FastQCFastQC Report
Mon 15 Mar 2021
Undetermined_S0_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUndetermined_S0_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59713269
Sequences flagged as poor quality0
Sequence length18
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAA5937990.9944171704952212No Hit
CAAAAAAAAAAAAAAAAA3594170.6019047458279332No Hit
TGGGGGGGGGGGGGGGGG2245150.375988459114506No Hit
ACAAAAAAAAAAAAAAAA1515440.2537861392247676No Hit
GAAAAAAAAAAAAAAAAA1359460.2276646418403253No Hit
CCAAAAAAAAAAAAAAAA1073750.17981765493361282No Hit
TAAAAAAAAAAAAAAAAA1002870.16794759637091716No Hit
GCAAAAAAAAAAAAAAAA973120.16296545412712207No Hit
GGGGGGGGGGGGGGGGGG921630.15434258003861756No Hit
ATAAAAAAAAAAAAAAAA635270.10638673960388938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)