UW Single-cell Atlases

Welcome! Single-cell genomics can in principle reveal the molecular definition of every cell type in an entire animal. We have begun cataloging cell types in the worm, fly and other organisms using single-cell profiles of gene expression and chromatin accessibility. This site serves as a portal for our data and a repository for our analysis code and protocols. We also provide tutorials to assist you in downloading, analyzing and exploring these data.

sci-RNA-seq of the worm

sci-ATAC-seq of the fly

42,035 L2 stage cells (RNA)

23,085 embryonic fly cells (ATAC)