-14 04:34:19,806 alphafold2_multimer_v3_model_3_seed_000 recycle=0 pLDDT=75 pTM=0.559 ipTM=0.166
2024-07-14 04:34:30,964 alphafold2_multimer_v3_model_3_seed_000 recycle=1 pLDDT=75.1 pTM=0.539 ipTM=0.132 tol=4.1
2024-07-14 04:34:42,125 alphafold2_multimer_v3_model_3_seed_000 recycle=2 pLDDT=75.4 pTM=0.541 ipTM=0.134 tol=1.9
2024-07-14 04:34:53,287 alphafold2_multimer_v3_model_3_seed_000 recycle=3 pLDDT=75.4 pTM=0.539 ipTM=0.127 tol=1.89
2024-07-14 04:35:04,463 alphafold2_multimer_v3_model_3_seed_000 recycle=4 pLDDT=75.6 pTM=0.534 ipTM=0.134 tol=9.17
2024-07-14 04:35:15,618 alphafold2_multimer_v3_model_3_seed_000 recycle=5 pLDDT=76.1 pTM=0.544 ipTM=0.131 tol=8.62
2024-07-14 04:35:26,778 alphafold2_multimer_v3_model_3_seed_000 recycle=6 pLDDT=76.2 pTM=0.543 ipTM=0.132 tol=1.22
2024-07-14 04:35:37,940 alphafold2_multimer_v3_model_3_seed_000 recycle=7 pLDDT=76 pTM=0.54 ipTM=0.129 tol=0.386
2024-07-14 04:35:37,941 alphafold2_multimer_v3_model_3_seed_000 took 89.3s (7 recycles)
2024-07-14 04:35:49,409 alphafold2_multimer_v3_model_4_seed_000 recycle=0 pLDDT=71.6 pTM=0.547 ipTM=0.157
2024-07-14 04:36:00,538 alphafold2_multimer_v3_model_4_seed_000 recycle=1 pLDDT=73.1 pTM=0.57 ipTM=0.215 tol=6.46
2024-07-14 04:36:11,680 alphafold2_multimer_v3_model_4_seed_000 recycle=2 pLDDT=74.6 pTM=0.56 ipTM=0.199 tol=1.85
2024-07-14 04:36:22,811 alphafold2_multimer_v3_model_4_seed_000 recycle=3 pLDDT=74.8 pTM=0.57 ipTM=0.216 tol=0.656
2024-07-14 04:36:33,944 alphafold2_multimer_v3_model_4_seed_000 recycle=4 pLDDT=75.5 pTM=0.563 ipTM=0.205 tol=0.714
2024-07-14 04:36:45,068 alphafold2_multimer_v3_model_4_seed_000 recycle=5 pLDDT=75 pTM=0.565 ipTM=0.212 tol=0.348
2024-07-14 04:36:45,069 alphafold2_multimer_v3_model_4_seed_000 took 66.8s (5 recycles)
2024-07-14 04:36:56,535 alphafold2_multimer_v3_model_5_seed_000 recycle=0 pLDDT=73.2 pTM=0.542 ipTM=0.152
2024-07-14 04:37:07,673 alphafold2_multimer_v3_model_5_seed_000 recycle=1 pLDDT=73.7 pTM=0.536 ipTM=0.142 tol=5.55
2024-07-14 04:37:18,825 alphafold2_multimer_v3_model_5_seed_000 recycle=2 pLDDT=75.3 pTM=0.538 ipTM=0.132 tol=2.74
2024-07-14 04:37:29,964 alphafold2_multimer_v3_model_5_seed_000 recycle=3 pLDDT=75.3 pTM=0.542 ipTM=0.136 tol=2.34
2024-07-14 04:37:41,105 alphafold2_multimer_v3_model_5_seed_000 recycle=4 pLDDT=76.3 pTM=0.545 ipTM=0.138 tol=1.5
2024-07-14 04:37:52,242 alphafold2_multimer_v3_model_5_seed_000 recycle=5 pLDDT=76 pTM=0.545 ipTM=0.14 tol=0.508
2024-07-14 04:38:03,379 alphafold2_multimer_v3_model_5_seed_000 recycle=6 pLDDT=76.4 pTM=0.545 ipTM=0.137 tol=0.502
2024-07-14 04:38:14,528 alphafold2_multimer_v3_model_5_seed_000 recycle=7 pLDDT=76.4 pTM=0.543 ipTM=0.135 tol=0.488
2024-07-14 04:38:14,528 alphafold2_multimer_v3_model_5_seed_000 took 89.1s (7 recycles)
2024-07-14 04:38:14,870 reranking models by 'multimer' metric
2024-07-14 04:38:34,457 Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
2024-07-14 04:39:52,577 Relaxation took 97.7s
2024-07-14 04:39:52,578 rank_001_alphafold2_multimer_v3_model_4_seed_000 pLDDT=75 pTM=0.565 ipTM=0.212
2024-07-14 04:40:43,708 Relaxation took 51.1s
2024-07-14 04:40:43,708 rank_002_alphafold2_multimer_v3_model_1_seed_000 pLDDT=76.3 pTM=0.547 ipTM=0.147
2024-07-14 04:41:18,999 Relaxation took 35.3s
2024-07-14 04:41:18,999 rank_003_alphafold2_multimer_v3_model_5_seed_000 pLDDT=76.4 pTM=0.543 ipTM=0.135
2024-07-14 04:42:11,264 Relaxation took 52.3s
2024-07-14 04:42:11,264 rank_004_alphafold2_multimer_v3_model_3_seed_000 pLDDT=76 pTM=0.54 ipTM=0.129
2024-07-14 04:45:02,189 Relaxation took 170.9s
2024-07-14 04:45:02,189 rank_005_alphafold2_multimer_v3_model_2_seed_000 pLDDT=76.7 pTM=0.542 ipTM=0.118
2024-07-14 04:45:06,475 Done