********************************************************************* * LD Score Regression (LDSC) * Version 1.0.0 * (C) 2014-2015 Brendan Bulik-Sullivan and Hilary Finucane * Broad Institute of MIT and Harvard / MIT Department of Mathematics * GNU General Public License v3 ********************************************************************* Call: ./ldsc.py \ --print-snps hapmap3_snps/hm.11.snp \ --ld-wind-cm 1.0 \ --out 1000G_Phase3_baseline_v1.1_rerun/baseline.11 \ --bfile 1000G_EUR_Phase3_plink/1000G.EUR.QC.11 \ --annot 1000G_Phase3_baseline_v1.1/baseline.11.annot.gz \ --l2 Beginning analysis at Tue Oct 17 16:41:15 2017 Read list of 493922 SNPs from 1000G_EUR_Phase3_plink/1000G.EUR.QC.11.bim Read 53 annotations for 493922 SNPs from 1000G_Phase3_baseline_v1.1/baseline.11.annot.gz Read list of 489 individuals from 1000G_EUR_Phase3_plink/1000G.EUR.QC.11.fam Reading genotypes from 1000G_EUR_Phase3_plink/1000G.EUR.QC.11.bed Estimating LD Score. Reading list of 71092 SNPs for which to print LD Scores from hapmap3_snps/hm.11.snp After merging with --print-snps, LD Scores for 61027 SNPs will be printed. Writing LD Scores for 61027 SNPs to 1000G_Phase3_baseline_v1.1_rerun/baseline.11.l2.ldscore.gz Summary of LD Scores in 1000G_Phase3_baseline_v1.1_rerun/baseline.11.l2.ldscore.gz MAF baseL2 Coding_UCSC.bedL2 Coding_UCSC.extend.500.bedL2 Conserved_LindbladToh.bedL2 Conserved_LindbladToh.extend.500.bedL2 CTCF_Hoffman.bedL2 CTCF_Hoffman.extend.500.bedL2 DGF_ENCODE.bedL2 DGF_ENCODE.extend.500.bedL2 DHS_peaks_Trynka.bedL2 DHS_Trynka.bedL2 DHS_Trynka.extend.500.bedL2 Enhancer_Andersson.bedL2 Enhancer_Andersson.extend.500.bedL2 Enhancer_Hoffman.bedL2 Enhancer_Hoffman.extend.500.bedL2 FetalDHS_Trynka.bedL2 FetalDHS_Trynka.extend.500.bedL2 H3K27ac_Hnisz.bedL2 H3K27ac_Hnisz.extend.500.bedL2 H3K27ac_PGC2.bedL2 H3K27ac_PGC2.extend.500.bedL2 H3K4me1_peaks_Trynka.bedL2 H3K4me1_Trynka.bedL2 H3K4me1_Trynka.extend.500.bedL2 H3K4me3_peaks_Trynka.bedL2 H3K4me3_Trynka.bedL2 H3K4me3_Trynka.extend.500.bedL2 H3K9ac_peaks_Trynka.bedL2 H3K9ac_Trynka.bedL2 H3K9ac_Trynka.extend.500.bedL2 Intron_UCSC.bedL2 Intron_UCSC.extend.500.bedL2 PromoterFlanking_Hoffman.bedL2 PromoterFlanking_Hoffman.extend.500.bedL2 Promoter_UCSC.bedL2 \ mean 0.2389 164.8367 2.7440 10.6252 3.4527 42.8655 3.0364 9.1534 16.3481 66.3185 13.0286 19.5474 60.0549 0.4074 1.8688 5.1199 10.7850 9.6167 32.7352 46.3522 50.3321 35.2214 43.6409 20.3185 50.9821 73.3557 7.4522 25.0723 44.1348 4.8248 15.3874 27.8653 54.3809 55.8548 1.0638 4.1042 9.3674 std 0.1430 360.5874 6.1049 18.5709 4.5785 47.9598 3.6021 11.0766 15.8916 62.7209 10.7694 15.7186 51.4773 0.7795 2.6925 7.0087 14.0775 8.0071 26.8047 51.9933 55.2186 46.4326 56.1162 19.7222 47.2820 66.1329 23.3460 80.9779 126.6908 6.8707 19.8970 33.3526 71.4688 72.9020 1.6689 5.5144 23.9726 min 0.0051 -23.7986 -0.2562 -0.5528 -0.1835 -0.7951 -0.1612 -0.2226 -0.6053 -2.4425 -0.4005 -0.3722 -1.4040 -0.0568 -0.1767 -0.3109 -0.4166 -0.2442 -0.6100 -1.3938 -1.3239 -2.1506 -2.9251 -0.7450 -0.9487 -1.7539 -2.1416 -6.9830 -9.5911 -0.2776 -0.3347 -0.5278 -3.0074 -3.0182 -0.0886 -0.3725 -1.1070 25% 0.1145 51.9372 0.0715 0.4515 0.7945 15.0042 0.8191 2.8300 6.3852 28.4809 5.8153 8.9599 27.5852 0.0174 0.2012 0.6989 1.7908 4.2334 15.2091 12.5935 15.2352 9.5593 12.5495 7.4899 20.6529 31.3852 1.2210 4.3466 10.1909 0.8128 3.0907 7.1176 6.6613 6.9885 0.0742 0.5272 0.3636 50% 0.2301 93.2656 0.7176 3.6371 2.1453 30.6347 1.9288 5.9936 11.6931 49.3325 10.1174 15.4297 46.3059 0.0972 0.8202 2.4738 5.6595 7.4891 25.9081 30.3780 33.6418 21.8046 27.6361 14.3981 37.2957 54.6478 2.8027 9.2728 19.4914 2.3769 8.3905 16.8616 30.1072 31.2409 0.3679 1.9747 2.5037 75% 0.3609 162.9679 2.9828 13.2309 4.4011 55.0709 3.9039 11.4649 20.8867 83.8993 16.8963 25.2026 76.2367 0.4550 2.4490 6.7361 14.1682 12.4959 42.1536 60.9721 65.0360 42.3936 52.5925 26.0176 65.1436 93.2882 5.8175 19.3722 36.8635 5.7638 18.9838 34.9130 71.0590 73.2484 1.3290 5.4536 9.5618 max 0.5000 5090.0871 95.4834 206.5118 49.1799 468.5049 31.9356 106.6871 135.5809 556.1568 89.0113 126.7285 437.1372 8.7217 26.4459 59.5753 112.5815 63.4357 232.6677 423.8578 471.1924 437.5230 520.6290 147.9345 393.6714 565.5088 337.7350 1109.2576 1789.3865 59.3585 149.1769 273.1791 458.0270 459.0154 17.0074 42.3202 415.4473 Promoter_UCSC.extend.500.bedL2 Repressed_Hoffman.bedL2 Repressed_Hoffman.extend.500.bedL2 SuperEnhancer_Hnisz.bedL2 SuperEnhancer_Hnisz.extend.500.bedL2 TFBS_ENCODE.bedL2 TFBS_ENCODE.extend.500.bedL2 Transcribed_Hoffman.bedL2 Transcribed_Hoffman.extend.500.bedL2 TSS_Hoffman.bedL2 TSS_Hoffman.extend.500.bedL2 UTR_3_UCSC.bedL2 UTR_3_UCSC.extend.500.bedL2 UTR_5_UCSC.bedL2 UTR_5_UCSC.extend.500.bedL2 WeakEnhancer_Hoffman.bedL2 WeakEnhancer_Hoffman.extend.500.bedL2 mean 11.4631 75.9176 114.4625 20.6547 21.0287 15.1913 40.4717 55.2575 125.1813 2.1139 3.9971 1.4053 3.7300 0.7754 4.0550 2.8580 11.7230 std 28.9780 170.7213 243.9690 32.6777 33.0586 15.0837 38.6338 85.7783 224.9638 3.9042 6.8453 2.1937 5.9002 1.7859 7.0760 3.4419 12.8981 min -1.3297 -9.0249 -12.5325 -1.4245 -1.4283 -0.4792 -0.8818 -4.8829 -12.9536 -0.2400 -0.4002 -0.1776 -0.3812 -0.2795 -0.3393 -0.2759 -0.3009 25% 0.4641 16.9860 29.5431 0.5784 0.6045 5.3739 16.2486 15.2144 39.5408 0.0664 0.1894 0.0402 0.1265 0.0158 0.1656 0.6306 3.2857 50% 3.1568 38.0892 60.9128 6.7728 7.0154 10.4105 29.2864 30.7984 74.7952 0.5227 1.2385 0.3974 1.1596 0.1412 1.1694 1.6808 7.6522 75% 11.8278 77.3107 118.1026 27.5467 28.1076 19.7009 51.6294 61.2964 135.7176 2.2733 4.5040 1.8821 4.8344 0.7976 4.7046 3.7102 15.3393 max 499.1589 2537.7456 3527.9523 294.8341 297.1984 125.2847 349.5758 961.4910 3082.5703 37.8979 64.5208 24.3308 51.7070 83.4946 84.3464 26.6137 101.5503 MAF/LD Score Correlation Matrix MAF baseL2 Coding_UCSC.bedL2 Coding_UCSC.extend.500.bedL2 Conserved_LindbladToh.bedL2 Conserved_LindbladToh.extend.500.bedL2 CTCF_Hoffman.bedL2 CTCF_Hoffman.extend.500.bedL2 DGF_ENCODE.bedL2 DGF_ENCODE.extend.500.bedL2 DHS_peaks_Trynka.bedL2 DHS_Trynka.bedL2 DHS_Trynka.extend.500.bedL2 Enhancer_Andersson.bedL2 Enhancer_Andersson.extend.500.bedL2 Enhancer_Hoffman.bedL2 Enhancer_Hoffman.extend.500.bedL2 FetalDHS_Trynka.bedL2 FetalDHS_Trynka.extend.500.bedL2 H3K27ac_Hnisz.bedL2 H3K27ac_Hnisz.extend.500.bedL2 H3K27ac_PGC2.bedL2 H3K27ac_PGC2.extend.500.bedL2 H3K4me1_peaks_Trynka.bedL2 H3K4me1_Trynka.bedL2 H3K4me1_Trynka.extend.500.bedL2 H3K4me3_peaks_Trynka.bedL2 H3K4me3_Trynka.bedL2 H3K4me3_Trynka.extend.500.bedL2 H3K9ac_peaks_Trynka.bedL2 H3K9ac_Trynka.bedL2 H3K9ac_Trynka.extend.500.bedL2 Intron_UCSC.bedL2 Intron_UCSC.extend.500.bedL2 PromoterFlanking_Hoffman.bedL2 PromoterFlanking_Hoffman.extend.500.bedL2 \ MAF 1.0000 0.0141 0.0092 0.0334 0.0633 0.0798 0.0902 0.0849 0.1112 0.1123 0.1324 0.1386 0.1210 0.0853 0.1065 0.0766 0.0856 0.1228 0.1265 0.0901 0.0914 0.0642 0.0691 0.1102 0.1139 0.1139 -0.0020 0.0019 0.0037 0.0657 0.0840 0.0887 0.0908 0.0903 0.0589 0.0781 baseL2 0.0141 1.0000 0.8274 0.7569 0.7536 0.7909 0.7119 0.8071 0.6805 0.8036 0.6110 0.6222 0.7637 0.3000 0.3712 0.3600 0.3848 0.5368 0.6500 0.5518 0.5885 0.7682 0.7760 0.4689 0.5644 0.6774 0.9576 0.9553 0.9683 0.3929 0.3827 0.4611 0.4871 0.5035 0.2762 0.3408 Coding_UCSC.bedL2 0.0092 0.8274 1.0000 0.9069 0.7538 0.7283 0.7339 0.7805 0.7029 0.7538 0.6092 0.6067 0.6946 0.3126 0.4156 0.4698 0.4991 0.5528 0.6134 0.5919 0.6130 0.7314 0.7321 0.5462 0.5988 0.6609 0.8063 0.7900 0.8061 0.5487 0.5484 0.5862 0.4422 0.4655 0.4034 0.4920 Coding_UCSC.extend.500.bedL2 0.0334 0.7569 0.9069 1.0000 0.7565 0.7915 0.7800 0.8236 0.8200 0.8292 0.7302 0.7185 0.7733 0.3960 0.4962 0.6183 0.6644 0.6803 0.7187 0.7333 0.7507 0.8234 0.8266 0.7101 0.7641 0.7947 0.7570 0.7462 0.7593 0.7173 0.7192 0.7679 0.6030 0.6258 0.5906 0.6737 Conserved_LindbladToh.bedL2 0.0633 0.7536 0.7538 0.7565 1.0000 0.9153 0.6759 0.7450 0.7283 0.7851 0.7206 0.7158 0.7775 0.3723 0.4176 0.4980 0.5254 0.6783 0.7359 0.6498 0.6733 0.7481 0.7516 0.6400 0.6994 0.7536 0.7169 0.7070 0.7234 0.5659 0.5647 0.6229 0.5712 0.5860 0.4094 0.4748 Conserved_LindbladToh.extend.500.bedL2 0.0798 0.7909 0.7283 0.7915 0.9153 1.0000 0.7424 0.8091 0.8343 0.8955 0.8358 0.8417 0.8977 0.4298 0.4887 0.5893 0.6214 0.7827 0.8520 0.7636 0.7881 0.8469 0.8548 0.7589 0.8239 0.8830 0.7388 0.7312 0.7523 0.6192 0.6289 0.7041 0.7096 0.7221 0.5057 0.5649 CTCF_Hoffman.bedL2 0.0902 0.7119 0.7339 0.7800 0.6759 0.7424 1.0000 0.9457 0.8242 0.8353 0.7591 0.7516 0.7901 0.3933 0.5004 0.6238 0.6529 0.7185 0.7582 0.7302 0.7499 0.7899 0.7978 0.7173 0.7573 0.7937 0.6913 0.6854 0.7014 0.6770 0.6776 0.7257 0.5538 0.5709 0.4980 0.6051 CTCF_Hoffman.extend.500.bedL2 0.0849 0.8071 0.7805 0.8236 0.7450 0.8091 0.9457 1.0000 0.8704 0.8935 0.7936 0.7880 0.8444 0.4333 0.5300 0.6364 0.6715 0.7415 0.8018 0.7723 0.7959 0.8584 0.8664 0.7419 0.7942 0.8386 0.7934 0.7900 0.8050 0.7002 0.6969 0.7545 0.5966 0.6146 0.5046 0.6129 DGF_ENCODE.bedL2 0.1112 0.6805 0.7029 0.8200 0.7283 0.8343 0.8242 0.8704 1.0000 0.9559 0.9449 0.9395 0.9249 0.5383 0.6423 0.7943 0.8362 0.8974 0.9186 0.9101 0.9246 0.9202 0.9265 0.9177 0.9464 0.9518 0.6767 0.6739 0.6918 0.8214 0.8395 0.8895 0.6905 0.7068 0.6444 0.7457 DGF_ENCODE.extend.500.bedL2 0.1123 0.8036 0.7538 0.8292 0.7851 0.8955 0.8353 0.8935 0.9559 1.0000 0.9248 0.9347 0.9787 0.4722 0.5876 0.6870 0.7311 0.8589 0.9261 0.8518 0.8777 0.9102 0.9225 0.8398 0.9088 0.9636 0.7483 0.7467 0.7702 0.6961 0.7130 0.7874 0.7125 0.7270 0.5776 0.6669 DHS_peaks_Trynka.bedL2 0.1324 0.6110 0.6092 0.7302 0.7206 0.8358 0.7591 0.7936 0.9449 0.9248 1.0000 0.9872 0.9438 0.5212 0.6128 0.7560 0.7943 0.9551 0.9595 0.8871 0.9013 0.8672 0.8753 0.9104 0.9412 0.9488 0.5830 0.5766 0.5993 0.7598 0.7854 0.8386 0.6903 0.7024 0.6164 0.7040 DHS_Trynka.bedL2 0.1386 0.6222 0.6067 0.7185 0.7158 0.8417 0.7516 0.7880 0.9395 0.9347 0.9872 1.0000 0.9606 0.5183 0.6142 0.7361 0.7747 0.9483 0.9662 0.8736 0.8900 0.8613 0.8707 0.8976 0.9345 0.9530 0.5791 0.5733 0.5981 0.7269 0.7538 0.8123 0.6962 0.7075 0.5956 0.6801 DHS_Trynka.extend.500.bedL2 0.1210 0.7637 0.6946 0.7733 0.7775 0.8977 0.7901 0.8444 0.9249 0.9787 0.9438 0.9606 1.0000 0.4657 0.5767 0.6586 0.7019 0.8848 0.9565 0.8298 0.8559 0.8772 0.8898 0.8303 0.9010 0.9606 0.6884 0.6840 0.7118 0.6555 0.6753 0.7518 0.7171 0.7291 0.5558 0.6375 Enhancer_Andersson.bedL2 0.0853 0.3000 0.3126 0.3960 0.3723 0.4298 0.3933 0.4333 0.5383 0.4722 0.5212 0.5183 0.4657 1.0000 0.8379 0.5903 0.5793 0.5199 0.5064 0.5441 0.5450 0.5430 0.5390 0.5419 0.5297 0.4968 0.3435 0.3403 0.3436 0.5164 0.5364 0.5407 0.3274 0.3357 0.3232 0.4039 Enhancer_Andersson.extend.500.bedL2 0.1065 0.3712 0.4156 0.4962 0.4176 0.4887 0.5004 0.5300 0.6423 0.5876 0.6128 0.6142 0.5767 0.8379 1.0000 0.6714 0.6695 0.6002 0.5994 0.6329 0.6350 0.6327 0.6298 0.6316 0.6248 0.5996 0.3993 0.3934 0.4025 0.5812 0.6106 0.6188 0.4066 0.4164 0.3849 0.4858 Enhancer_Hoffman.bedL2 0.0766 0.3600 0.4698 0.6183 0.4980 0.5893 0.6238 0.6364 0.7943 0.6870 0.7560 0.7361 0.6586 0.5903 0.6714 1.0000 0.9770 0.7530 0.7145 0.8198 0.8129 0.7705 0.7622 0.8351 0.8064 0.7400 0.4184 0.4103 0.4193 0.8191 0.8394 0.8401 0.5145 0.5286 0.5959 0.7175 Enhancer_Hoffman.extend.500.bedL2 0.0856 0.3848 0.4991 0.6644 0.5254 0.6214 0.6529 0.6715 0.8362 0.7311 0.7943 0.7747 0.7019 0.5793 0.6695 0.9770 1.0000 0.7907 0.7576 0.8578 0.8529 0.8073 0.8010 0.8748 0.8528 0.7880 0.4391 0.4332 0.4435 0.8536 0.8758 0.8844 0.5517 0.5666 0.6419 0.7650 FetalDHS_Trynka.bedL2 0.1228 0.5368 0.5528 0.6803 0.6783 0.7827 0.7185 0.7415 0.8974 0.8589 0.9551 0.9483 0.8848 0.5199 0.6002 0.7530 0.7907 1.0000 0.9590 0.8743 0.8828 0.8430 0.8470 0.9064 0.9228 0.9080 0.5306 0.5228 0.5428 0.7725 0.7933 0.8374 0.6385 0.6506 0.5930 0.6897 FetalDHS_Trynka.extend.500.bedL2 0.1265 0.6500 0.6134 0.7187 0.7359 0.8520 0.7582 0.8018 0.9186 0.9261 0.9595 0.9662 0.9565 0.5064 0.5994 0.7145 0.7576 0.9590 1.0000 0.8735 0.8896 0.8755 0.8827 0.8890 0.9314 0.9486 0.6087 0.6028 0.6277 0.7248 0.7455 0.8067 0.6825 0.6943 0.5672 0.6617 H3K27ac_Hnisz.bedL2 0.0901 0.5518 0.5919 0.7333 0.6498 0.7636 0.7302 0.7723 0.9101 0.8518 0.8871 0.8736 0.8298 0.5441 0.6329 0.8198 0.8578 0.8743 0.8735 1.0000 0.9976 0.9196 0.9217 0.9340 0.9457 0.9071 0.5818 0.5785 0.5951 0.8267 0.8555 0.9028 0.6507 0.6647 0.6388 0.7371 H3K27ac_Hnisz.extend.500.bedL2 0.0914 0.5885 0.6130 0.7507 0.6733 0.7881 0.7499 0.7959 0.9246 0.8777 0.9013 0.8900 0.8559 0.5450 0.6350 0.8129 0.8529 0.8828 0.8896 0.9976 1.0000 0.9319 0.9360 0.9325 0.9536 0.9260 0.6095 0.6071 0.6245 0.8194 0.8471 0.8993 0.6655 0.6798 0.6382 0.7360 H3K27ac_PGC2.bedL2 0.0642 0.7682 0.7314 0.8234 0.7481 0.8469 0.7899 0.8584 0.9202 0.9102 0.8672 0.8613 0.8772 0.5430 0.6327 0.7705 0.8073 0.8430 0.8755 0.9196 0.9319 1.0000 0.9976 0.8741 0.9062 0.9079 0.7968 0.7917 0.8068 0.7836 0.7947 0.8563 0.6612 0.6777 0.5882 0.6783 H3K27ac_PGC2.extend.500.bedL2 0.0691 0.7760 0.7321 0.8266 0.7516 0.8548 0.7978 0.8664 0.9265 0.9225 0.8753 0.8707 0.8898 0.5390 0.6298 0.7622 0.8010 0.8470 0.8827 0.9217 0.9360 0.9976 1.0000 0.8743 0.9132 0.9204 0.7979 0.7941 0.8098 0.7757 0.7877 0.8534 0.6724 0.6888 0.5905 0.6808 H3K4me1_peaks_Trynka.bedL2 0.1102 0.4689 0.5462 0.7101 0.6400 0.7589 0.7173 0.7419 0.9177 0.8398 0.9104 0.8976 0.8303 0.5419 0.6316 0.8351 0.8748 0.9064 0.8890 0.9340 0.9325 0.8741 0.8743 1.0000 0.9693 0.9163 0.4999 0.4910 0.5088 0.8793 0.9002 0.9343 0.6940 0.7060 0.6881 0.7791 H3K4me1_Trynka.bedL2 0.1139 0.5644 0.5988 0.7641 0.6994 0.8239 0.7573 0.7942 0.9464 0.9088 0.9412 0.9345 0.9010 0.5297 0.6248 0.8064 0.8528 0.9228 0.9314 0.9457 0.9536 0.9062 0.9132 0.9693 1.0000 0.9757 0.5630 0.5596 0.5800 0.8341 0.8591 0.9143 0.7361 0.7486 0.6851 0.7803 H3K4me1_Trynka.extend.500.bedL2 0.1139 0.6774 0.6609 0.7947 0.7536 0.8830 0.7937 0.8386 0.9518 0.9636 0.9488 0.9530 0.9606 0.4968 0.5996 0.7400 0.7880 0.9080 0.9486 0.9071 0.9260 0.9079 0.9204 0.9163 0.9757 1.0000 0.6361 0.6343 0.6582 0.7560 0.7779 0.8495 0.7592 0.7717 0.6465 0.7339 H3K4me3_peaks_Trynka.bedL2 -0.0020 0.9576 0.8063 0.7570 0.7169 0.7388 0.6913 0.7934 0.6767 0.7483 0.5830 0.5791 0.6884 0.3435 0.3993 0.4184 0.4391 0.5306 0.6087 0.5818 0.6095 0.7968 0.7979 0.4999 0.5630 0.6361 1.0000 0.9956 0.9961 0.4866 0.4705 0.5305 0.4489 0.4678 0.3023 0.3798 H3K4me3_Trynka.bedL2 0.0019 0.9553 0.7900 0.7462 0.7070 0.7312 0.6854 0.7900 0.6739 0.7467 0.5766 0.5733 0.6840 0.3403 0.3934 0.4103 0.4332 0.5228 0.6028 0.5785 0.6071 0.7917 0.7941 0.4910 0.5596 0.6343 0.9956 1.0000 0.9974 0.4788 0.4644 0.5249 0.4526 0.4713 0.2957 0.3752 H3K4me3_Trynka.extend.500.bedL2 0.0037 0.9683 0.8061 0.7593 0.7234 0.7523 0.7014 0.8050 0.6918 0.7702 0.5993 0.5981 0.7118 0.3436 0.4025 0.4193 0.4435 0.5428 0.6277 0.5951 0.6245 0.8068 0.8098 0.5088 0.5800 0.6582 0.9961 0.9974 1.0000 0.4805 0.4687 0.5340 0.4689 0.4874 0.3039 0.3809 H3K9ac_peaks_Trynka.bedL2 0.0657 0.3929 0.5487 0.7173 0.5659 0.6192 0.6770 0.7002 0.8214 0.6961 0.7598 0.7269 0.6555 0.5164 0.5812 0.8191 0.8536 0.7725 0.7248 0.8267 0.8194 0.7836 0.7757 0.8793 0.8341 0.7560 0.4866 0.4788 0.4805 1.0000 0.9719 0.9563 0.5423 0.5601 0.6655 0.7832 H3K9ac_Trynka.bedL2 0.0840 0.3827 0.5484 0.7192 0.5647 0.6289 0.6776 0.6969 0.8395 0.7130 0.7854 0.7538 0.6753 0.5364 0.6106 0.8394 0.8758 0.7933 0.7455 0.8555 0.8471 0.7947 0.7877 0.9002 0.8591 0.7779 0.4705 0.4644 0.4687 0.9719 1.0000 0.9820 0.5654 0.5827 0.6693 0.7905 H3K9ac_Trynka.extend.500.bedL2 0.0887 0.4611 0.5862 0.7679 0.6229 0.7041 0.7257 0.7545 0.8895 0.7874 0.8386 0.8123 0.7518 0.5407 0.6188 0.8401 0.8844 0.8374 0.8067 0.9028 0.8993 0.8563 0.8534 0.9343 0.9143 0.8495 0.5305 0.5249 0.5340 0.9563 0.9820 1.0000 0.6278 0.6446 0.6943 0.8057 Intron_UCSC.bedL2 0.0908 0.4871 0.4422 0.6030 0.5712 0.7096 0.5538 0.5966 0.6905 0.7125 0.6903 0.6962 0.7171 0.3274 0.4066 0.5145 0.5517 0.6385 0.6825 0.6507 0.6655 0.6612 0.6724 0.6940 0.7361 0.7592 0.4489 0.4526 0.4689 0.5423 0.5654 0.6278 1.0000 0.9994 0.5092 0.5462 Intron_UCSC.extend.500.bedL2 0.0903 0.5035 0.4655 0.6258 0.5860 0.7221 0.5709 0.6146 0.7068 0.7270 0.7024 0.7075 0.7291 0.3357 0.4164 0.5286 0.5666 0.6506 0.6943 0.6647 0.6798 0.6777 0.6888 0.7060 0.7486 0.7717 0.4678 0.4713 0.4874 0.5601 0.5827 0.6446 0.9994 1.0000 0.5201 0.5613 PromoterFlanking_Hoffman.bedL2 0.0589 0.2762 0.4034 0.5906 0.4094 0.5057 0.4980 0.5046 0.6444 0.5776 0.6164 0.5956 0.5558 0.3232 0.3849 0.5959 0.6419 0.5930 0.5672 0.6388 0.6382 0.5882 0.5905 0.6881 0.6851 0.6465 0.3023 0.2957 0.3039 0.6655 0.6693 0.6943 0.5092 0.5201 1.0000 0.8770 PromoterFlanking_Hoffman.extend.500.bedL2 0.0781 0.3408 0.4920 0.6737 0.4748 0.5649 0.6051 0.6129 0.7457 0.6669 0.7040 0.6801 0.6375 0.4039 0.4858 0.7175 0.7650 0.6897 0.6617 0.7371 0.7360 0.6783 0.6808 0.7791 0.7803 0.7339 0.3798 0.3752 0.3809 0.7832 0.7905 0.8057 0.5462 0.5613 0.8770 1.0000 Promoter_UCSC.bedL2 0.0012 0.8653 0.9465 0.8548 0.7405 0.7201 0.7287 0.7734 0.6668 0.7431 0.5804 0.5772 0.6853 0.2756 0.3863 0.4239 0.4499 0.5174 0.5900 0.5503 0.5742 0.7119 0.7129 0.4971 0.5553 0.6319 0.8305 0.8126 0.8297 0.4834 0.4817 0.5245 0.3986 0.4200 0.3624 0.4461 Promoter_UCSC.extend.500.bedL2 0.0018 0.8665 0.9474 0.8577 0.7420 0.7226 0.7330 0.7780 0.6713 0.7471 0.5838 0.5807 0.6891 0.2789 0.3906 0.4276 0.4541 0.5210 0.5940 0.5548 0.5789 0.7158 0.7170 0.5016 0.5602 0.6368 0.8309 0.8137 0.8308 0.4883 0.4864 0.5295 0.4026 0.4241 0.3648 0.4493 Repressed_Hoffman.bedL2 0.0102 0.9688 0.7902 0.6652 0.7022 0.7214 0.6334 0.7163 0.5593 0.7195 0.5126 0.5324 0.6967 0.2085 0.2806 0.2084 0.2259 0.4341 0.5648 0.4077 0.4479 0.6346 0.6437 0.3249 0.4318 0.5715 0.8815 0.8761 0.8934 0.2350 0.2225 0.2982 0.3872 0.4016 0.1611 0.2126 Repressed_Hoffman.extend.500.bedL2 0.0146 0.9767 0.7925 0.6779 0.7145 0.7403 0.6515 0.7369 0.5854 0.7429 0.5385 0.5584 0.7196 0.2275 0.3010 0.2347 0.2543 0.4583 0.5889 0.4362 0.4769 0.6594 0.6694 0.3536 0.4609 0.5990 0.8911 0.8868 0.9043 0.2582 0.2473 0.3251 0.4147 0.4290 0.1794 0.2350 SuperEnhancer_Hnisz.bedL2 0.0458 0.3693 0.4341 0.5635 0.4857 0.5703 0.5450 0.5772 0.7174 0.6171 0.6906 0.6620 0.5948 0.5141 0.5759 0.7657 0.7804 0.7052 0.6792 0.8549 0.8351 0.7688 0.7513 0.7925 0.7586 0.6777 0.4424 0.4346 0.4425 0.7609 0.7881 0.7974 0.4937 0.5058 0.4878 0.5911 SuperEnhancer_Hnisz.extend.500.bedL2 0.0462 0.3697 0.4353 0.5652 0.4864 0.5711 0.5470 0.5788 0.7189 0.6187 0.6921 0.6633 0.5961 0.5144 0.5769 0.7674 0.7822 0.7061 0.6802 0.8565 0.8368 0.7698 0.7525 0.7937 0.7605 0.6796 0.4426 0.4349 0.4429 0.7624 0.7896 0.7990 0.4946 0.5068 0.4910 0.5944 TFBS_ENCODE.bedL2 0.1093 0.5769 0.6545 0.7913 0.6882 0.7839 0.8092 0.8321 0.9490 0.8891 0.9121 0.9033 0.8639 0.5505 0.6472 0.8515 0.8882 0.8889 0.8845 0.9035 0.9111 0.8820 0.8851 0.9173 0.9311 0.9120 0.5948 0.5899 0.6036 0.8609 0.8782 0.9089 0.6475 0.6646 0.6701 0.7943 TFBS_ENCODE.extend.500.bedL2 0.1111 0.7147 0.7119 0.8173 0.7533 0.8604 0.8384 0.8869 0.9663 0.9664 0.9360 0.9392 0.9473 0.5250 0.6327 0.7818 0.8248 0.8931 0.9313 0.8973 0.9160 0.9201 0.9290 0.8889 0.9377 0.9598 0.6886 0.6867 0.7070 0.7769 0.7954 0.8545 0.6855 0.7013 0.6256 0.7354 Transcribed_Hoffman.bedL2 0.0348 0.9071 0.8360 0.8636 0.8109 0.8883 0.7831 0.8609 0.8477 0.9199 0.7814 0.7890 0.8824 0.3827 0.4720 0.5739 0.6171 0.7153 0.7984 0.7436 0.7723 0.8831 0.8911 0.7106 0.7857 0.8592 0.8646 0.8601 0.8802 0.6116 0.6181 0.6957 0.6783 0.6941 0.5006 0.5686 Transcribed_Hoffman.extend.500.bedL2 0.0235 0.9891 0.8435 0.7829 0.7836 0.8305 0.7342 0.8206 0.7192 0.8465 0.6624 0.6776 0.8170 0.3087 0.3904 0.3916 0.4207 0.5850 0.7013 0.5827 0.6200 0.7810 0.7902 0.5157 0.6138 0.7302 0.9189 0.9140 0.9332 0.4183 0.4134 0.4935 0.5359 0.5516 0.3180 0.3837 TSS_Hoffman.bedL2 0.0565 0.2454 0.4565 0.6206 0.4162 0.4394 0.5265 0.5303 0.6538 0.5180 0.5913 0.5531 0.4748 0.4091 0.4740 0.7129 0.7505 0.6102 0.5354 0.6423 0.6326 0.5899 0.5813 0.6856 0.6475 0.5726 0.3493 0.3442 0.3349 0.8285 0.8212 0.7838 0.3776 0.3976 0.6302 0.7721 TSS_Hoffman.extend.500.bedL2 0.0651 0.2934 0.4885 0.6592 0.4501 0.4840 0.5841 0.5931 0.7069 0.5727 0.6340 0.5987 0.5285 0.4572 0.5259 0.7670 0.8072 0.6517 0.5903 0.6956 0.6874 0.6521 0.6429 0.7361 0.7010 0.6259 0.3949 0.3901 0.3830 0.8666 0.8623 0.8330 0.4180 0.4381 0.6669 0.8176 UTR_3_UCSC.bedL2 0.0800 0.2544 0.5263 0.6293 0.3800 0.4468 0.5181 0.5132 0.6156 0.5267 0.5598 0.5444 0.4919 0.3274 0.4248 0.5978 0.6320 0.5573 0.5247 0.6115 0.6078 0.5555 0.5579 0.6478 0.6359 0.5878 0.3088 0.3062 0.3080 0.6800 0.6921 0.6895 0.4643 0.4797 0.5656 0.6645 UTR_3_UCSC.extend.500.bedL2 0.0768 0.4126 0.6125 0.7541 0.4958 0.5676 0.6449 0.6571 0.7409 0.6700 0.6600 0.6449 0.6212 0.3792 0.4832 0.6458 0.6955 0.6431 0.6341 0.7146 0.7162 0.6886 0.6927 0.7271 0.7364 0.7033 0.4556 0.4580 0.4617 0.7437 0.7587 0.7762 0.5506 0.5686 0.6127 0.7190 UTR_5_UCSC.bedL2 0.0202 0.4532 0.5963 0.6279 0.4870 0.5032 0.4909 0.5102 0.5250 0.5144 0.4721 0.4608 0.4782 0.2726 0.3220 0.4162 0.4429 0.4569 0.4627 0.4835 0.4903 0.5236 0.5229 0.4764 0.4974 0.5045 0.4689 0.4591 0.4641 0.4984 0.5007 0.5148 0.3647 0.3822 0.3878 0.4665 UTR_5_UCSC.extend.500.bedL2 0.0364 0.6411 0.7723 0.8765 0.6744 0.7154 0.7046 0.7436 0.7679 0.7492 0.6856 0.6654 0.6920 0.3858 0.4626 0.6248 0.6666 0.6552 0.6663 0.7049 0.7176 0.7622 0.7648 0.6951 0.7352 0.7432 0.6672 0.6594 0.6652 0.7202 0.7194 0.7512 0.5412 0.5633 0.5911 0.6964 WeakEnhancer_Hoffman.bedL2 0.1194 0.3913 0.4714 0.5974 0.5148 0.5940 0.6330 0.6604 0.7842 0.6870 0.7603 0.7467 0.6707 0.5470 0.5823 0.7562 0.7918 0.7707 0.7380 0.7883 0.7852 0.7384 0.7369 0.8226 0.7877 0.7300 0.4517 0.4444 0.4548 0.7874 0.8013 0.8186 0.5131 0.5264 0.5258 0.6525 WeakEnhancer_Hoffman.extend.500.bedL2 0.1252 0.4381 0.5314 0.6644 0.5797 0.6678 0.6896 0.7186 0.8511 0.7677 0.8295 0.8178 0.7520 0.5580 0.6186 0.8263 0.8672 0.8298 0.8079 0.8588 0.8578 0.8019 0.8026 0.8848 0.8626 0.8120 0.4804 0.4724 0.4879 0.8200 0.8465 0.8722 0.5858 0.5992 0.5959 0.7184 Promoter_UCSC.bedL2 Promoter_UCSC.extend.500.bedL2 Repressed_Hoffman.bedL2 Repressed_Hoffman.extend.500.bedL2 SuperEnhancer_Hnisz.bedL2 SuperEnhancer_Hnisz.extend.500.bedL2 TFBS_ENCODE.bedL2 TFBS_ENCODE.extend.500.bedL2 Transcribed_Hoffman.bedL2 Transcribed_Hoffman.extend.500.bedL2 TSS_Hoffman.bedL2 TSS_Hoffman.extend.500.bedL2 UTR_3_UCSC.bedL2 UTR_3_UCSC.extend.500.bedL2 UTR_5_UCSC.bedL2 UTR_5_UCSC.extend.500.bedL2 WeakEnhancer_Hoffman.bedL2 WeakEnhancer_Hoffman.extend.500.bedL2 MAF 0.0012 0.0018 0.0102 0.0146 0.0458 0.0462 0.1093 0.1111 0.0348 0.0235 0.0565 0.0651 0.0800 0.0768 0.0202 0.0364 0.1194 0.1252 baseL2 0.8653 0.8665 0.9688 0.9767 0.3693 0.3697 0.5769 0.7147 0.9071 0.9891 0.2454 0.2934 0.2544 0.4126 0.4532 0.6411 0.3913 0.4381 Coding_UCSC.bedL2 0.9465 0.9474 0.7902 0.7925 0.4341 0.4353 0.6545 0.7119 0.8360 0.8435 0.4565 0.4885 0.5263 0.6125 0.5963 0.7723 0.4714 0.5314 Coding_UCSC.extend.500.bedL2 0.8548 0.8577 0.6652 0.6779 0.5635 0.5652 0.7913 0.8173 0.8636 0.7829 0.6206 0.6592 0.6293 0.7541 0.6279 0.8765 0.5974 0.6644 Conserved_LindbladToh.bedL2 0.7405 0.7420 0.7022 0.7145 0.4857 0.4864 0.6882 0.7533 0.8109 0.7836 0.4162 0.4501 0.3800 0.4958 0.4870 0.6744 0.5148 0.5797 Conserved_LindbladToh.extend.500.bedL2 0.7201 0.7226 0.7214 0.7403 0.5703 0.5711 0.7839 0.8604 0.8883 0.8305 0.4394 0.4840 0.4468 0.5676 0.5032 0.7154 0.5940 0.6678 CTCF_Hoffman.bedL2 0.7287 0.7330 0.6334 0.6515 0.5450 0.5470 0.8092 0.8384 0.7831 0.7342 0.5265 0.5841 0.5181 0.6449 0.4909 0.7046 0.6330 0.6896 CTCF_Hoffman.extend.500.bedL2 0.7734 0.7780 0.7163 0.7369 0.5772 0.5788 0.8321 0.8869 0.8609 0.8206 0.5303 0.5931 0.5132 0.6571 0.5102 0.7436 0.6604 0.7186 DGF_ENCODE.bedL2 0.6668 0.6713 0.5593 0.5854 0.7174 0.7189 0.9490 0.9663 0.8477 0.7192 0.6538 0.7069 0.6156 0.7409 0.5250 0.7679 0.7842 0.8511 DGF_ENCODE.extend.500.bedL2 0.7431 0.7471 0.7195 0.7429 0.6171 0.6187 0.8891 0.9664 0.9199 0.8465 0.5180 0.5727 0.5267 0.6700 0.5144 0.7492 0.6870 0.7677 DHS_peaks_Trynka.bedL2 0.5804 0.5838 0.5126 0.5385 0.6906 0.6921 0.9121 0.9360 0.7814 0.6624 0.5913 0.6340 0.5598 0.6600 0.4721 0.6856 0.7603 0.8295 DHS_Trynka.bedL2 0.5772 0.5807 0.5324 0.5584 0.6620 0.6633 0.9033 0.9392 0.7890 0.6776 0.5531 0.5987 0.5444 0.6449 0.4608 0.6654 0.7467 0.8178 DHS_Trynka.extend.500.bedL2 0.6853 0.6891 0.6967 0.7196 0.5948 0.5961 0.8639 0.9473 0.8824 0.8170 0.4748 0.5285 0.4919 0.6212 0.4782 0.6920 0.6707 0.7520 Enhancer_Andersson.bedL2 0.2756 0.2789 0.2085 0.2275 0.5141 0.5144 0.5505 0.5250 0.3827 0.3087 0.4091 0.4572 0.3274 0.3792 0.2726 0.3858 0.5470 0.5580 Enhancer_Andersson.extend.500.bedL2 0.3863 0.3906 0.2806 0.3010 0.5759 0.5769 0.6472 0.6327 0.4720 0.3904 0.4740 0.5259 0.4248 0.4832 0.3220 0.4626 0.5823 0.6186 Enhancer_Hoffman.bedL2 0.4239 0.4276 0.2084 0.2347 0.7657 0.7674 0.8515 0.7818 0.5739 0.3916 0.7129 0.7670 0.5978 0.6458 0.4162 0.6248 0.7562 0.8263 Enhancer_Hoffman.extend.500.bedL2 0.4499 0.4541 0.2259 0.2543 0.7804 0.7822 0.8882 0.8248 0.6171 0.4207 0.7505 0.8072 0.6320 0.6955 0.4429 0.6666 0.7918 0.8672 FetalDHS_Trynka.bedL2 0.5174 0.5210 0.4341 0.4583 0.7052 0.7061 0.8889 0.8931 0.7153 0.5850 0.6102 0.6517 0.5573 0.6431 0.4569 0.6552 0.7707 0.8298 FetalDHS_Trynka.extend.500.bedL2 0.5900 0.5940 0.5648 0.5889 0.6792 0.6802 0.8845 0.9313 0.7984 0.7013 0.5354 0.5903 0.5247 0.6341 0.4627 0.6663 0.7380 0.8079 H3K27ac_Hnisz.bedL2 0.5503 0.5548 0.4077 0.4362 0.8549 0.8565 0.9035 0.8973 0.7436 0.5827 0.6423 0.6956 0.6115 0.7146 0.4835 0.7049 0.7883 0.8588 H3K27ac_Hnisz.extend.500.bedL2 0.5742 0.5789 0.4479 0.4769 0.8351 0.8368 0.9111 0.9160 0.7723 0.6200 0.6326 0.6874 0.6078 0.7162 0.4903 0.7176 0.7852 0.8578 H3K27ac_PGC2.bedL2 0.7119 0.7158 0.6346 0.6594 0.7688 0.7698 0.8820 0.9201 0.8831 0.7810 0.5899 0.6521 0.5555 0.6886 0.5236 0.7622 0.7384 0.8019 H3K27ac_PGC2.extend.500.bedL2 0.7129 0.7170 0.6437 0.6694 0.7513 0.7525 0.8851 0.9290 0.8911 0.7902 0.5813 0.6429 0.5579 0.6927 0.5229 0.7648 0.7369 0.8026 H3K4me1_peaks_Trynka.bedL2 0.4971 0.5016 0.3249 0.3536 0.7925 0.7937 0.9173 0.8889 0.7106 0.5157 0.6856 0.7361 0.6478 0.7271 0.4764 0.6951 0.8226 0.8848 H3K4me1_Trynka.bedL2 0.5553 0.5602 0.4318 0.4609 0.7586 0.7605 0.9311 0.9377 0.7857 0.6138 0.6475 0.7010 0.6359 0.7364 0.4974 0.7352 0.7877 0.8626 H3K4me1_Trynka.extend.500.bedL2 0.6319 0.6368 0.5715 0.5990 0.6777 0.6796 0.9120 0.9598 0.8592 0.7302 0.5726 0.6259 0.5878 0.7033 0.5045 0.7432 0.7300 0.8120 H3K4me3_peaks_Trynka.bedL2 0.8305 0.8309 0.8815 0.8911 0.4424 0.4426 0.5948 0.6886 0.8646 0.9189 0.3493 0.3949 0.3088 0.4556 0.4689 0.6672 0.4517 0.4804 H3K4me3_Trynka.bedL2 0.8126 0.8137 0.8761 0.8868 0.4346 0.4349 0.5899 0.6867 0.8601 0.9140 0.3442 0.3901 0.3062 0.4580 0.4591 0.6594 0.4444 0.4724 H3K4me3_Trynka.extend.500.bedL2 0.8297 0.8308 0.8934 0.9043 0.4425 0.4429 0.6036 0.7070 0.8802 0.9332 0.3349 0.3830 0.3080 0.4617 0.4641 0.6652 0.4548 0.4879 H3K9ac_peaks_Trynka.bedL2 0.4834 0.4883 0.2350 0.2582 0.7609 0.7624 0.8609 0.7769 0.6116 0.4183 0.8285 0.8666 0.6800 0.7437 0.4984 0.7202 0.7874 0.8200 H3K9ac_Trynka.bedL2 0.4817 0.4864 0.2225 0.2473 0.7881 0.7896 0.8782 0.7954 0.6181 0.4134 0.8212 0.8623 0.6921 0.7587 0.5007 0.7194 0.8013 0.8465 H3K9ac_Trynka.extend.500.bedL2 0.5245 0.5295 0.2982 0.3251 0.7974 0.7990 0.9089 0.8545 0.6957 0.4935 0.7838 0.8330 0.6895 0.7762 0.5148 0.7512 0.8186 0.8722 Intron_UCSC.bedL2 0.3986 0.4026 0.3872 0.4147 0.4937 0.4946 0.6475 0.6855 0.6783 0.5359 0.3776 0.4180 0.4643 0.5506 0.3647 0.5412 0.5131 0.5858 Intron_UCSC.extend.500.bedL2 0.4200 0.4241 0.4016 0.4290 0.5058 0.5068 0.6646 0.7013 0.6941 0.5516 0.3976 0.4381 0.4797 0.5686 0.3822 0.5633 0.5264 0.5992 PromoterFlanking_Hoffman.bedL2 0.3624 0.3648 0.1611 0.1794 0.4878 0.4910 0.6701 0.6256 0.5006 0.3180 0.6302 0.6669 0.5656 0.6127 0.3878 0.5911 0.5258 0.5959 PromoterFlanking_Hoffman.extend.500.bedL2 0.4461 0.4493 0.2126 0.2350 0.5911 0.5944 0.7943 0.7354 0.5686 0.3837 0.7721 0.8176 0.6645 0.7190 0.4665 0.6964 0.6525 0.7184 Promoter_UCSC.bedL2 1.0000 0.9992 0.8504 0.8489 0.3955 0.3965 0.6132 0.6855 0.8341 0.8786 0.4171 0.4451 0.3737 0.5216 0.5720 0.7578 0.4238 0.4794 Promoter_UCSC.extend.500.bedL2 0.9992 1.0000 0.8507 0.8495 0.3982 0.3992 0.6167 0.6898 0.8369 0.8802 0.4181 0.4476 0.3769 0.5247 0.5730 0.7593 0.4267 0.4827 Repressed_Hoffman.bedL2 0.8504 0.8507 1.0000 0.9981 0.2328 0.2330 0.4433 0.6037 0.8182 0.9661 0.1101 0.1494 0.1338 0.2823 0.4015 0.5384 0.2529 0.2923 Repressed_Hoffman.extend.500.bedL2 0.8489 0.8495 0.9981 1.0000 0.2538 0.2541 0.4709 0.6310 0.8374 0.9750 0.1266 0.1683 0.1552 0.3042 0.4062 0.5520 0.2811 0.3235 SuperEnhancer_Hnisz.bedL2 0.3955 0.3982 0.2328 0.2538 1.0000 0.9998 0.7364 0.6868 0.5360 0.3854 0.5951 0.6410 0.5103 0.5679 0.3860 0.5555 0.6852 0.7264 SuperEnhancer_Hnisz.extend.500.bedL2 0.3965 0.3992 0.2330 0.2541 0.9998 1.0000 0.7386 0.6888 0.5366 0.3859 0.5974 0.6432 0.5128 0.5701 0.3881 0.5583 0.6858 0.7274 TFBS_ENCODE.bedL2 0.6132 0.6167 0.4433 0.4709 0.7364 0.7386 1.0000 0.9600 0.7742 0.6183 0.7587 0.7998 0.6613 0.7661 0.5394 0.7721 0.8112 0.8772 TFBS_ENCODE.extend.500.bedL2 0.6855 0.6898 0.6037 0.6310 0.6868 0.6888 0.9600 1.0000 0.8702 0.7575 0.6209 0.6753 0.5928 0.7233 0.5246 0.7637 0.7596 0.8397 Transcribed_Hoffman.bedL2 0.8341 0.8369 0.8182 0.8374 0.5360 0.5366 0.7742 0.8702 1.0000 0.9362 0.4457 0.4954 0.4572 0.6093 0.5283 0.7648 0.5682 0.6465 Transcribed_Hoffman.extend.500.bedL2 0.8786 0.8802 0.9661 0.9750 0.3854 0.3859 0.6183 0.7575 0.9362 1.0000 0.2687 0.3164 0.2847 0.4419 0.4737 0.6631 0.4164 0.4744 TSS_Hoffman.bedL2 0.4171 0.4181 0.1101 0.1266 0.5951 0.5974 0.7587 0.6209 0.4457 0.2687 1.0000 0.9683 0.6300 0.6744 0.4818 0.6756 0.6320 0.6565 TSS_Hoffman.extend.500.bedL2 0.4451 0.4476 0.1494 0.1683 0.6410 0.6432 0.7998 0.6753 0.4954 0.3164 0.9683 1.0000 0.6502 0.7053 0.4865 0.6956 0.6932 0.7225 UTR_3_UCSC.bedL2 0.3737 0.3769 0.1338 0.1552 0.5103 0.5128 0.6613 0.5928 0.4572 0.2847 0.6300 0.6502 1.0000 0.8647 0.4368 0.6069 0.5453 0.5920 UTR_3_UCSC.extend.500.bedL2 0.5216 0.5247 0.2823 0.3042 0.5679 0.5701 0.7661 0.7233 0.6093 0.4419 0.6744 0.7053 0.8647 1.0000 0.5027 0.7237 0.6262 0.6898 UTR_5_UCSC.bedL2 0.5720 0.5730 0.4015 0.4062 0.3860 0.3881 0.5394 0.5246 0.5283 0.4737 0.4818 0.4865 0.4368 0.5027 1.0000 0.7813 0.3974 0.4335 UTR_5_UCSC.extend.500.bedL2 0.7578 0.7593 0.5384 0.5520 0.5555 0.5583 0.7721 0.7637 0.7648 0.6631 0.6756 0.6956 0.6069 0.7237 0.7813 1.0000 0.5829 0.6435 WeakEnhancer_Hoffman.bedL2 0.4238 0.4267 0.2529 0.2811 0.6852 0.6858 0.8112 0.7596 0.5682 0.4164 0.6320 0.6932 0.5453 0.6262 0.3974 0.5829 1.0000 0.9369 WeakEnhancer_Hoffman.extend.500.bedL2 0.4794 0.4827 0.2923 0.3235 0.7264 0.7274 0.8772 0.8397 0.6465 0.4744 0.6565 0.7225 0.5920 0.6898 0.4335 0.6435 0.9369 1.0000 LD Score Matrix Condition Number 1753.3221 Annotation Correlation Matrix base Coding_UCSC.bed Coding_UCSC.extend.500.bed Conserved_LindbladToh.bed Conserved_LindbladToh.extend.500.bed CTCF_Hoffman.bed CTCF_Hoffman.extend.500.bed DGF_ENCODE.bed DGF_ENCODE.extend.500.bed DHS_peaks_Trynka.bed DHS_Trynka.bed DHS_Trynka.extend.500.bed Enhancer_Andersson.bed Enhancer_Andersson.extend.500.bed Enhancer_Hoffman.bed Enhancer_Hoffman.extend.500.bed FetalDHS_Trynka.bed FetalDHS_Trynka.extend.500.bed H3K27ac_Hnisz.bed H3K27ac_Hnisz.extend.500.bed H3K27ac_PGC2.bed H3K27ac_PGC2.extend.500.bed H3K4me1_peaks_Trynka.bed H3K4me1_Trynka.bed H3K4me1_Trynka.extend.500.bed H3K4me3_peaks_Trynka.bed H3K4me3_Trynka.bed H3K4me3_Trynka.extend.500.bed H3K9ac_peaks_Trynka.bed H3K9ac_Trynka.bed H3K9ac_Trynka.extend.500.bed Intron_UCSC.bed Intron_UCSC.extend.500.bed PromoterFlanking_Hoffman.bed PromoterFlanking_Hoffman.extend.500.bed Promoter_UCSC.bed Promoter_UCSC.extend.500.bed Repressed_Hoffman.bed \ base NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN Coding_UCSC.bed NaN 1.0000 0.4927 0.2746 0.1487 0.0135 0.0249 0.0647 0.0594 0.0412 0.0452 0.0409 -0.0085 -0.0159 0.0335 0.0399 0.0411 0.0322 0.0668 0.0650 0.0679 0.0680 0.0498 0.0781 0.0676 0.0660 0.0918 0.0755 0.0677 0.1081 0.1008 -0.0782 0.0471 5.9765e-03 0.0239 0.1792 0.1747 -0.0795 Coding_UCSC.extend.500.bed NaN 0.4927 1.0000 0.1570 0.3221 0.0209 0.0425 0.0921 0.1154 0.0667 0.0719 0.0847 -0.0143 -0.0210 0.0611 0.0809 0.0725 0.0665 0.1391 0.1356 0.1326 0.1355 0.0886 0.1598 0.1494 0.1071 0.1582 0.1397 0.1241 0.1973 0.2042 0.1572 0.2331 2.4676e-02 0.0646 0.3094 0.3007 -0.1630 Conserved_LindbladToh.bed NaN 0.2746 0.1570 1.0000 0.2428 0.0122 0.0162 0.0917 0.0699 0.1259 0.1294 0.0886 0.0186 0.0098 0.0447 0.0435 0.1375 0.0998 0.0612 0.0610 0.0683 0.0645 0.0754 0.0978 0.0820 0.0599 0.0804 0.0665 0.0530 0.0887 0.0815 0.0049 0.0572 9.8610e-03 0.0180 0.0744 0.0698 -0.0386 Conserved_LindbladToh.extend.500.bed NaN 0.1487 0.3221 0.2428 1.0000 0.0532 0.0634 0.1255 0.2058 0.1636 0.1976 0.2584 0.0242 0.0408 0.1095 0.1259 0.1836 0.2610 0.2024 0.2017 0.1989 0.1988 0.1912 0.2741 0.2685 0.0972 0.1381 0.1418 0.1298 0.2126 0.2250 0.1774 0.2029 3.2382e-02 0.0607 0.1322 0.1285 -0.1193 CTCF_Hoffman.bed NaN 0.0135 0.0209 0.0122 0.0532 1.0000 0.5684 0.1240 0.1288 0.1344 0.1396 0.1241 0.0057 0.0107 0.0510 0.0828 0.1353 0.1372 0.0676 0.0689 0.0683 0.0680 0.0925 0.0976 0.0856 0.0498 0.0720 0.0826 0.0750 0.1093 0.1202 0.0043 0.0076 -2.8822e-03 0.0289 0.0167 0.0189 -0.1491 CTCF_Hoffman.extend.500.bed NaN 0.0249 0.0425 0.0162 0.0634 0.5684 1.0000 0.1036 0.1798 0.1057 0.1148 0.1703 0.0060 0.0221 0.0746 0.1151 0.1063 0.1699 0.1091 0.1142 0.1065 0.1074 0.1096 0.1326 0.1348 0.0579 0.0905 0.1154 0.0937 0.1450 0.1746 0.0153 0.0206 1.3200e-02 0.0464 0.0402 0.0419 -0.1338 DGF_ENCODE.bed NaN 0.0647 0.0921 0.0917 0.1255 0.1240 0.1036 1.0000 0.3761 0.5131 0.4956 0.2741 0.0864 0.0809 0.2052 0.2080 0.3531 0.2380 0.2304 0.2251 0.2489 0.2330 0.2950 0.2974 0.2362 0.1783 0.2447 0.2208 0.1755 0.2668 0.2548 0.0568 0.0743 6.3136e-02 0.1061 0.1091 0.1093 -0.1878 DGF_ENCODE.extend.500.bed NaN 0.0594 0.1154 0.0699 0.2058 0.1288 0.1798 0.3761 1.0000 0.2717 0.3361 0.5692 0.0487 0.0972 0.1975 0.2637 0.2289 0.3890 0.3797 0.3850 0.3688 0.3729 0.3348 0.4924 0.4883 0.1466 0.2476 0.3066 0.1739 0.3107 0.3742 0.1183 0.1318 7.2011e-02 0.1402 0.1156 0.1197 -0.2515 DHS_peaks_Trynka.bed NaN 0.0412 0.0667 0.1259 0.1636 0.1344 0.1057 0.5131 0.2717 1.0000 0.7776 0.3651 0.0970 0.0863 0.2204 0.2097 0.6537 0.3782 0.2098 0.2029 0.2384 0.2164 0.3079 0.3008 0.2325 0.2078 0.2468 0.2139 0.1983 0.2707 0.2434 0.0505 0.0655 4.0255e-02 0.0879 0.0903 0.0830 -0.1547 DHS_Trynka.bed NaN 0.0452 0.0719 0.1294 0.1976 0.1396 0.1148 0.4956 0.3361 0.7776 1.0000 0.4599 0.0967 0.1056 0.2569 0.2439 0.6842 0.4436 0.2506 0.2432 0.2837 0.2579 0.3596 0.3660 0.2853 0.2262 0.2784 0.2470 0.2223 0.3080 0.2807 0.0591 0.0747 4.1939e-02 0.0944 0.0939 0.0866 -0.1812 DHS_Trynka.extend.500.bed NaN 0.0409 0.0847 0.0886 0.2584 0.1241 0.1703 0.2741 0.5692 0.3651 0.4599 1.0000 0.0512 0.1041 0.2059 0.2688 0.3146 0.6437 0.3538 0.3606 0.3602 0.3532 0.3418 0.5034 0.5004 0.1424 0.2206 0.2806 0.1694 0.2943 0.3483 0.1147 0.1253 5.1673e-02 0.1135 0.0898 0.0851 -0.2029 Enhancer_Andersson.bed NaN -0.0085 -0.0143 0.0186 0.0242 0.0057 0.0060 0.0864 0.0487 0.0970 0.0967 0.0512 1.0000 0.4711 0.1172 0.0945 0.1118 0.0690 0.0612 0.0586 0.0767 0.0676 0.0664 0.0593 0.0441 0.0681 0.0905 0.0720 0.0543 0.0825 0.0694 0.0126 0.0111 1.7543e-02 0.0287 0.0082 0.0118 -0.0404 Enhancer_Andersson.extend.500.bed NaN -0.0159 -0.0210 0.0098 0.0408 0.0107 0.0221 0.0809 0.0972 0.0863 0.1056 0.1041 0.4711 1.0000 0.1858 0.1767 0.1051 0.1349 0.1203 0.1150 0.1464 0.1309 0.1189 0.1153 0.0898 0.1081 0.1464 0.1330 0.1016 0.1469 0.1330 0.0248 0.0221 2.3439e-02 0.0511 0.0168 0.0205 -0.0744 Enhancer_Hoffman.bed NaN 0.0335 0.0611 0.0447 0.1095 0.0510 0.0746 0.2052 0.1975 0.2204 0.2569 0.2059 0.1172 0.1858 1.0000 0.6799 0.2279 0.2423 0.2444 0.2333 0.3222 0.2838 0.2766 0.2349 0.1737 0.2453 0.3068 0.2643 0.2445 0.3297 0.2833 0.0401 0.0512 5.3239e-02 0.1481 0.1266 0.1232 -0.2014 Enhancer_Hoffman.extend.500.bed NaN 0.0399 0.0809 0.0435 0.1259 0.0828 0.1151 0.2080 0.2637 0.2097 0.2439 0.2688 0.0945 0.1767 0.6799 1.0000 0.2173 0.2926 0.3313 0.3267 0.4310 0.3979 0.2950 0.3113 0.2505 0.2318 0.3420 0.3515 0.2419 0.3779 0.3826 0.0606 0.0746 1.0405e-01 0.2363 0.1758 0.1730 -0.2772 FetalDHS_Trynka.bed NaN 0.0411 0.0725 0.1375 0.1836 0.1353 0.1063 0.3531 0.2289 0.6537 0.6842 0.3146 0.1118 0.1051 0.2279 0.2173 1.0000 0.4888 0.2071 0.1992 0.2409 0.2160 0.3030 0.2838 0.2171 0.2463 0.2746 0.2296 0.2280 0.2944 0.2551 0.0417 0.0590 3.7686e-02 0.0980 0.1087 0.0986 -0.1382 FetalDHS_Trynka.extend.500.bed NaN 0.0322 0.0665 0.0998 0.2610 0.1372 0.1699 0.2380 0.3890 0.3782 0.4436 0.6437 0.0690 0.1349 0.2423 0.2926 0.4888 1.0000 0.3326 0.3328 0.3588 0.3388 0.3550 0.4498 0.3996 0.1899 0.2715 0.3108 0.2127 0.3395 0.3652 0.0879 0.0991 5.4402e-02 0.1238 0.1092 0.0999 -0.1793 H3K27ac_Hnisz.bed NaN 0.0668 0.1391 0.0612 0.2024 0.0676 0.1091 0.2304 0.3797 0.2098 0.2506 0.3538 0.0612 0.1203 0.2444 0.3313 0.2071 0.3326 1.0000 0.9411 0.5687 0.6031 0.3508 0.5195 0.4919 0.1634 0.2857 0.3522 0.2133 0.3919 0.4831 0.2043 0.2175 7.4379e-02 0.1406 0.1298 0.1400 -0.2990 H3K27ac_Hnisz.extend.500.bed NaN 0.0650 0.1356 0.0610 0.2017 0.0689 0.1142 0.2251 0.3850 0.2029 0.2432 0.3606 0.0586 0.1150 0.2333 0.3267 0.1992 0.3328 0.9411 1.0000 0.5753 0.6203 0.3421 0.5228 0.5150 0.1553 0.2743 0.3487 0.2047 0.3794 0.4810 0.2014 0.2142 7.3809e-02 0.1415 0.1259 0.1369 -0.2966 H3K27ac_PGC2.bed NaN 0.0679 0.1326 0.0683 0.1989 0.0683 0.1065 0.2489 0.3688 0.2384 0.2837 0.3602 0.0767 0.1464 0.3222 0.4310 0.2409 0.3588 0.5687 0.5753 1.0000 0.8596 0.3850 0.5182 0.4459 0.2258 0.3841 0.4477 0.2653 0.4746 0.5425 0.1737 0.1884 1.0351e-01 0.1957 0.1741 0.1789 -0.3031 H3K27ac_PGC2.extend.500.bed NaN 0.0680 0.1355 0.0645 0.1988 0.0680 0.1074 0.2330 0.3729 0.2164 0.2579 0.3532 0.0676 0.1309 0.2838 0.3979 0.2160 0.3388 0.6031 0.6203 0.8596 1.0000 0.3655 0.5291 0.4838 0.1994 0.3484 0.4255 0.2389 0.4377 0.5304 0.1875 0.2018 9.6398e-02 0.1863 0.1678 0.1764 -0.3098 H3K4me1_peaks_Trynka.bed NaN 0.0498 0.0886 0.0754 0.1912 0.0925 0.1096 0.2950 0.3348 0.3079 0.3596 0.3418 0.0664 0.1189 0.2766 0.2950 0.3030 0.3550 0.3508 0.3421 0.3850 0.3655 1.0000 0.5341 0.3843 0.2650 0.3623 0.3357 0.3072 0.4282 0.3973 0.1431 0.1539 1.2187e-01 0.1729 0.1265 0.1297 -0.2439 H3K4me1_Trynka.bed NaN 0.0781 0.1598 0.0978 0.2741 0.0976 0.1326 0.2974 0.4924 0.3008 0.3660 0.5034 0.0593 0.1153 0.2349 0.3113 0.2838 0.4498 0.5195 0.5228 0.5182 0.5291 0.5341 1.0000 0.7138 0.1856 0.3219 0.4003 0.2289 0.4213 0.5109 0.2195 0.2354 9.5727e-02 0.1731 0.1385 0.1446 -0.3158 H3K4me1_Trynka.extend.500.bed NaN 0.0676 0.1494 0.0820 0.2685 0.0856 0.1348 0.2362 0.4883 0.2325 0.2853 0.5004 0.0441 0.0898 0.1737 0.2505 0.2171 0.3996 0.4919 0.5150 0.4459 0.4838 0.3843 0.7138 1.0000 0.1271 0.2243 0.3148 0.1683 0.3157 0.4323 0.2266 0.2398 7.0626e-02 0.1407 0.1153 0.1237 -0.2761 H3K4me3_peaks_Trynka.bed NaN 0.0660 0.1071 0.0599 0.0972 0.0498 0.0579 0.1783 0.1466 0.2078 0.2262 0.1424 0.0681 0.1081 0.2453 0.2318 0.2463 0.1899 0.1634 0.1553 0.2258 0.1994 0.2650 0.1856 0.1271 1.0000 0.5232 0.3612 0.3675 0.3440 0.2600 0.0449 0.0633 1.0025e-01 0.1630 0.1627 0.1578 -0.1501 H3K4me3_Trynka.bed NaN 0.0918 0.1582 0.0804 0.1381 0.0720 0.0905 0.2447 0.2476 0.2468 0.2784 0.2206 0.0905 0.1464 0.3068 0.3420 0.2746 0.2715 0.2857 0.2743 0.3841 0.3484 0.3623 0.3219 0.2243 0.5232 1.0000 0.6839 0.3416 0.5348 0.4498 0.0830 0.1084 1.7229e-01 0.2671 0.2467 0.2526 -0.2520 H3K4me3_Trynka.extend.500.bed NaN 0.0755 0.1397 0.0665 0.1418 0.0826 0.1154 0.2208 0.3066 0.2139 0.2470 0.2806 0.0720 0.1330 0.2643 0.3515 0.2296 0.3108 0.3522 0.3487 0.4477 0.4255 0.3357 0.4003 0.3148 0.3612 0.6839 1.0000 0.2704 0.4816 0.5289 0.0957 0.1152 1.3105e-01 0.2487 0.2051 0.2141 -0.2765 H3K9ac_peaks_Trynka.bed NaN 0.0677 0.1241 0.0530 0.1298 0.0750 0.0937 0.1755 0.1739 0.1983 0.2223 0.1694 0.0543 0.1016 0.2445 0.2419 0.2280 0.2127 0.2133 0.2047 0.2653 0.2389 0.3072 0.2289 0.1683 0.3675 0.3416 0.2704 1.0000 0.5276 0.3745 0.0855 0.1026 8.4420e-02 0.1426 0.1562 0.1560 -0.1585 H3K9ac_Trynka.bed NaN 0.1081 0.1973 0.0887 0.2126 0.1093 0.1450 0.2668 0.3107 0.2707 0.3080 0.2943 0.0825 0.1469 0.3297 0.3779 0.2944 0.3395 0.3919 0.3794 0.4746 0.4377 0.4282 0.4213 0.3157 0.3440 0.5348 0.4816 0.5276 1.0000 0.7045 0.1545 0.1810 1.4692e-01 0.2360 0.2375 0.2429 -0.2737 H3K9ac_Trynka.extend.500.bed NaN 0.1008 0.2042 0.0815 0.2250 0.1202 0.1746 0.2548 0.3742 0.2434 0.2807 0.3483 0.0694 0.1330 0.2833 0.3826 0.2551 0.3652 0.4831 0.4810 0.5425 0.5304 0.3973 0.5109 0.4323 0.2600 0.4498 0.5289 0.3745 0.7045 1.0000 0.1914 0.2145 1.2384e-01 0.2322 0.2151 0.2237 -0.3201 Intron_UCSC.bed NaN -0.0782 0.1572 0.0049 0.1774 0.0043 0.0153 0.0568 0.1183 0.0505 0.0591 0.1147 0.0126 0.0248 0.0401 0.0606 0.0417 0.0879 0.2043 0.2014 0.1737 0.1875 0.1431 0.2195 0.2266 0.0449 0.0830 0.0957 0.0855 0.1545 0.1914 1.0000 0.9764 3.9880e-02 0.0423 0.0588 0.0670 -0.2045 Intron_UCSC.extend.500.bed NaN 0.0471 0.2331 0.0572 0.2029 0.0076 0.0206 0.0743 0.1318 0.0655 0.0747 0.1253 0.0111 0.0221 0.0512 0.0746 0.0590 0.0991 0.2175 0.2142 0.1884 0.2018 0.1539 0.2354 0.2398 0.0633 0.1084 0.1152 0.1026 0.1810 0.2145 0.9764 1.0000 4.1617e-02 0.0518 0.0980 0.1040 -0.2194 PromoterFlanking_Hoffman.bed NaN 0.0060 0.0247 0.0099 0.0324 -0.0029 0.0132 0.0631 0.0720 0.0403 0.0419 0.0517 0.0175 0.0234 0.0532 0.1040 0.0377 0.0544 0.0744 0.0738 0.1035 0.0964 0.1219 0.0957 0.0706 0.1002 0.1723 0.1310 0.0844 0.1469 0.1238 0.0399 0.0416 1.0000e+00 0.4919 0.1178 0.1254 -0.0833 PromoterFlanking_Hoffman.extend.500.bed NaN 0.0239 0.0646 0.0180 0.0607 0.0289 0.0464 0.1061 0.1402 0.0879 0.0944 0.1135 0.0287 0.0511 0.1481 0.2363 0.0980 0.1238 0.1406 0.1415 0.1957 0.1863 0.1729 0.1731 0.1407 0.1630 0.2671 0.2487 0.1426 0.2360 0.2322 0.0423 0.0518 4.9188e-01 1.0000 0.2133 0.2177 -0.1435 Promoter_UCSC.bed NaN 0.1792 0.3094 0.0744 0.1322 0.0167 0.0402 0.1091 0.1156 0.0903 0.0939 0.0898 0.0082 0.0168 0.1266 0.1758 0.1087 0.1092 0.1298 0.1259 0.1741 0.1678 0.1265 0.1385 0.1153 0.1627 0.2467 0.2051 0.1562 0.2375 0.2151 0.0588 0.0980 1.1785e-01 0.2133 1.0000 0.8968 -0.1169 Promoter_UCSC.extend.500.bed NaN 0.1747 0.3007 0.0698 0.1285 0.0189 0.0419 0.1093 0.1197 0.0830 0.0866 0.0851 0.0118 0.0205 0.1232 0.1730 0.0986 0.0999 0.1400 0.1369 0.1789 0.1764 0.1297 0.1446 0.1237 0.1578 0.2526 0.2141 0.1560 0.2429 0.2237 0.0670 0.1040 1.2544e-01 0.2177 0.8968 1.0000 -0.1242 Repressed_Hoffman.bed NaN -0.0795 -0.1630 -0.0386 -0.1193 -0.1491 -0.1338 -0.1878 -0.2515 -0.1547 -0.1812 -0.2029 -0.0404 -0.0744 -0.2014 -0.2772 -0.1382 -0.1793 -0.2990 -0.2966 -0.3031 -0.3098 -0.2439 -0.3158 -0.2761 -0.1501 -0.2520 -0.2765 -0.1585 -0.2737 -0.3201 -0.2045 -0.2194 -8.3315e-02 -0.1435 -0.1169 -0.1242 1.0000 Repressed_Hoffman.extend.500.bed NaN -0.1190 -0.2586 -0.0544 -0.1656 -0.0807 -0.1053 -0.2042 -0.2681 -0.1626 -0.1867 -0.2168 -0.0577 -0.1038 -0.3075 -0.3911 -0.1560 -0.2073 -0.3974 -0.3909 -0.4070 -0.4115 -0.2872 -0.3746 -0.3299 -0.2031 -0.3430 -0.3649 -0.2235 -0.3789 -0.4298 -0.2899 -0.3128 -1.0486e-01 -0.1800 -0.1744 -0.1861 0.5962 SuperEnhancer_Hnisz.bed NaN 0.0635 0.1205 0.0419 0.1508 0.0486 0.0803 0.1793 0.2640 0.1420 0.1639 0.2268 0.0718 0.1307 0.2218 0.2848 0.1439 0.2276 0.6003 0.5649 0.4454 0.4513 0.2833 0.3715 0.3282 0.1519 0.2606 0.2925 0.2039 0.3615 0.4047 0.1859 0.1977 4.4756e-02 0.0945 0.1123 0.1204 -0.2485 SuperEnhancer_Hnisz.extend.500.bed NaN 0.0641 0.1215 0.0421 0.1513 0.0499 0.0821 0.1793 0.2654 0.1409 0.1627 0.2268 0.0709 0.1300 0.2211 0.2866 0.1426 0.2275 0.6002 0.5713 0.4486 0.4564 0.2831 0.3734 0.3318 0.1516 0.2609 0.2949 0.2035 0.3621 0.4083 0.1858 0.1977 4.6336e-02 0.0983 0.1145 0.1231 -0.2506 TFBS_ENCODE.bed NaN 0.0691 0.1175 0.0797 0.1461 0.2561 0.1945 0.3811 0.3026 0.3769 0.4305 0.2899 0.1044 0.1315 0.3401 0.3428 0.3523 0.2968 0.2557 0.2478 0.2964 0.2722 0.2990 0.2957 0.2318 0.2518 0.3260 0.2866 0.2360 0.3321 0.3023 0.0530 0.0740 6.4221e-02 0.1425 0.1680 0.1639 -0.2357 TFBS_ENCODE.extend.500.bed NaN 0.0571 0.1092 0.0633 0.1763 0.1995 0.2988 0.2637 0.4521 0.2564 0.3103 0.4426 0.0656 0.1302 0.2857 0.3736 0.2395 0.3794 0.3530 0.3527 0.3809 0.3692 0.3155 0.4003 0.3663 0.1871 0.2980 0.3374 0.2013 0.3406 0.3750 0.0858 0.1007 8.3992e-02 0.1692 0.1500 0.1506 -0.2696 Transcribed_Hoffman.bed NaN 0.0652 0.1380 0.0166 0.0707 -0.0413 -0.0171 0.0291 0.0760 -0.0064 -0.0023 0.0379 -0.0060 -0.0075 -0.0065 0.0061 -0.0210 0.0005 0.1355 0.1352 0.0951 0.1130 0.0694 0.1343 0.1398 -0.0050 0.0263 0.0461 0.0287 0.0702 0.1109 0.2569 0.2622 7.7974e-05 -0.0052 0.0008 0.0124 -0.6867 Transcribed_Hoffman.extend.500.bed NaN 0.0048 0.0134 -0.0075 0.0067 -0.0358 -0.0381 -0.0377 -0.0042 -0.0545 -0.0577 -0.0202 -0.0211 -0.0340 -0.0783 -0.0801 -0.0716 -0.0578 -0.0081 -0.0058 -0.0396 -0.0273 -0.0327 -0.0080 0.0213 -0.0910 -0.1096 -0.0899 -0.0576 -0.0651 -0.0448 0.1298 0.1236 -1.5570e-02 -0.0448 -0.0689 -0.0602 -0.1348 TSS_Hoffman.bed NaN 0.0989 0.1839 0.0608 0.1091 0.0283 0.0388 0.1861 0.1278 0.2005 0.2063 0.1288 0.0824 0.1060 0.1814 0.2446 0.2433 0.1800 0.1530 0.1444 0.2149 0.1858 0.1757 0.1455 0.1094 0.3068 0.3062 0.2193 0.2757 0.3090 0.2263 0.0371 0.0746 8.4688e-02 0.2347 0.3199 0.3009 -0.1259 TSS_Hoffman.extend.500.bed NaN 0.0903 0.1744 0.0553 0.1178 0.0514 0.0728 0.1796 0.1710 0.1795 0.1920 0.1660 0.0781 0.1291 0.2815 0.3701 0.2192 0.2203 0.2054 0.1968 0.2823 0.2509 0.2208 0.1984 0.1518 0.2924 0.3760 0.2946 0.2745 0.3706 0.3016 0.0485 0.0808 2.0553e-01 0.3754 0.3495 0.3372 -0.1722 UTR_3_UCSC.bed NaN 0.5585 0.2999 0.0758 0.0912 0.0199 0.0271 0.0379 0.0480 0.0214 0.0236 0.0356 -0.0068 -0.0128 0.0224 0.0282 0.0171 0.0265 0.0614 0.0613 0.0547 0.0596 0.0410 0.0695 0.0634 0.0238 0.0511 0.0479 0.0409 0.0741 0.0818 -0.0352 0.0073 2.5440e-03 0.0160 0.0669 0.0760 -0.0653 UTR_3_UCSC.extend.500.bed NaN 0.4207 0.4694 0.0847 0.1567 0.0231 0.0407 0.0612 0.0779 0.0345 0.0397 0.0553 -0.0095 -0.0159 0.0321 0.0463 0.0308 0.0410 0.0924 0.0917 0.0815 0.0884 0.0591 0.0992 0.0938 0.0436 0.0857 0.0813 0.0651 0.1161 0.1270 0.0224 0.0667 1.2082e-02 0.0322 0.1557 0.1613 -0.1002 UTR_5_UCSC.bed NaN 0.2959 0.1742 0.0840 0.0642 0.0065 0.0115 0.0586 0.0442 0.0545 0.0583 0.0409 -0.0004 -0.0017 0.0476 0.0540 0.0701 0.0490 0.0527 0.0507 0.0630 0.0596 0.0411 0.0528 0.0454 0.0908 0.0963 0.0735 0.0755 0.0935 0.0778 0.0084 0.0680 1.5031e-02 0.0424 0.1899 0.1771 -0.0514 UTR_5_UCSC.extend.500.bed NaN 0.1869 0.4609 0.0837 0.1656 0.0103 0.0247 0.0946 0.0923 0.0949 0.1001 0.0821 -0.0067 -0.0070 0.0933 0.1152 0.1193 0.0956 0.1063 0.1032 0.1303 0.1247 0.0902 0.1171 0.1036 0.1561 0.1816 0.1419 0.1452 0.1869 0.1634 0.0938 0.1513 4.4396e-02 0.1058 0.4148 0.3852 -0.1074 WeakEnhancer_Hoffman.bed NaN 0.0077 0.0136 0.0343 0.0710 0.0424 0.0667 0.1895 0.1481 0.1967 0.2193 0.1509 0.0656 0.0754 0.1192 0.1772 0.1701 0.1566 0.1368 0.1337 0.1630 0.1513 0.2228 0.1730 0.1282 0.1259 0.1782 0.1628 0.1395 0.1884 0.1760 0.0363 0.0392 2.7657e-02 0.0735 0.0304 0.0309 -0.1519 WeakEnhancer_Hoffman.extend.500.bed NaN 0.0088 0.0221 0.0333 0.1112 0.0959 0.1321 0.1862 0.2787 0.1920 0.2296 0.2830 0.0641 0.1246 0.2408 0.3402 0.1778 0.2688 0.2598 0.2595 0.2940 0.2879 0.2835 0.3102 0.2580 0.1381 0.2365 0.2805 0.1676 0.2775 0.3128 0.0648 0.0682 6.3683e-02 0.1465 0.0571 0.0616 -0.2510 Repressed_Hoffman.extend.500.bed SuperEnhancer_Hnisz.bed SuperEnhancer_Hnisz.extend.500.bed TFBS_ENCODE.bed TFBS_ENCODE.extend.500.bed Transcribed_Hoffman.bed Transcribed_Hoffman.extend.500.bed TSS_Hoffman.bed TSS_Hoffman.extend.500.bed UTR_3_UCSC.bed UTR_3_UCSC.extend.500.bed UTR_5_UCSC.bed UTR_5_UCSC.extend.500.bed WeakEnhancer_Hoffman.bed WeakEnhancer_Hoffman.extend.500.bed base NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN Coding_UCSC.bed -0.1190 0.0635 0.0641 0.0691 0.0571 6.5200e-02 0.0048 0.0989 0.0903 0.5585 0.4207 0.2959 0.1869 0.0077 0.0088 Coding_UCSC.extend.500.bed -0.2586 0.1205 0.1215 0.1175 0.1092 1.3799e-01 0.0134 0.1839 0.1744 0.2999 0.4694 0.1742 0.4609 0.0136 0.0221 Conserved_LindbladToh.bed -0.0544 0.0419 0.0421 0.0797 0.0633 1.6622e-02 -0.0075 0.0608 0.0553 0.0758 0.0847 0.0840 0.0837 0.0343 0.0333 Conserved_LindbladToh.extend.500.bed -0.1656 0.1508 0.1513 0.1461 0.1763 7.0705e-02 0.0067 0.1091 0.1178 0.0912 0.1567 0.0642 0.1656 0.0710 0.1112 CTCF_Hoffman.bed -0.0807 0.0486 0.0499 0.2561 0.1995 -4.1348e-02 -0.0358 0.0283 0.0514 0.0199 0.0231 0.0065 0.0103 0.0424 0.0959 CTCF_Hoffman.extend.500.bed -0.1053 0.0803 0.0821 0.1945 0.2988 -1.7096e-02 -0.0381 0.0388 0.0728 0.0271 0.0407 0.0115 0.0247 0.0667 0.1321 DGF_ENCODE.bed -0.2042 0.1793 0.1793 0.3811 0.2637 2.9078e-02 -0.0377 0.1861 0.1796 0.0379 0.0612 0.0586 0.0946 0.1895 0.1862 DGF_ENCODE.extend.500.bed -0.2681 0.2640 0.2654 0.3026 0.4521 7.6026e-02 -0.0042 0.1278 0.1710 0.0480 0.0779 0.0442 0.0923 0.1481 0.2787 DHS_peaks_Trynka.bed -0.1626 0.1420 0.1409 0.3769 0.2564 -6.3567e-03 -0.0545 0.2005 0.1795 0.0214 0.0345 0.0545 0.0949 0.1967 0.1920 DHS_Trynka.bed -0.1867 0.1639 0.1627 0.4305 0.3103 -2.3437e-03 -0.0577 0.2063 0.1920 0.0236 0.0397 0.0583 0.1001 0.2193 0.2296 DHS_Trynka.extend.500.bed -0.2168 0.2268 0.2268 0.2899 0.4426 3.7907e-02 -0.0202 0.1288 0.1660 0.0356 0.0553 0.0409 0.0821 0.1509 0.2830 Enhancer_Andersson.bed -0.0577 0.0718 0.0709 0.1044 0.0656 -6.0122e-03 -0.0211 0.0824 0.0781 -0.0068 -0.0095 -0.0004 -0.0067 0.0656 0.0641 Enhancer_Andersson.extend.500.bed -0.1038 0.1307 0.1300 0.1315 0.1302 -7.4545e-03 -0.0340 0.1060 0.1291 -0.0128 -0.0159 -0.0017 -0.0070 0.0754 0.1246 Enhancer_Hoffman.bed -0.3075 0.2218 0.2211 0.3401 0.2857 -6.5494e-03 -0.0783 0.1814 0.2815 0.0224 0.0321 0.0476 0.0933 0.1192 0.2408 Enhancer_Hoffman.extend.500.bed -0.3911 0.2848 0.2866 0.3428 0.3736 6.1197e-03 -0.0801 0.2446 0.3701 0.0282 0.0463 0.0540 0.1152 0.1772 0.3402 FetalDHS_Trynka.bed -0.1560 0.1439 0.1426 0.3523 0.2395 -2.0992e-02 -0.0716 0.2433 0.2192 0.0171 0.0308 0.0701 0.1193 0.1701 0.1778 FetalDHS_Trynka.extend.500.bed -0.2073 0.2276 0.2275 0.2968 0.3794 5.1759e-04 -0.0578 0.1800 0.2203 0.0265 0.0410 0.0490 0.0956 0.1566 0.2688 H3K27ac_Hnisz.bed -0.3974 0.6003 0.6002 0.2557 0.3530 1.3547e-01 -0.0081 0.1530 0.2054 0.0614 0.0924 0.0527 0.1063 0.1368 0.2598 H3K27ac_Hnisz.extend.500.bed -0.3909 0.5649 0.5713 0.2478 0.3527 1.3516e-01 -0.0058 0.1444 0.1968 0.0613 0.0917 0.0507 0.1032 0.1337 0.2595 H3K27ac_PGC2.bed -0.4070 0.4454 0.4486 0.2964 0.3809 9.5093e-02 -0.0396 0.2149 0.2823 0.0547 0.0815 0.0630 0.1303 0.1630 0.2940 H3K27ac_PGC2.extend.500.bed -0.4115 0.4513 0.4564 0.2722 0.3692 1.1301e-01 -0.0273 0.1858 0.2509 0.0596 0.0884 0.0596 0.1247 0.1513 0.2879 H3K4me1_peaks_Trynka.bed -0.2872 0.2833 0.2831 0.2990 0.3155 6.9366e-02 -0.0327 0.1757 0.2208 0.0410 0.0591 0.0411 0.0902 0.2228 0.2835 H3K4me1_Trynka.bed -0.3746 0.3715 0.3734 0.2957 0.4003 1.3432e-01 -0.0080 0.1455 0.1984 0.0695 0.0992 0.0528 0.1171 0.1730 0.3102 H3K4me1_Trynka.extend.500.bed -0.3299 0.3282 0.3318 0.2318 0.3663 1.3982e-01 0.0213 0.1094 0.1518 0.0634 0.0938 0.0454 0.1036 0.1282 0.2580 H3K4me3_peaks_Trynka.bed -0.2031 0.1519 0.1516 0.2518 0.1871 -5.0036e-03 -0.0910 0.3068 0.2924 0.0238 0.0436 0.0908 0.1561 0.1259 0.1381 H3K4me3_Trynka.bed -0.3430 0.2606 0.2609 0.3260 0.2980 2.6252e-02 -0.1096 0.3062 0.3760 0.0511 0.0857 0.0963 0.1816 0.1782 0.2365 H3K4me3_Trynka.extend.500.bed -0.3649 0.2925 0.2949 0.2866 0.3374 4.6055e-02 -0.0899 0.2193 0.2946 0.0479 0.0813 0.0735 0.1419 0.1628 0.2805 H3K9ac_peaks_Trynka.bed -0.2235 0.2039 0.2035 0.2360 0.2013 2.8720e-02 -0.0576 0.2757 0.2745 0.0409 0.0651 0.0755 0.1452 0.1395 0.1676 H3K9ac_Trynka.bed -0.3789 0.3615 0.3621 0.3321 0.3406 7.0247e-02 -0.0651 0.3090 0.3706 0.0741 0.1161 0.0935 0.1869 0.1884 0.2775 H3K9ac_Trynka.extend.500.bed -0.4298 0.4047 0.4083 0.3023 0.3750 1.1089e-01 -0.0448 0.2263 0.3016 0.0818 0.1270 0.0778 0.1634 0.1760 0.3128 Intron_UCSC.bed -0.2899 0.1859 0.1858 0.0530 0.0858 2.5686e-01 0.1298 0.0371 0.0485 -0.0352 0.0224 0.0084 0.0938 0.0363 0.0648 Intron_UCSC.extend.500.bed -0.3128 0.1977 0.1977 0.0740 0.1007 2.6219e-01 0.1236 0.0746 0.0808 0.0073 0.0667 0.0680 0.1513 0.0392 0.0682 PromoterFlanking_Hoffman.bed -0.1049 0.0448 0.0463 0.0642 0.0840 7.7974e-05 -0.0156 0.0847 0.2055 0.0025 0.0121 0.0150 0.0444 0.0277 0.0637 PromoterFlanking_Hoffman.extend.500.bed -0.1800 0.0945 0.0983 0.1425 0.1692 -5.1850e-03 -0.0448 0.2347 0.3754 0.0160 0.0322 0.0424 0.1058 0.0735 0.1465 Promoter_UCSC.bed -0.1744 0.1123 0.1145 0.1680 0.1500 7.8622e-04 -0.0689 0.3199 0.3495 0.0669 0.1557 0.1899 0.4148 0.0304 0.0571 Promoter_UCSC.extend.500.bed -0.1861 0.1204 0.1231 0.1639 0.1506 1.2397e-02 -0.0602 0.3009 0.3372 0.0760 0.1613 0.1771 0.3852 0.0309 0.0616 Repressed_Hoffman.bed 0.5962 -0.2485 -0.2506 -0.2357 -0.2696 -6.8673e-01 -0.1348 -0.1259 -0.1722 -0.0653 -0.1002 -0.0514 -0.1074 -0.1519 -0.2510 Repressed_Hoffman.extend.500.bed 1.0000 -0.3513 -0.3529 -0.2745 -0.3078 -3.4357e-01 -0.0019 -0.2084 -0.2701 -0.0979 -0.1538 -0.0794 -0.1682 -0.1700 -0.2787 SuperEnhancer_Hnisz.bed -0.3513 1.0000 0.9889 0.2082 0.2599 1.2576e-01 0.0004 0.1579 0.1998 0.0531 0.0792 0.0406 0.0879 0.1155 0.2102 SuperEnhancer_Hnisz.extend.500.bed -0.3529 0.9889 1.0000 0.2077 0.2609 1.2708e-01 0.0004 0.1572 0.2013 0.0545 0.0804 0.0410 0.0884 0.1158 0.2112 TFBS_ENCODE.bed -0.2745 0.2082 0.2077 1.0000 0.5488 1.9945e-03 -0.0758 0.3074 0.3118 0.0437 0.0728 0.0845 0.1441 0.2266 0.2575 TFBS_ENCODE.extend.500.bed -0.3078 0.2599 0.2609 0.5488 1.0000 3.7928e-02 -0.0431 0.1919 0.2548 0.0460 0.0730 0.0599 0.1109 0.1822 0.3332 Transcribed_Hoffman.bed -0.3436 0.1258 0.1271 0.0020 0.0379 1.0000e+00 0.3813 -0.0480 -0.0346 0.0637 0.0884 0.0150 0.0335 -0.0046 0.0041 Transcribed_Hoffman.extend.500.bed -0.0019 0.0004 0.0004 -0.0758 -0.0431 3.8132e-01 1.0000 -0.1274 -0.1137 0.0150 0.0150 -0.0269 -0.0511 -0.0359 -0.0453 TSS_Hoffman.bed -0.2084 0.1579 0.1572 0.3074 0.1919 -4.8013e-02 -0.1274 1.0000 0.7215 0.0267 0.0692 0.1562 0.2866 0.0535 0.0759 TSS_Hoffman.extend.500.bed -0.2701 0.1998 0.2013 0.3118 0.2548 -3.4556e-02 -0.1137 0.7215 1.0000 0.0326 0.0742 0.1322 0.2617 0.0841 0.1402 UTR_3_UCSC.bed -0.0979 0.0531 0.0545 0.0437 0.0460 6.3674e-02 0.0150 0.0267 0.0326 1.0000 0.6335 0.0778 0.0470 0.0084 0.0140 UTR_3_UCSC.extend.500.bed -0.1538 0.0792 0.0804 0.0728 0.0730 8.8414e-02 0.0150 0.0692 0.0742 0.6335 1.0000 0.0704 0.1162 0.0138 0.0242 UTR_5_UCSC.bed -0.0794 0.0406 0.0410 0.0845 0.0599 1.4959e-02 -0.0269 0.1562 0.1322 0.0778 0.0704 1.0000 0.4622 0.0114 0.0128 UTR_5_UCSC.extend.500.bed -0.1682 0.0879 0.0884 0.1441 0.1109 3.3517e-02 -0.0511 0.2866 0.2617 0.0470 0.1162 0.4622 1.0000 0.0164 0.0286 WeakEnhancer_Hoffman.bed -0.1700 0.1155 0.1158 0.2266 0.1822 -4.6041e-03 -0.0359 0.0535 0.0841 0.0084 0.0138 0.0114 0.0164 1.0000 0.4831 WeakEnhancer_Hoffman.extend.500.bed -0.2787 0.2102 0.2112 0.2575 0.3332 4.1100e-03 -0.0453 0.0759 0.1402 0.0140 0.0242 0.0128 0.0286 0.4831 1.0000 Annotation Matrix Column Sums base 493922.0 Coding_UCSC.bed 9390.0 Coding_UCSC.extend.500.bed 36510.0 Conserved_LindbladToh.bed 13434.0 Conserved_LindbladToh.extend.500.bed 158875.0 CTCF_Hoffman.bed 12493.0 CTCF_Hoffman.extend.500.bed 36720.0 DGF_ENCODE.bed 66794.0 DGF_ENCODE.extend.500.bed 259341.0 DHS_peaks_Trynka.bed 54604.0 DHS_Trynka.bed 81358.0 DHS_Trynka.extend.500.bed 238341.0 Enhancer_Andersson.bed 1853.0 Enhancer_Andersson.extend.500.bed 8242.0 Enhancer_Hoffman.bed 22211.0 Enhancer_Hoffman.extend.500.bed 45659.0 FetalDHS_Trynka.bed 41744.0 FetalDHS_Trynka.extend.500.bed 137662.0 H3K27ac_Hnisz.bed 191001.0 H3K27ac_Hnisz.extend.500.bed 205399.0 H3K27ac_PGC2.bed 136096.0 H3K27ac_PGC2.extend.500.bed 167849.0 H3K4me1_peaks_Trynka.bed 87052.0 H3K4me1_Trynka.bed 209746.0 H3K4me1_Trynka.extend.500.bed 292196.0 H3K4me3_peaks_Trynka.bed 21471.0 H3K4me3_Trynka.bed 69192.0 H3K4me3_Trynka.extend.500.bed 127598.0 H3K9ac_peaks_Trynka.bed 21149.0 H3K9ac_Trynka.bed 67502.0 H3K9ac_Trynka.extend.500.bed 119440.0 Intron_UCSC.bed 196595.0 Intron_UCSC.extend.500.bed 202279.0 PromoterFlanking_Hoffman.bed 3950.0 PromoterFlanking_Hoffman.extend.500.bed 15927.0 Promoter_UCSC.bed 28578.0 Promoter_UCSC.extend.500.bed 35042.0 Repressed_Hoffman.bed 228520.0 Repressed_Hoffman.extend.500.bed 349607.0 SuperEnhancer_Hnisz.bed 91439.0 SuperEnhancer_Hnisz.extend.500.bed 93118.0 TFBS_ENCODE.bed 62909.0 TFBS_ENCODE.extend.500.bed 161228.0 Transcribed_Hoffman.bed 176731.0 Transcribed_Hoffman.extend.500.bed 391699.0 TSS_Hoffman.bed 8935.0 TSS_Hoffman.extend.500.bed 16885.0 UTR_3_UCSC.bed 5973.0 UTR_3_UCSC.extend.500.bed 14620.0 UTR_5_UCSC.bed 3222.0 UTR_5_UCSC.extend.500.bed 14729.0 WeakEnhancer_Hoffman.bed 12886.0 WeakEnhancer_Hoffman.extend.500.bed 50846.0 Summary of Annotation Matrix Row Sums count 493922.0000 mean 11.3390 std 7.1154 min 1.0000 25% 6.0000 50% 9.0000 75% 16.0000 max 44.0000 Analysis finished at Tue Oct 17 18:09:52 2017 Total time elapsed: 1.0h:28.0m:36.83s